RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ANKIB1Q9P2G1 1089 aa17.34■□□□□ 0.37
SHMT2-219ENST00000555563 CHMP3Q9Y3E7 222 aa17.34■□□□□ 0.37
SHMT2-219ENST00000555563 A0A1B0GUL6 1792 aa17.33■□□□□ 0.37
SHMT2-219ENST00000555563 XDHP47989 1333 aa17.33■□□□□ 0.36
SHMT2-219ENST00000555563 IGHMBP2P38935 993 aaKnown RBP17.33■□□□□ 0.36
SHMT2-219ENST00000555563 WASHC4Q2M389 1173 aa17.33■□□□□ 0.36
SHMT2-219ENST00000555563 LMBR1LQ6UX01 489 aa17.33■□□□□ 0.36
SHMT2-219ENST00000555563 GPC2Q8N158 579 aa17.33■□□□□ 0.36
SHMT2-219ENST00000555563 GGA1Q9UJY5 639 aa17.33■□□□□ 0.36
SHMT2-219ENST00000555563 ZNRF3Q9ULT6 936 aa17.33■□□□□ 0.36
SHMT2-219ENST00000555563 ANKRD18BA2A2Z9 1011 aa17.32■□□□□ 0.36
SHMT2-219ENST00000555563 RIMBP2O15034 1052 aa17.32■□□□□ 0.36
SHMT2-219ENST00000555563 FSTL1Q12841 308 aa17.32■□□□□ 0.36
SHMT2-219ENST00000555563 KAZALD1Q96I82 304 aa17.32■□□□□ 0.36
SHMT2-219ENST00000555563 EYA3Q99504 573 aa17.32■□□□□ 0.36
SHMT2-219ENST00000555563 API5Q9BZZ5 524 aaKnown RBP17.32■□□□□ 0.36
SHMT2-219ENST00000555563 GJA3Q9Y6H8 435 aa17.32■□□□□ 0.36
SHMT2-219ENST00000555563 IQCA1LA6NCM1 817 aa17.31■□□□□ 0.36
SHMT2-219ENST00000555563 YDJCA8MPS7 323 aa17.31■□□□□ 0.36
SHMT2-219ENST00000555563 IFIT5Q13325 482 aaKnown RBP17.31■□□□□ 0.36
SHMT2-219ENST00000555563 MINPP1Q9UNW1 487 aa17.31■□□□□ 0.36
SHMT2-219ENST00000555563 BCAR3O75815 825 aa17.3■□□□□ 0.36
SHMT2-219ENST00000555563 CCT4P50991 539 aaKnown RBP17.3■□□□□ 0.36
SHMT2-219ENST00000555563 CXCL9Q07325 125 aa17.3■□□□□ 0.36
SHMT2-219ENST00000555563 MPHOSPH8Q99549 860 aa17.3■□□□□ 0.36
SHMT2-219ENST00000555563 USP44Q9H0E7 712 aa17.3■□□□□ 0.36
SHMT2-219ENST00000555563 TAF1DQ9H5J8 278 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-219ENST00000555563 DBNDD1Q9H9R9 158 aa17.3■□□□□ 0.36
SHMT2-219ENST00000555563 RAD17O75943 681 aa17.29■□□□□ 0.36
SHMT2-219ENST00000555563 ATP2B4P23634 1241 aa17.29■□□□□ 0.36
SHMT2-219ENST00000555563 SMC1BQ8NDV3 1235 aa17.29■□□□□ 0.36
SHMT2-219ENST00000555563 BICC1Q9H694 974 aaKnown RBP17.29■□□□□ 0.36
SHMT2-219ENST00000555563 HACL1Q9UJ83 578 aa17.29■□□□□ 0.36
SHMT2-219ENST00000555563 ADAMTSL1Q8N6G6 1762 aa17.29■□□□□ 0.36
SHMT2-219ENST00000555563 WTIPA6NIX2 430 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-219ENST00000555563 ECE2O60344 883 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 POTEIP0CG38 1075 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 POTEJP0CG39 1038 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 SCNN1DP51172 638 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 DOK7Q18PE1 504 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 CCDC57Q2TAC2 916 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 CIAPIN1Q6FI81 312 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 ANKRD44Q8N8A2 993 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 ARHGAP45Q92619 1136 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 KLRG1Q96E93 195 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 ZNF594Q96JF6 807 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-219ENST00000555563 ZC3H12CQ9C0D7 883 aaKnown RBP17.28■□□□□ 0.36
SHMT2-219ENST00000555563 SCN9AQ15858 1988 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 MED23Q9ULK4 1368 aa17.28■□□□□ 0.36
SHMT2-219ENST00000555563 TRIM27P14373 513 aa17.27■□□□□ 0.36
SHMT2-219ENST00000555563 EPHX2P34913 555 aa17.27■□□□□ 0.36
SHMT2-219ENST00000555563 HTRA3P83110 453 aa17.27■□□□□ 0.36
SHMT2-219ENST00000555563 RABL6Q3YEC7 729 aaPredicted RBP17.27■□□□□ 0.36
SHMT2-219ENST00000555563 LMOD1P29536 600 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-219ENST00000555563 CHRNDQ07001 517 aa17.26■□□□□ 0.35
SHMT2-219ENST00000555563 TAF7LQ5H9L4 462 aa17.26■□□□□ 0.35
SHMT2-219ENST00000555563 FRAT1Q92837 279 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-219ENST00000555563 ANKRD2Q9GZV1 360 aa17.26■□□□□ 0.35
SHMT2-219ENST00000555563 TNNQ9UQP3 1299 aa17.26■□□□□ 0.35
SHMT2-219ENST00000555563 PSME4Q14997 1843 aa17.26■□□□□ 0.35
SHMT2-219ENST00000555563 IPO8O15397 1037 aaKnown RBP17.25■□□□□ 0.35
SHMT2-219ENST00000555563 GMPSP49915 693 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-219ENST00000555563 TNIP1Q15025 636 aa17.25■□□□□ 0.35
SHMT2-219ENST00000555563 EAPPQ56P03 285 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-219ENST00000555563 ATF7IPQ6VMQ6 1270 aa17.25■□□□□ 0.35
SHMT2-219ENST00000555563 JMYQ8N9B5 988 aa17.25■□□□□ 0.35
SHMT2-219ENST00000555563 GPRC5DQ9NZD1 345 aa17.25■□□□□ 0.35
SHMT2-219ENST00000555563 ZNF804BA4D1E1 1349 aa17.24■□□□□ 0.35
SHMT2-219ENST00000555563 PSMD14O00487 310 aa17.24■□□□□ 0.35
SHMT2-219ENST00000555563 UBTFL1P0CB47 393 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-219ENST00000555563 KLRK1P26718 216 aa17.24■□□□□ 0.35
SHMT2-219ENST00000555563 EPS15P42566 896 aa17.24■□□□□ 0.35
SHMT2-219ENST00000555563 INTS3Q68E01 1043 aaKnown RBP17.24■□□□□ 0.35
SHMT2-219ENST00000555563 LDHDQ86WU2 507 aa17.24■□□□□ 0.35
SHMT2-219ENST00000555563 KCNQ5Q9NR82 932 aa17.24■□□□□ 0.35
SHMT2-219ENST00000555563 LEMD3Q9Y2U8 911 aa17.24■□□□□ 0.35
SHMT2-219ENST00000555563 G3V3G9 751 aa17.23■□□□□ 0.35
SHMT2-219ENST00000555563 DCAF8Q5TAQ9 597 aa17.23■□□□□ 0.35
SHMT2-219ENST00000555563 CHADLQ6NUI6 762 aa17.23■□□□□ 0.35
SHMT2-219ENST00000555563 LDHAL6AQ6ZMR3 332 aa17.23■□□□□ 0.35
SHMT2-219ENST00000555563 HELBQ8NG08 1087 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-219ENST00000555563 MEIS3Q99687 375 aa17.23■□□□□ 0.35
SHMT2-219ENST00000555563 CNNM1Q9NRU3 951 aa17.23■□□□□ 0.35
SHMT2-219ENST00000555563 ZNF646O15015 1829 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-219ENST00000555563 SNAP23O00161 211 aa17.22■□□□□ 0.35
SHMT2-219ENST00000555563 TAF5LO75529 589 aa17.22■□□□□ 0.35
SHMT2-219ENST00000555563 KCNJ4P48050 445 aa17.22■□□□□ 0.35
SHMT2-219ENST00000555563 ZKSCAN2Q63HK3 967 aa17.22■□□□□ 0.35
SHMT2-219ENST00000555563 PNMA8AQ86V59 439 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-219ENST00000555563 TXNRD3Q86VQ6 643 aa17.22■□□□□ 0.35
SHMT2-219ENST00000555563 CLUAP1Q96AJ1 413 aa17.22■□□□□ 0.35
SHMT2-219ENST00000555563 ZBTB12Q9Y330 459 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-219ENST00000555563 PUS3Q9BZE2 481 aaKnown RBP17.21■□□□□ 0.35
SHMT2-219ENST00000555563 LRRFIP2Q9Y608 721 aaKnown RBP17.21■□□□□ 0.35
SHMT2-219ENST00000555563 ZNF609O15014 1411 aa17.21■□□□□ 0.34
SHMT2-219ENST00000555563 IRS2Q9Y4H2 1338 aa17.21■□□□□ 0.34
SHMT2-219ENST00000555563 SHTN1A0MZ66 631 aa17.2■□□□□ 0.34
SHMT2-219ENST00000555563 COL13A1Q5TAT6 717 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-219ENST00000555563 KLHDC4Q8TBB5 520 aa17.2■□□□□ 0.34
SHMT2-219ENST00000555563 PLIN1O60240 522 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms