RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 DZIP1LQ8IYY4 767 aaKnown RBP17.85■□□□□ 0.45
SHMT2-217ENST00000555116 TBC1D16Q8TBP0 767 aa17.85■□□□□ 0.45
SHMT2-217ENST00000555116 KIAA2012Q0VF49 1180 aa17.84■□□□□ 0.45
SHMT2-217ENST00000555116 LARGE2Q8N3Y3 721 aa17.84■□□□□ 0.45
SHMT2-217ENST00000555116 ZNF594Q96JF6 807 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-217ENST00000555116 MPHOSPH8Q99549 860 aa17.84■□□□□ 0.45
SHMT2-217ENST00000555116 XDHP47989 1333 aa17.84■□□□□ 0.45
SHMT2-217ENST00000555116 GLTPD2A6NH11 291 aa17.84■□□□□ 0.45
SHMT2-217ENST00000555116 FZD9O00144 591 aa17.84■□□□□ 0.45
SHMT2-217ENST00000555116 ANKIB1Q9P2G1 1089 aa17.84■□□□□ 0.45
SHMT2-217ENST00000555116 C6orf229H3BNL8 230 aa17.83■□□□□ 0.44
SHMT2-217ENST00000555116 FTSJ3Q8IY81 847 aaKnown RBP17.83■□□□□ 0.44
SHMT2-217ENST00000555116 JDP2Q8WYK2 163 aa17.83■□□□□ 0.44
SHMT2-217ENST00000555116 GPBP1L1Q9HC44 474 aaPredicted RBP17.83■□□□□ 0.44
SHMT2-217ENST00000555116 GGA1Q9UJY5 639 aa17.83■□□□□ 0.44
SHMT2-217ENST00000555116 LRRFIP2Q9Y608 721 aaKnown RBP17.83■□□□□ 0.44
SHMT2-217ENST00000555116 ZNF541Q9H0D2 1346 aa17.82■□□□□ 0.44
SHMT2-217ENST00000555116 UFL1O94874 794 aa17.82■□□□□ 0.44
SHMT2-217ENST00000555116 GNAI3P08754 354 aa17.82■□□□□ 0.44
SHMT2-217ENST00000555116 GPR101Q96P66 508 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-217ENST00000555116 WDR90Q96KV7 1748 aa17.82■□□□□ 0.44
SHMT2-217ENST00000555116 KDM2BQ8NHM5 1336 aa17.82■□□□□ 0.44
SHMT2-217ENST00000555116 NIM1KQ8IY84 436 aa17.82■□□□□ 0.44
SHMT2-217ENST00000555116 HDAC5Q9UQL6 1122 aa17.82■□□□□ 0.44
SHMT2-217ENST00000555116 WTIPA6NIX2 430 aaPredicted RBP17.81■□□□□ 0.44
SHMT2-217ENST00000555116 ATP2B4P23634 1241 aa17.81■□□□□ 0.44
SHMT2-217ENST00000555116 CHRNDQ07001 517 aa17.81■□□□□ 0.44
SHMT2-217ENST00000555116 WASHC4Q2M389 1173 aa17.81■□□□□ 0.44
SHMT2-217ENST00000555116 TAF7LQ5H9L4 462 aa17.81■□□□□ 0.44
SHMT2-217ENST00000555116 DPY19L2Q6NUT2 758 aa17.81■□□□□ 0.44
SHMT2-217ENST00000555116 PANK1Q8TE04 598 aa17.81■□□□□ 0.44
SHMT2-217ENST00000555116 EYA3Q99504 573 aa17.81■□□□□ 0.44
SHMT2-217ENST00000555116 RIMBP2O15034 1052 aa17.8■□□□□ 0.44
SHMT2-217ENST00000555116 RFX5P48382 616 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-217ENST00000555116 LDHAL6AQ6ZMR3 332 aa17.8■□□□□ 0.44
SHMT2-217ENST00000555116 ANKRD2Q9GZV1 360 aa17.8■□□□□ 0.44
SHMT2-217ENST00000555116 NMRK2Q9NPI5 230 aa17.8■□□□□ 0.44
SHMT2-217ENST00000555116 SCN9AQ15858 1988 aa17.8■□□□□ 0.44
SHMT2-217ENST00000555116 PLIN1O60240 522 aa17.8■□□□□ 0.44
SHMT2-217ENST00000555116 DDNO94850 711 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-217ENST00000555116 PUS3Q9BZE2 481 aaKnown RBP17.8■□□□□ 0.44
SHMT2-217ENST00000555116 ITPRIPQ8IWB1 547 aa17.79■□□□□ 0.44
SHMT2-217ENST00000555116 CNNM1Q9NRU3 951 aa17.79■□□□□ 0.44
SHMT2-217ENST00000555116 ZNRF3Q9ULT6 936 aa17.79■□□□□ 0.44
SHMT2-217ENST00000555116 MS4A1P11836 297 aa17.78■□□□□ 0.44
SHMT2-217ENST00000555116 KLHDC4Q8TBB5 520 aa17.78■□□□□ 0.44
SHMT2-217ENST00000555116 LEMD3Q9Y2U8 911 aa17.78■□□□□ 0.44
SHMT2-217ENST00000555116 RIPOR2Q9Y4F9 1068 aa17.78■□□□□ 0.44
SHMT2-217ENST00000555116 PSME4Q14997 1843 aa17.78■□□□□ 0.44
SHMT2-217ENST00000555116 SCN4AP35499 1836 aa17.78■□□□□ 0.44
SHMT2-217ENST00000555116 YDJCA8MPS7 323 aa17.78■□□□□ 0.44
SHMT2-217ENST00000555116 KIF3CO14782 793 aa17.78■□□□□ 0.44
SHMT2-217ENST00000555116 EIF6P56537 245 aaKnown RBP17.78■□□□□ 0.44
SHMT2-217ENST00000555116 HELBQ8NG08 1087 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-217ENST00000555116 ZC3H12CQ9C0D7 883 aaKnown RBP17.78■□□□□ 0.44
SHMT2-217ENST00000555116 RRAGCQ9HB90 399 aa17.78■□□□□ 0.44
SHMT2-217ENST00000555116 MED23Q9ULK4 1368 aa17.77■□□□□ 0.44
SHMT2-217ENST00000555116 POTECB2RU33 542 aa17.77■□□□□ 0.43
SHMT2-217ENST00000555116 ZBTB7BO15156 539 aaPredicted RBP17.77■□□□□ 0.43
SHMT2-217ENST00000555116 GNAI2P04899 355 aa17.77■□□□□ 0.43
SHMT2-217ENST00000555116 ZNF804BA4D1E1 1349 aa17.77■□□□□ 0.43
SHMT2-217ENST00000555116 TAF5LO75529 589 aa17.76■□□□□ 0.43
SHMT2-217ENST00000555116 PTPN12Q05209 780 aaKnown RBP17.76■□□□□ 0.43
SHMT2-217ENST00000555116 CXCL9Q07325 125 aa17.76■□□□□ 0.43
SHMT2-217ENST00000555116 MTX1Q13505 466 aa17.76■□□□□ 0.43
SHMT2-217ENST00000555116 DOK7Q18PE1 504 aa17.76■□□□□ 0.43
SHMT2-217ENST00000555116 LRRC24Q50LG9 513 aa17.76■□□□□ 0.43
SHMT2-217ENST00000555116 DBNDD1Q9H9R9 158 aa17.76■□□□□ 0.43
SHMT2-217ENST00000555116 GPC2Q8N158 579 aa17.75■□□□□ 0.43
SHMT2-217ENST00000555116 L3MBTL3Q96JM7 780 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-217ENST00000555116 SNAP23O00161 211 aa17.75■□□□□ 0.43
SHMT2-217ENST00000555116 ECE2O60344 883 aa17.75■□□□□ 0.43
SHMT2-217ENST00000555116 KLRK1P26718 216 aa17.75■□□□□ 0.43
SHMT2-217ENST00000555116 TXNRD3Q86VQ6 643 aa17.75■□□□□ 0.43
SHMT2-217ENST00000555116 IRS2Q9Y4H2 1338 aa17.75■□□□□ 0.43
SHMT2-217ENST00000555116 SUPT16HQ9Y5B9 1047 aaKnown RBP17.74■□□□□ 0.43
SHMT2-217ENST00000555116 MROH5Q6ZUA9 1318 aa17.74■□□□□ 0.43
SHMT2-217ENST00000555116 ZNF646O15015 1829 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-217ENST00000555116 EYA2O00167 538 aa17.73■□□□□ 0.43
SHMT2-217ENST00000555116 VEGFAP15692 232 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-217ENST00000555116 PDE3AQ14432 1141 aa17.73■□□□□ 0.43
SHMT2-217ENST00000555116 MVPQ14764 893 aaKnown RBP17.73■□□□□ 0.43
SHMT2-217ENST00000555116 C20orf194Q5TEA3 1177 aa17.73■□□□□ 0.43
SHMT2-217ENST00000555116 CIAPIN1Q6FI81 312 aa17.73■□□□□ 0.43
SHMT2-217ENST00000555116 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-217ENST00000555116 GJA3Q9Y6H8 435 aa17.73■□□□□ 0.43
SHMT2-217ENST00000555116 RAD17O75943 681 aa17.73■□□□□ 0.43
SHMT2-217ENST00000555116 KCNJ4P48050 445 aa17.73■□□□□ 0.43
SHMT2-217ENST00000555116 C15orf52Q6ZUT6 534 aaKnown RBP17.73■□□□□ 0.43
SHMT2-217ENST00000555116 VGLL2Q8N8G2 317 aa17.73■□□□□ 0.43
SHMT2-217ENST00000555116 COPRSQ9NQ92 184 aa17.73■□□□□ 0.43
SHMT2-217ENST00000555116 KCNQ5Q9NR82 932 aa17.73■□□□□ 0.43
SHMT2-217ENST00000555116 COG6Q9Y2V7 657 aa17.73■□□□□ 0.43
SHMT2-217ENST00000555116 SRGAP3O43295 1099 aa17.72■□□□□ 0.43
SHMT2-217ENST00000555116 ATG9AQ7Z3C6 839 aa17.72■□□□□ 0.43
SHMT2-217ENST00000555116 C1orf115Q9H7X2 142 aa17.72■□□□□ 0.43
SHMT2-217ENST00000555116 FBXO3Q9UK99 471 aa17.72■□□□□ 0.43
SHMT2-217ENST00000555116 PA2G4Q9UQ80 394 aaKnown RBP17.72■□□□□ 0.43
SHMT2-217ENST00000555116 PNMA6EA0A0J9YXQ4 647 aa17.71■□□□□ 0.43
SHMT2-217ENST00000555116 METTL24Q5JXM2 366 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms