RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 CHMP3Q9Y3E7 222 aa21.35■■□□□ 1.01
SHOX-204ENST00000554971 FER1L6Q2WGJ9 1857 aa21.34■■□□□ 1.01
SHOX-204ENST00000554971 C22orf23Q9BZE7 217 aa21.34■■□□□ 1.01
SHOX-204ENST00000554971 SNED1Q8TER0 1413 aa21.34■■□□□ 1.01
SHOX-204ENST00000554971 MTX1Q13505 466 aa21.33■■□□□ 1.01
SHOX-204ENST00000554971 A0A1B0GUL6 1792 aa21.33■■□□□ 1.01
SHOX-204ENST00000554971 RFX5P48382 616 aaPredicted RBP21.33■■□□□ 1
SHOX-204ENST00000554971 ZNF594Q96JF6 807 aaPredicted RBP21.33■■□□□ 1
SHOX-204ENST00000554971 LTBP1Q14766 1721 aa21.33■■□□□ 1
SHOX-204ENST00000554971 PNMA6EA0A0J9YXQ4 647 aa21.32■■□□□ 1
SHOX-204ENST00000554971 C21orf2O43822 256 aa21.32■■□□□ 1
SHOX-204ENST00000554971 RPS8P62241 208 aaKnown RBP21.32■■□□□ 1
SHOX-204ENST00000554971 KLHDC4Q8TBB5 520 aa21.32■■□□□ 1
SHOX-204ENST00000554971 ZNF219Q9P2Y4 722 aaPredicted RBP21.32■■□□□ 1
SHOX-204ENST00000554971 PPEF1O14829 653 aaPredicted RBP21.31■■□□□ 1
SHOX-204ENST00000554971 IFIT5Q13325 482 aaKnown RBP21.31■■□□□ 1
SHOX-204ENST00000554971 BCL11AQ9H165 835 aa21.31■■□□□ 1
SHOX-204ENST00000554971 BBOX1O75936 387 aa21.31■■□□□ 1
SHOX-204ENST00000554971 ANKRD18BA2A2Z9 1011 aa21.3■■□□□ 1
SHOX-204ENST00000554971 CCDC57Q2TAC2 916 aa21.3■■□□□ 1
SHOX-204ENST00000554971 CEP85Q6P2H3 762 aa21.3■■□□□ 1
SHOX-204ENST00000554971 HDAC5Q9UQL6 1122 aa21.3■■□□□ 1
SHOX-204ENST00000554971 PTPN12Q05209 780 aaKnown RBP21.29■■□□□ 1
SHOX-204ENST00000554971 GSE1Q14687 1217 aa21.29■■□□□ 1
SHOX-204ENST00000554971 CDC5LQ99459 802 aaKnown RBP21.29■■□□□ 1
SHOX-204ENST00000554971 CCDC88AQ3V6T2 1871 aa21.29■■□□□ 1
SHOX-204ENST00000554971 SRGAP3O43295 1099 aa21.29■■□□□ 1
SHOX-204ENST00000554971 RBM25P49756 843 aaKnown RBP21.29■■□□□ 1
SHOX-204ENST00000554971 ANKRD18AQ8IVF6 992 aa21.29■■□□□ 1
SHOX-204ENST00000554971 SIRT2Q8IXJ6 389 aa21.29■■□□□ 1
SHOX-204ENST00000554971 RPAP2Q8IXW5 612 aaPredicted RBP21.29■■□□□ 1
SHOX-204ENST00000554971 ATP6V0A2Q9Y487 856 aa21.29■■□□□ 1
SHOX-204ENST00000554971 DUOX1Q9NRD9 1551 aa21.29■■□□□ 1
SHOX-204ENST00000554971 SBF1O95248 1867 aa21.29■■□□□ 1
SHOX-204ENST00000554971 TBC1D2Q9BYX2 928 aa21.28■■□□□ 1
SHOX-204ENST00000554971 LNPKQ9C0E8 428 aa21.28■■□□□ 1
SHOX-204ENST00000554971 BSDC1Q9NW68 430 aaPredicted RBP21.28■■□□□ 1
SHOX-204ENST00000554971 ANKRD45Q5TZF3 282 aa21.27■■□□□ 1
SHOX-204ENST00000554971 PUS3Q9BZE2 481 aaKnown RBP21.27■■□□□ 1
SHOX-204ENST00000554971 ANTXR1Q9H6X2 564 aa21.27■■□□□ 1
SHOX-204ENST00000554971 ATP8B2P98198 1209 aa21.27■■□□□ 1
SHOX-204ENST00000554971 GPR162Q16538 588 aa21.27■■□□□ 1
SHOX-204ENST00000554971 SP8Q8IXZ3 490 aa21.27■■□□□ 1
SHOX-204ENST00000554971 PA2G4Q9UQ80 394 aaKnown RBP21.27■■□□□ 1
SHOX-204ENST00000554971 POLA2Q14181 598 aa21.26■□□□□ 0.99
SHOX-204ENST00000554971 DCTPP1Q9H773 170 aa21.26■□□□□ 0.99
SHOX-204ENST00000554971 IGHMBP2P38935 993 aaKnown RBP21.25■□□□□ 0.99
SHOX-204ENST00000554971 SSH3Q8TE77 659 aa21.25■□□□□ 0.99
SHOX-204ENST00000554971 MINPP1Q9UNW1 487 aa21.25■□□□□ 0.99
SHOX-204ENST00000554971 NFKBIEO00221 500 aa21.25■□□□□ 0.99
SHOX-204ENST00000554971 MFAP1P55081 439 aaKnown RBP21.25■□□□□ 0.99
SHOX-204ENST00000554971 LRRC24Q50LG9 513 aa21.25■□□□□ 0.99
SHOX-204ENST00000554971 WTIPA6NIX2 430 aaPredicted RBP21.24■□□□□ 0.99
SHOX-204ENST00000554971 LDHAL6AQ6ZMR3 332 aa21.24■□□□□ 0.99
SHOX-204ENST00000554971 TMC4Q7Z404 712 aa21.24■□□□□ 0.99
SHOX-204ENST00000554971 MPHOSPH8Q99549 860 aa21.24■□□□□ 0.99
SHOX-204ENST00000554971 COPRSQ9NQ92 184 aa21.24■□□□□ 0.99
SHOX-204ENST00000554971 RIPOR2Q9Y4F9 1068 aa21.23■□□□□ 0.99
SHOX-204ENST00000554971 PRELPP51888 382 aa21.23■□□□□ 0.99
SHOX-204ENST00000554971 CCDC93Q567U6 631 aa21.23■□□□□ 0.99
SHOX-204ENST00000554971 TAF7LQ5H9L4 462 aa21.23■□□□□ 0.99
SHOX-204ENST00000554971 ATG9AQ7Z3C6 839 aa21.23■□□□□ 0.99
SHOX-204ENST00000554971 SNX21Q969T3 373 aa21.23■□□□□ 0.99
SHOX-204ENST00000554971 SIL1Q9H173 461 aa21.23■□□□□ 0.99
SHOX-204ENST00000554971 FRAT2O75474 233 aaPredicted RBP21.22■□□□□ 0.99
SHOX-204ENST00000554971 GPSM2P81274 684 aa21.22■□□□□ 0.99
SHOX-204ENST00000554971 RASSF7Q02833 373 aa21.21■□□□□ 0.99
SHOX-204ENST00000554971 CHRNDQ07001 517 aa21.21■□□□□ 0.99
SHOX-204ENST00000554971 SOGA3Q5TF21 947 aa21.21■□□□□ 0.99
SHOX-204ENST00000554971 CC2D2BQ6DHV5 1058 aa21.21■□□□□ 0.99
SHOX-204ENST00000554971 CNNM1Q9NRU3 951 aa21.21■□□□□ 0.99
SHOX-204ENST00000554971 NSFL1CQ9UNZ2 370 aaKnown RBP21.21■□□□□ 0.99
SHOX-204ENST00000554971 DICER1Q9UPY3 1922 aaKnown RBP21.2■□□□□ 0.98
SHOX-204ENST00000554971 SNAP23O00161 211 aa21.2■□□□□ 0.98
SHOX-204ENST00000554971 EYA2O00167 538 aa21.2■□□□□ 0.98
SHOX-204ENST00000554971 ARHGAP27Q6ZUM4 889 aa21.2■□□□□ 0.98
SHOX-204ENST00000554971 HELBQ8NG08 1087 aaPredicted RBP21.2■□□□□ 0.98
SHOX-204ENST00000554971 PODXL2Q9NZ53 605 aa21.2■□□□□ 0.98
SHOX-204ENST00000554971 POLLQ9UGP5 575 aa21.2■□□□□ 0.98
SHOX-204ENST00000554971 VGLL2Q8N8G2 317 aa21.19■□□□□ 0.98
SHOX-204ENST00000554971 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.19■□□□□ 0.98
SHOX-204ENST00000554971 CHD4Q14839 1912 aa21.19■□□□□ 0.98
SHOX-204ENST00000554971 COL4A5P29400 1685 aa21.19■□□□□ 0.98
SHOX-204ENST00000554971 GRIN3BO60391 1043 aa21.19■□□□□ 0.98
SHOX-204ENST00000554971 TAF5LO75529 589 aa21.19■□□□□ 0.98
SHOX-204ENST00000554971 HSCBQ8IWL3 235 aa21.19■□□□□ 0.98
SHOX-204ENST00000554971 RTKN2Q8IZC4 609 aa21.19■□□□□ 0.98
SHOX-204ENST00000554971 MPNDQ8N594 471 aa21.19■□□□□ 0.98
SHOX-204ENST00000554971 DPP8Q6V1X1 898 aaPredicted RBP21.18■□□□□ 0.98
SHOX-204ENST00000554971 PSMD1Q99460 953 aa21.18■□□□□ 0.98
SHOX-204ENST00000554971 RTFDC1Q9BY42 306 aaPredicted RBP21.18■□□□□ 0.98
SHOX-204ENST00000554971 ANKIB1Q9P2G1 1089 aa21.18■□□□□ 0.98
SHOX-204ENST00000554971 XDHP47989 1333 aa21.18■□□□□ 0.98
SHOX-204ENST00000554971 GPR101Q96P66 508 aaPredicted RBP21.17■□□□□ 0.98
SHOX-204ENST00000554971 TAOK3Q9H2K8 898 aa21.17■□□□□ 0.98
SHOX-204ENST00000554971 LTBP3Q9NS15 1303 aa21.17■□□□□ 0.98
SHOX-204ENST00000554971 CIAO1O76071 339 aa21.17■□□□□ 0.98
SHOX-204ENST00000554971 FKBP4Q02790 459 aaKnown RBP eCLIP21.17■□□□□ 0.98
SHOX-204ENST00000554971 TBC1D16Q8TBP0 767 aa21.17■□□□□ 0.98
SHOX-204ENST00000554971 CHMP5Q9NZZ3 219 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms