RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 CHMP3Q9Y3E7 222 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 RTL9Q8NET4 1388 aa14.67□□□□□ -0.06
CCDC88C-208ENST00000554165 RAD17O75943 681 aa14.66□□□□□ -0.06
CCDC88C-208ENST00000554165 CT47B1P0C2W7 299 aaPredicted RBP14.66□□□□□ -0.06
CCDC88C-208ENST00000554165 EIF6P56537 245 aaKnown RBP14.66□□□□□ -0.06
CCDC88C-208ENST00000554165 WASHC4Q2M389 1173 aa14.66□□□□□ -0.06
CCDC88C-208ENST00000554165 RBM46Q8TBY0 533 aaKnown RBP14.66□□□□□ -0.06
CCDC88C-208ENST00000554165 DBNDD1Q9H9R9 158 aa14.66□□□□□ -0.06
CCDC88C-208ENST00000554165 BSDC1Q9NW68 430 aaPredicted RBP14.66□□□□□ -0.06
CCDC88C-208ENST00000554165 ZNRF3Q9ULT6 936 aa14.66□□□□□ -0.06
CCDC88C-208ENST00000554165 GPC2Q8N158 579 aa14.65□□□□□ -0.06
CCDC88C-208ENST00000554165 ZNF594Q96JF6 807 aaPredicted RBP14.65□□□□□ -0.06
CCDC88C-208ENST00000554165 USP44Q9H0E7 712 aa14.65□□□□□ -0.06
CCDC88C-208ENST00000554165 TAF1DQ9H5J8 278 aaPredicted RBP14.65□□□□□ -0.06
CCDC88C-208ENST00000554165 PODXL2Q9NZ53 605 aa14.65□□□□□ -0.06
CCDC88C-208ENST00000554165 GGA1Q9UJY5 639 aa14.65□□□□□ -0.06
CCDC88C-208ENST00000554165 SNAP23O00161 211 aa14.64□□□□□ -0.07
CCDC88C-208ENST00000554165 EPS15P42566 896 aa14.64□□□□□ -0.07
CCDC88C-208ENST00000554165 ANKRD44Q8N8A2 993 aa14.64□□□□□ -0.07
CCDC88C-208ENST00000554165 HELBQ8NG08 1087 aaPredicted RBP14.64□□□□□ -0.07
CCDC88C-208ENST00000554165 VPS33BQ9H267 617 aa14.64□□□□□ -0.07
CCDC88C-208ENST00000554165 UTYO14607 1347 aa14.64□□□□□ -0.07
CCDC88C-208ENST00000554165 ZBED9Q6R2W3 1325 aa14.64□□□□□ -0.07
CCDC88C-208ENST00000554165 SHTN1A0MZ66 631 aa14.63□□□□□ -0.07
CCDC88C-208ENST00000554165 ANKRD18BA2A2Z9 1011 aa14.63□□□□□ -0.07
CCDC88C-208ENST00000554165 KLRK1P26718 216 aa14.63□□□□□ -0.07
CCDC88C-208ENST00000554165 IGHMBP2P38935 993 aaKnown RBP14.63□□□□□ -0.07
CCDC88C-208ENST00000554165 SCNN1DP51172 638 aa14.63□□□□□ -0.07
CCDC88C-208ENST00000554165 BRPF1P55201 1214 aaPredicted RBP14.63□□□□□ -0.07
CCDC88C-208ENST00000554165 HTRA3P83110 453 aa14.63□□□□□ -0.07
CCDC88C-208ENST00000554165 IFIT5Q13325 482 aaKnown RBP14.63□□□□□ -0.07
CCDC88C-208ENST00000554165 BICC1Q9H694 974 aaKnown RBP14.63□□□□□ -0.07
CCDC88C-208ENST00000554165 HACL1Q9UJ83 578 aa14.63□□□□□ -0.07
CCDC88C-208ENST00000554165 XDHP47989 1333 aa14.63□□□□□ -0.07
CCDC88C-208ENST00000554165 ECE2O60344 883 aa14.62□□□□□ -0.07
CCDC88C-208ENST00000554165 HSPA6P17066 643 aa14.62□□□□□ -0.07
CCDC88C-208ENST00000554165 EPHX2P34913 555 aa14.62□□□□□ -0.07
CCDC88C-208ENST00000554165 GMPSP49915 693 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-208ENST00000554165 EAPPQ56P03 285 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-208ENST00000554165 CIAPIN1Q6FI81 312 aa14.62□□□□□ -0.07
CCDC88C-208ENST00000554165 TXNRD3Q86VQ6 643 aa14.62□□□□□ -0.07
CCDC88C-208ENST00000554165 FRAT1Q92837 279 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-208ENST00000554165 ZC3H12CQ9C0D7 883 aaKnown RBP14.62□□□□□ -0.07
CCDC88C-208ENST00000554165 ZBTB12Q9Y330 459 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-208ENST00000554165 CEP350Q5VT06 3117 aa14.61□□□□□ -0.07
CCDC88C-208ENST00000554165 IQCA1LA6NCM1 817 aa14.61□□□□□ -0.07
CCDC88C-208ENST00000554165 PSMD14O00487 310 aa14.61□□□□□ -0.07
CCDC88C-208ENST00000554165 TAF5LO75529 589 aa14.61□□□□□ -0.07
CCDC88C-208ENST00000554165 ATP2B4P23634 1241 aa14.61□□□□□ -0.07
CCDC88C-208ENST00000554165 CHRNDQ07001 517 aa14.61□□□□□ -0.07
CCDC88C-208ENST00000554165 SMC1BQ8NDV3 1235 aa14.61□□□□□ -0.07
CCDC88C-208ENST00000554165 EYA3Q99504 573 aa14.61□□□□□ -0.07
CCDC88C-208ENST00000554165 MPHOSPH8Q99549 860 aa14.61□□□□□ -0.07
CCDC88C-208ENST00000554165 PUS3Q9BZE2 481 aaKnown RBP14.61□□□□□ -0.07
CCDC88C-208ENST00000554165 API5Q9BZZ5 524 aaKnown RBP14.61□□□□□ -0.07
CCDC88C-208ENST00000554165 SCN9AQ15858 1988 aa14.6□□□□□ -0.07
CCDC88C-208ENST00000554165 CCT4P50991 539 aaKnown RBP14.6□□□□□ -0.07
CCDC88C-208ENST00000554165 FSTL1Q12841 308 aa14.6□□□□□ -0.07
CCDC88C-208ENST00000554165 CCDC57Q2TAC2 916 aa14.6□□□□□ -0.07
CCDC88C-208ENST00000554165 SCN4AP35499 1836 aa14.59□□□□□ -0.07
CCDC88C-208ENST00000554165 PLIN1O60240 522 aa14.59□□□□□ -0.07
CCDC88C-208ENST00000554165 TRIM27P14373 513 aa14.59□□□□□ -0.07
CCDC88C-208ENST00000554165 RABL6Q3YEC7 729 aaPredicted RBP14.59□□□□□ -0.07
CCDC88C-208ENST00000554165 CHADLQ6NUI6 762 aa14.59□□□□□ -0.07
CCDC88C-208ENST00000554165 KLHDC4Q8TBB5 520 aa14.59□□□□□ -0.07
CCDC88C-208ENST00000554165 CLUAP1Q96AJ1 413 aa14.59□□□□□ -0.07
CCDC88C-208ENST00000554165 GPRC5DQ9NZD1 345 aa14.59□□□□□ -0.07
CCDC88C-208ENST00000554165 G3V3G9 751 aa14.58□□□□□ -0.08
CCDC88C-208ENST00000554165 TNIP1Q15025 636 aa14.58□□□□□ -0.08
CCDC88C-208ENST00000554165 TAF7LQ5H9L4 462 aa14.58□□□□□ -0.08
CCDC88C-208ENST00000554165 DCAF8Q5TAQ9 597 aa14.58□□□□□ -0.08
CCDC88C-208ENST00000554165 MAP1SQ66K74 1059 aaPredicted RBP14.58□□□□□ -0.08
CCDC88C-208ENST00000554165 LDHAL6AQ6ZMR3 332 aa14.58□□□□□ -0.08
CCDC88C-208ENST00000554165 ARHGAP45Q92619 1136 aa14.58□□□□□ -0.08
CCDC88C-208ENST00000554165 MEIS3Q99687 375 aa14.58□□□□□ -0.08
CCDC88C-208ENST00000554165 CLEC11AQ9Y240 323 aa14.58□□□□□ -0.08
CCDC88C-208ENST00000554165 ZNF804BA4D1E1 1349 aa14.58□□□□□ -0.08
CCDC88C-208ENST00000554165 KIF16BQ96L93 1317 aa14.58□□□□□ -0.08
CCDC88C-208ENST00000554165 LMOD1P29536 600 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-208ENST00000554165 LDHDQ86WU2 507 aa14.57□□□□□ -0.08
CCDC88C-208ENST00000554165 MXD3Q9BW11 206 aa14.57□□□□□ -0.08
CCDC88C-208ENST00000554165 ANKRD2Q9GZV1 360 aa14.57□□□□□ -0.08
CCDC88C-208ENST00000554165 LEMD3Q9Y2U8 911 aa14.57□□□□□ -0.08
CCDC88C-208ENST00000554165 EGFRP00533 1210 aa14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 UBTFL1P0CB47 393 aaPredicted RBP14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 HIRAP54198 1017 aaPredicted RBP14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 FMR1Q06787 632 aaKnown RBP eCLIP14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 LRRC24Q50LG9 513 aa14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 INTS3Q68E01 1043 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 ATF7IPQ6VMQ6 1270 aa14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 MICALL2Q8IY33 904 aa14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 TRPM4Q8TD43 1214 aa14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 CNNM1Q9NRU3 951 aa14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 CNOT7Q9UIV1 285 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 LRRFIP2Q9Y608 721 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 IRS2Q9Y4H2 1338 aa14.56□□□□□ -0.08
CCDC88C-208ENST00000554165 IPO8O15397 1037 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-208ENST00000554165 VIL1P09327 827 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-208ENST00000554165 KCNJ4P48050 445 aa14.55□□□□□ -0.08
CCDC88C-208ENST00000554165 RIPOR2Q9Y4F9 1068 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms