RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 H0YIN7 160 aa11.85□□□□□ -0.51
LIMA1-211ENST00000552338 KCNA3P22001 575 aa11.85□□□□□ -0.51
LIMA1-211ENST00000552338 IGHMBP2P38935 993 aaKnown RBP11.85□□□□□ -0.51
LIMA1-211ENST00000552338 KLHDC4Q8TBB5 520 aa11.85□□□□□ -0.51
LIMA1-211ENST00000552338 CELF1Q92879 486 aaKnown RBP11.85□□□□□ -0.51
LIMA1-211ENST00000552338 LRRCC1Q9C099 1032 aa11.85□□□□□ -0.51
LIMA1-211ENST00000552338 EXOC6BQ9Y2D4 811 aa11.85□□□□□ -0.51
LIMA1-211ENST00000552338 SLX4Q8IY92 1834 aa11.85□□□□□ -0.51
LIMA1-211ENST00000552338 ARAP2Q8WZ64 1704 aa11.85□□□□□ -0.51
LIMA1-211ENST00000552338 SALL3Q9BXA9 1300 aa11.85□□□□□ -0.51
LIMA1-211ENST00000552338 ARFGEF1Q9Y6D6 1849 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 FGFR2P21802 821 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 GRIPAP1Q4V328 841 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 LRRC24Q50LG9 513 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 CHD1LQ86WJ1 897 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 SP8Q8IXZ3 490 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 CCDC24Q8N4L8 307 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 C7orf43Q8WVR3 580 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 RPGRQ92834 1020 aaKnown RBP11.84□□□□□ -0.51
LIMA1-211ENST00000552338 CNKSR1Q969H4 720 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 ZNF594Q96JF6 807 aaPredicted RBP11.84□□□□□ -0.51
LIMA1-211ENST00000552338 PUS3Q9BZE2 481 aaKnown RBP11.84□□□□□ -0.51
LIMA1-211ENST00000552338 PODXL2Q9NZ53 605 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 MINPP1Q9UNW1 487 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 CHMP3Q9Y3E7 222 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 CACNA1SQ13698 1873 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 SNED1Q8TER0 1413 aa11.84□□□□□ -0.51
LIMA1-211ENST00000552338 PDE8BO95263 885 aa11.83□□□□□ -0.52
LIMA1-211ENST00000552338 C2CD5Q86YS7 1000 aa11.83□□□□□ -0.52
LIMA1-211ENST00000552338 MPHOSPH8Q99549 860 aa11.83□□□□□ -0.52
LIMA1-211ENST00000552338 OSBPL3Q9H4L5 887 aa11.83□□□□□ -0.52
LIMA1-211ENST00000552338 TAF7LQ5H9L4 462 aa11.82□□□□□ -0.52
LIMA1-211ENST00000552338 ANKRD45Q5TZF3 282 aa11.82□□□□□ -0.52
LIMA1-211ENST00000552338 CC2D2BQ6DHV5 1058 aa11.82□□□□□ -0.52
LIMA1-211ENST00000552338 C15orf52Q6ZUT6 534 aaKnown RBP11.82□□□□□ -0.52
LIMA1-211ENST00000552338 CLASRPQ8N2M8 674 aaKnown RBP11.82□□□□□ -0.52
LIMA1-211ENST00000552338 CCDC85AQ96PX6 553 aaPredicted RBP11.82□□□□□ -0.52
LIMA1-211ENST00000552338 ANKRD2Q9GZV1 360 aa11.82□□□□□ -0.52
LIMA1-211ENST00000552338 CEP126Q9P2H0 1117 aa11.82□□□□□ -0.52
LIMA1-211ENST00000552338 STAP2Q9UGK3 403 aa11.82□□□□□ -0.52
LIMA1-211ENST00000552338 AKAP2Q9Y2D5 859 aa11.82□□□□□ -0.52
LIMA1-211ENST00000552338 ATP6V0A2Q9Y487 856 aa11.82□□□□□ -0.52
LIMA1-211ENST00000552338 CHRNDQ07001 517 aa11.81□□□□□ -0.52
LIMA1-211ENST00000552338 UBE4AQ14139 1066 aa11.81□□□□□ -0.52
LIMA1-211ENST00000552338 CNNM1Q9NRU3 951 aa11.81□□□□□ -0.52
LIMA1-211ENST00000552338 LEMD3Q9Y2U8 911 aa11.81□□□□□ -0.52
LIMA1-211ENST00000552338 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.81□□□□□ -0.52
LIMA1-211ENST00000552338 IRS2Q9Y4H2 1338 aa11.81□□□□□ -0.52
LIMA1-211ENST00000552338 FER1L6Q2WGJ9 1857 aa11.8□□□□□ -0.52
LIMA1-211ENST00000552338 ZNF609O15014 1411 aa11.8□□□□□ -0.52
LIMA1-211ENST00000552338 TFCP2Q12800 502 aa11.8□□□□□ -0.52
LIMA1-211ENST00000552338 TNNI3KQ59H18 835 aa11.8□□□□□ -0.52
LIMA1-211ENST00000552338 EAF2Q96CJ1 260 aaPredicted RBP11.8□□□□□ -0.52
LIMA1-211ENST00000552338 ZNF512BQ96KM6 892 aaPredicted RBP11.8□□□□□ -0.52
LIMA1-211ENST00000552338 SIL1Q9H173 461 aa11.8□□□□□ -0.52
LIMA1-211ENST00000552338 FPGT-TNNI3KV9GXZ4 949 aa11.8□□□□□ -0.52
LIMA1-211ENST00000552338 AOX1Q06278 1338 aa11.8□□□□□ -0.52
LIMA1-211ENST00000552338 AKAP11Q9UKA4 1901 aa11.8□□□□□ -0.52
LIMA1-211ENST00000552338 DPEP1P16444 411 aa11.79□□□□□ -0.52
LIMA1-211ENST00000552338 PDE4AP27815 886 aa11.79□□□□□ -0.52
LIMA1-211ENST00000552338 CHRNA5P30532 468 aa11.79□□□□□ -0.52
LIMA1-211ENST00000552338 PLEKHM2Q8IWE5 1019 aa11.79□□□□□ -0.52
LIMA1-211ENST00000552338 TTLL6Q8N841 843 aa11.79□□□□□ -0.52
LIMA1-211ENST00000552338 LPIN2Q92539 896 aa11.79□□□□□ -0.52
LIMA1-211ENST00000552338 RTFDC1Q9BY42 306 aaPredicted RBP11.79□□□□□ -0.52
LIMA1-211ENST00000552338 PIM2Q9P1W9 311 aa11.79□□□□□ -0.52
LIMA1-211ENST00000552338 XDHP47989 1333 aa11.79□□□□□ -0.52
LIMA1-211ENST00000552338 TTC41PQ6P2S7 1318 aa11.79□□□□□ -0.52
LIMA1-211ENST00000552338 PPEF1O14829 653 aaPredicted RBP11.78□□□□□ -0.52
LIMA1-211ENST00000552338 ATP2B4P23634 1241 aa11.78□□□□□ -0.52
LIMA1-211ENST00000552338 OS9Q13438 667 aaPredicted RBP11.78□□□□□ -0.52
LIMA1-211ENST00000552338 PUM3Q15397 648 aaKnown RBP11.78□□□□□ -0.52
LIMA1-211ENST00000552338 METTL24Q5JXM2 366 aa11.78□□□□□ -0.52
LIMA1-211ENST00000552338 SOGA3Q5TF21 947 aa11.78□□□□□ -0.52
LIMA1-211ENST00000552338 PRPF40BQ6NWY9 871 aaKnown RBP11.78□□□□□ -0.52
LIMA1-211ENST00000552338 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.78□□□□□ -0.52
LIMA1-211ENST00000552338 LNPKQ9C0E8 428 aa11.78□□□□□ -0.52
LIMA1-211ENST00000552338 VPS33BQ9H267 617 aa11.78□□□□□ -0.52
LIMA1-211ENST00000552338 DUOX1Q9NRD9 1551 aa11.78□□□□□ -0.52
LIMA1-211ENST00000552338 A0A0G2JLW4 131 aa11.77□□□□□ -0.53
LIMA1-211ENST00000552338 A0A1B0GUL7 405 aa11.77□□□□□ -0.53
LIMA1-211ENST00000552338 SMARCA5O60264 1052 aaPredicted RBP11.77□□□□□ -0.53
LIMA1-211ENST00000552338 PDE1AP54750 535 aa11.77□□□□□ -0.53
LIMA1-211ENST00000552338 TICAM2Q86XR7 235 aa11.77□□□□□ -0.53
LIMA1-211ENST00000552338 ZNF622Q969S3 477 aaKnown RBP eCLIP11.77□□□□□ -0.536e-8■□□□□ 9.1
LIMA1-211ENST00000552338 IL1RAPL2Q9NP60 686 aa11.77□□□□□ -0.53
LIMA1-211ENST00000552338 ZNF804BA4D1E1 1349 aa11.77□□□□□ -0.53
LIMA1-211ENST00000552338 TIMM10P62072 90 aa11.76□□□□□ -0.53
LIMA1-211ENST00000552338 ATP2B3Q16720 1220 aa11.76□□□□□ -0.53
LIMA1-211ENST00000552338 C16orf71Q8IYS4 520 aaPredicted RBP11.76□□□□□ -0.53
LIMA1-211ENST00000552338 ZBTB47Q9UFB7 747 aaPredicted RBP11.76□□□□□ -0.53
LIMA1-211ENST00000552338 DBNLQ9UJU6 430 aaKnown RBP11.76□□□□□ -0.53
LIMA1-211ENST00000552338 U3KPZ7 1027 aaPredicted RBP11.76□□□□□ -0.53
LIMA1-211ENST00000552338 IGSF3O75054 1194 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 IFIT2P09913 472 aaKnown RBP11.75□□□□□ -0.53
LIMA1-211ENST00000552338 IFIT1P09914 478 aaKnown RBP11.75□□□□□ -0.53
LIMA1-211ENST00000552338 SLC5A1P13866 664 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 ATP5JP18859 108 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 MX1P20591 662 aa11.75□□□□□ -0.53
LIMA1-211ENST00000552338 GPSM2P81274 684 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms