RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 POLA2Q14181 598 aa28.84■■■□□ 2.21
SMARCD1-203ENST00000547247 COPRSQ9NQ92 184 aa28.84■■■□□ 2.21
SMARCD1-203ENST00000547247 MINPP1Q9UNW1 487 aa28.84■■■□□ 2.21
SMARCD1-203ENST00000547247 ARHGAP27Q6ZUM4 889 aa28.83■■■□□ 2.21
SMARCD1-203ENST00000547247 LRRC37AA6NMS7 1700 aa28.82■■■□□ 2.2
SMARCD1-203ENST00000547247 PUS3Q9BZE2 481 aaKnown RBP28.82■■■□□ 2.2
SMARCD1-203ENST00000547247 PA2G4Q9UQ80 394 aaKnown RBP28.82■■■□□ 2.2
SMARCD1-203ENST00000547247 MPNDQ8N594 471 aa28.81■■■□□ 2.2
SMARCD1-203ENST00000547247 FBXO3Q9UK99 471 aa28.81■■■□□ 2.2
SMARCD1-203ENST00000547247 NSFL1CQ9UNZ2 370 aaKnown RBP28.81■■■□□ 2.2
SMARCD1-203ENST00000547247 HMMRO75330 724 aa28.8■■■□□ 2.2
SMARCD1-203ENST00000547247 LRRC24Q50LG9 513 aa28.8■■■□□ 2.2
SMARCD1-203ENST00000547247 SIL1Q9H173 461 aa28.8■■■□□ 2.2
SMARCD1-203ENST00000547247 RIPOR2Q9Y4F9 1068 aa28.8■■■□□ 2.2
SMARCD1-203ENST00000547247 SNED1Q8TER0 1413 aa28.8■■■□□ 2.2
SMARCD1-203ENST00000547247 EYA2O00167 538 aa28.79■■■□□ 2.2
SMARCD1-203ENST00000547247 CHRNDQ07001 517 aa28.79■■■□□ 2.2
SMARCD1-203ENST00000547247 DPP8Q6V1X1 898 aaPredicted RBP28.79■■■□□ 2.2
SMARCD1-203ENST00000547247 SIRT2Q8IXJ6 389 aa28.79■■■□□ 2.2
SMARCD1-203ENST00000547247 ANKIB1Q9P2G1 1089 aa28.79■■■□□ 2.2
SMARCD1-203ENST00000547247 GPSM2P81274 684 aa28.79■■■□□ 2.2
SMARCD1-203ENST00000547247 ANKRD2Q9GZV1 360 aa28.79■■■□□ 2.2
SMARCD1-203ENST00000547247 PODXL2Q9NZ53 605 aa28.79■■■□□ 2.2
SMARCD1-203ENST00000547247 XDHP47989 1333 aa28.78■■■□□ 2.2
SMARCD1-203ENST00000547247 NFKBIEO00221 500 aa28.78■■■□□ 2.2
SMARCD1-203ENST00000547247 FER1L6Q2WGJ9 1857 aa28.77■■■□□ 2.2
SMARCD1-203ENST00000547247 CIAO1O76071 339 aa28.77■■■□□ 2.2
SMARCD1-203ENST00000547247 FKBP4Q02790 459 aaKnown RBP eCLIP28.77■■■□□ 2.2
SMARCD1-203ENST00000547247 PSMD1Q99460 953 aa28.77■■■□□ 2.2
SMARCD1-203ENST00000547247 TAOK3Q9H2K8 898 aa28.77■■■□□ 2.2
SMARCD1-203ENST00000547247 PCDHB15Q9Y5E8 787 aa28.77■■■□□ 2.2
SMARCD1-203ENST00000547247 MROH5Q6ZUA9 1318 aa28.77■■■□□ 2.2
SMARCD1-203ENST00000547247 ATG9AQ7Z3C6 839 aa28.75■■■□□ 2.19
SMARCD1-203ENST00000547247 LTBP3Q9NS15 1303 aa28.75■■■□□ 2.19
SMARCD1-203ENST00000547247 IL15P40933 162 aaPredicted RBP28.75■■■□□ 2.19
SMARCD1-203ENST00000547247 G3BP1Q13283 466 aaKnown RBP eCLIP28.75■■■□□ 2.19
SMARCD1-203ENST00000547247 METTL24Q5JXM2 366 aa28.75■■■□□ 2.19
SMARCD1-203ENST00000547247 HELBQ8NG08 1087 aaPredicted RBP28.75■■■□□ 2.19
SMARCD1-203ENST00000547247 RTFDC1Q9BY42 306 aaPredicted RBP28.75■■■□□ 2.19
SMARCD1-203ENST00000547247 GGA1Q9UJY5 639 aa28.75■■■□□ 2.19
SMARCD1-203ENST00000547247 SURF6O75683 361 aaKnown RBP28.74■■■□□ 2.19
SMARCD1-203ENST00000547247 NEFLP07196 543 aa28.74■■■□□ 2.19
SMARCD1-203ENST00000547247 YY1P25490 414 aa28.74■■■□□ 2.19
SMARCD1-203ENST00000547247 RASSF7Q02833 373 aa28.74■■■□□ 2.19
SMARCD1-203ENST00000547247 SUPT20HQ8NEM7 779 aa28.74■■■□□ 2.19
SMARCD1-203ENST00000547247 TAF5LO75529 589 aa28.73■■■□□ 2.19
SMARCD1-203ENST00000547247 ATP2B4P23634 1241 aa28.73■■■□□ 2.19
SMARCD1-203ENST00000547247 NOP58Q9Y2X3 529 aaKnown RBP28.73■■■□□ 2.19
SMARCD1-203ENST00000547247 C6orf229H3BNL8 230 aa28.72■■■□□ 2.19
SMARCD1-203ENST00000547247 UFL1O94874 794 aa28.72■■■□□ 2.19
SMARCD1-203ENST00000547247 TBC1D16Q8TBP0 767 aa28.72■■■□□ 2.19
SMARCD1-203ENST00000547247 POLLQ9UGP5 575 aa28.72■■■□□ 2.19
SMARCD1-203ENST00000547247 LEMD3Q9Y2U8 911 aa28.72■■■□□ 2.19
SMARCD1-203ENST00000547247 SBF1O95248 1867 aa28.71■■■□□ 2.19
SMARCD1-203ENST00000547247 LTBP1Q14766 1721 aa28.71■■■□□ 2.19
SMARCD1-203ENST00000547247 OS9Q13438 667 aaPredicted RBP28.71■■■□□ 2.19
SMARCD1-203ENST00000547247 CEP126Q9P2H0 1117 aa28.71■■■□□ 2.19
SMARCD1-203ENST00000547247 DUOX1Q9NRD9 1551 aa28.7■■■□□ 2.19
SMARCD1-203ENST00000547247 PDE8BO95263 885 aa28.7■■■□□ 2.18
SMARCD1-203ENST00000547247 KCNJ4P48050 445 aa28.7■■■□□ 2.18
SMARCD1-203ENST00000547247 VGLL2Q8N8G2 317 aa28.7■■■□□ 2.18
SMARCD1-203ENST00000547247 ZNF277Q9NRM2 450 aaPredicted RBP28.7■■■□□ 2.18
SMARCD1-203ENST00000547247 CCDC88AQ3V6T2 1871 aa28.69■■■□□ 2.18
SMARCD1-203ENST00000547247 ZNF804BA4D1E1 1349 aa28.69■■■□□ 2.18
SMARCD1-203ENST00000547247 HSP90AB4PQ58FF6 505 aa28.69■■■□□ 2.18
SMARCD1-203ENST00000547247 LMNB1P20700 586 aa28.68■■■□□ 2.18
SMARCD1-203ENST00000547247 EYA3Q99504 573 aa28.68■■■□□ 2.18
SMARCD1-203ENST00000547247 VPS33BQ9H267 617 aa28.68■■■□□ 2.18
SMARCD1-203ENST00000547247 EXOC6BQ9Y2D4 811 aa28.68■■■□□ 2.18
SMARCD1-203ENST00000547247 A0A1B0GUL6 1792 aa28.68■■■□□ 2.18
SMARCD1-203ENST00000547247 WTIPA6NIX2 430 aaPredicted RBP28.67■■■□□ 2.18
SMARCD1-203ENST00000547247 WASHC4Q2M389 1173 aa28.67■■■□□ 2.18
SMARCD1-203ENST00000547247 IARSP41252 1262 aaKnown RBP28.67■■■□□ 2.18
SMARCD1-203ENST00000547247 UBE4AQ14139 1066 aa28.67■■■□□ 2.18
SMARCD1-203ENST00000547247 SNAP23O00161 211 aa28.66■■■□□ 2.18
SMARCD1-203ENST00000547247 PPIP5K2O43314 1243 aa28.66■■■□□ 2.18
SMARCD1-203ENST00000547247 PRELPP51888 382 aa28.66■■■□□ 2.18
SMARCD1-203ENST00000547247 GPR101Q96P66 508 aaPredicted RBP28.66■■■□□ 2.18
SMARCD1-203ENST00000547247 ZC3H12CQ9C0D7 883 aaKnown RBP28.66■■■□□ 2.18
SMARCD1-203ENST00000547247 SASH1O94885 1247 aa28.65■■■□□ 2.18
SMARCD1-203ENST00000547247 KIAA2012Q0VF49 1180 aa28.65■■■□□ 2.18
SMARCD1-203ENST00000547247 TFCP2Q12800 502 aa28.65■■■□□ 2.18
SMARCD1-203ENST00000547247 ERC1Q8IUD2 1116 aa28.65■■■□□ 2.18
SMARCD1-203ENST00000547247 RIMBP2O15034 1052 aa28.64■■■□□ 2.18
SMARCD1-203ENST00000547247 HDAC1Q13547 482 aaPredicted RBP28.64■■■□□ 2.18
SMARCD1-203ENST00000547247 PUM3Q15397 648 aaKnown RBP28.64■■■□□ 2.18
SMARCD1-203ENST00000547247 AOC3Q16853 763 aa28.64■■■□□ 2.18
SMARCD1-203ENST00000547247 LARGE2Q8N3Y3 721 aa28.63■■■□□ 2.17
SMARCD1-203ENST00000547247 DCTPP1Q9H773 170 aa28.63■■■□□ 2.17
SMARCD1-203ENST00000547247 MED23Q9ULK4 1368 aa28.63■■■□□ 2.17
SMARCD1-203ENST00000547247 RNF181Q9P0P0 153 aa28.62■■■□□ 2.17
SMARCD1-203ENST00000547247 AKAP2Q9Y2D5 859 aa28.62■■■□□ 2.17
SMARCD1-203ENST00000547247 RAB11FIP3O75154 756 aa28.62■■■□□ 2.17
SMARCD1-203ENST00000547247 FGFR2P21802 821 aa28.62■■■□□ 2.17
SMARCD1-203ENST00000547247 C9orf131Q5VYM1 1079 aa28.62■■■□□ 2.17
SMARCD1-203ENST00000547247 LPIN2Q92539 896 aa28.62■■■□□ 2.17
SMARCD1-203ENST00000547247 RWDD1Q9H446 243 aaPredicted RBP28.62■■■□□ 2.17
SMARCD1-203ENST00000547247 C15orf52Q6ZUT6 534 aaKnown RBP28.61■■■□□ 2.17
SMARCD1-203ENST00000547247 JDP2Q8WYK2 163 aa28.61■■■□□ 2.17
SMARCD1-203ENST00000547247 IFIT1P09914 478 aaKnown RBP28.6■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms