RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CIAO1	O76071	339 aa		12.57	□□□□□ -0.4
CPSF7-221	ENST00000543545	CHRND	Q07001	517 aa		12.57	□□□□□ -0.4
CPSF7-221	ENST00000543545	CCDC93	Q567U6	631 aa		12.57	□□□□□ -0.4
CPSF7-221	ENST00000543545	ERICH6B	Q5W0A0	696 aa		12.57	□□□□□ -0.4
CPSF7-221	ENST00000543545	DPP8	Q6V1X1	898 aa	Predicted RBP	12.57	□□□□□ -0.4
CPSF7-221	ENST00000543545	ARHGAP27	Q6ZUM4	889 aa		12.57	□□□□□ -0.4
CPSF7-221	ENST00000543545	MPND	Q8N594	471 aa		12.57	□□□□□ -0.4
CPSF7-221	ENST00000543545	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.57	□□□□□ -0.4
CPSF7-221	ENST00000543545	FBXO3	Q9UK99	471 aa		12.57	□□□□□ -0.4
CPSF7-221	ENST00000543545	MROH5	Q6ZUA9	1318 aa		12.57	□□□□□ -0.4
CPSF7-221	ENST00000543545	C6orf229	H3BNL8	230 aa		12.56	□□□□□ -0.4
CPSF7-221	ENST00000543545	TAF5L	O75529	589 aa		12.56	□□□□□ -0.4
CPSF7-221	ENST00000543545	GPSM2	P81274	684 aa		12.56	□□□□□ -0.4
CPSF7-221	ENST00000543545	HDAC1	Q13547	482 aa	Predicted RBP	12.56	□□□□□ -0.4
CPSF7-221	ENST00000543545	SLC51A	Q86UW1	340 aa		12.56	□□□□□ -0.4
CPSF7-221	ENST00000543545	ERC1	Q8IUD2	1116 aa		12.56	□□□□□ -0.4
CPSF7-221	ENST00000543545	RTKN2	Q8IZC4	609 aa		12.56	□□□□□ -0.4
CPSF7-221	ENST00000543545	C7orf43	Q8WVR3	580 aa		12.56	□□□□□ -0.4
CPSF7-221	ENST00000543545	CCDC136	Q96JN2	1154 aa		12.56	□□□□□ -0.4
CPSF7-221	ENST00000543545	NOP58	Q9Y2X3	529 aa	Known RBP	12.56	□□□□□ -0.4
CPSF7-221	ENST00000543545	RIPOR2	Q9Y4F9	1068 aa		12.56	□□□□□ -0.4
CPSF7-221	ENST00000543545	RAB11FIP3	O75154	756 aa		12.55	□□□□□ -0.4
CPSF7-221	ENST00000543545	UFL1	O94874	794 aa		12.55	□□□□□ -0.4
CPSF7-221	ENST00000543545	IGHD	P01880	384 aa		12.55	□□□□□ -0.4
CPSF7-221	ENST00000543545	TFCP2	Q12800	502 aa		12.55	□□□□□ -0.4
CPSF7-221	ENST00000543545	GRIPAP1	Q4V328	841 aa		12.55	□□□□□ -0.4
CPSF7-221	ENST00000543545	ATG9A	Q7Z3C6	839 aa		12.55	□□□□□ -0.4
CPSF7-221	ENST00000543545	DCTPP1	Q9H773	170 aa		12.55	□□□□□ -0.4
CPSF7-221	ENST00000543545	PPP4R2	Q9NY27	417 aa		12.55	□□□□□ -0.4
CPSF7-221	ENST00000543545	GGA1	Q9UJY5	639 aa		12.55	□□□□□ -0.4
CPSF7-221	ENST00000543545	XDH	P47989	1333 aa		12.55	□□□□□ -0.4
CPSF7-221	ENST00000543545	TNRC6C	Q9HCJ0	1690 aa	Known RBP	12.54	□□□□□ -0.4
CPSF7-221	ENST00000543545	ATP2B4	P23634	1241 aa		12.54	□□□□□ -0.4
CPSF7-221	ENST00000543545	LEMD3	Q9Y2U8	911 aa		12.54	□□□□□ -0.4
CPSF7-221	ENST00000543545		G3V3G9	751 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	GRIN3B	O60391	1043 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	PDE8B	O95263	885 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	YBX3	P16989	372 aa	Known RBP eCLIP	12.53	□□□□□ -0.4	3e-7	■■□□□ 12.8
CPSF7-221	ENST00000543545	DCAF8	Q5TAQ9	597 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	ANKRD45	Q5TZF3	282 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	B4GALNT3	Q6L9W6	998 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	SUPT20H	Q8NEM7	779 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	TBC1D16	Q8TBP0	767 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	RHPN1	Q8TCX5	695 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	GCC1	Q96CN9	775 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	KIF1BP	Q96EK5	621 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	NEUROD6	Q96NK8	337 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	IL1RAPL2	Q9NP60	686 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	AKAP2	Q9Y2D5	859 aa		12.53	□□□□□ -0.4
CPSF7-221	ENST00000543545	SNAP23	O00161	211 aa		12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	RIMBP2	O15034	1052 aa		12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	SASH1	O94885	1247 aa		12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	IFIT1	P09914	478 aa	Known RBP	12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	PUM3	Q15397	648 aa	Known RBP	12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	ATP2B3	Q16720	1220 aa		12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	GPR101	Q96P66	508 aa	Predicted RBP	12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	EYA3	Q99504	573 aa		12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	LRRCC1	Q9C099	1032 aa		12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	ZC3H12C	Q9C0D7	883 aa	Known RBP	12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	TAOK3	Q9H2K8	898 aa		12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	PODXL2	Q9NZ53	605 aa		12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	POLL	Q9UGP5	575 aa		12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	ZNF804B	A4D1E1	1349 aa		12.52	□□□□□ -0.41
CPSF7-221	ENST00000543545	DDX60	Q8IY21	1712 aa	Known RBP	12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	SMARCA5	O60264	1052 aa	Predicted RBP	12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	SLC5A1	P13866	664 aa		12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	TIMM10	P62072	90 aa		12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	FKBP4	Q02790	459 aa	Known RBP eCLIP	12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	UBE4A	Q14139	1066 aa		12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	WASHC4	Q2M389	1173 aa		12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	GORAB	Q5T7V8	394 aa		12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	CLASRP	Q8N2M8	674 aa	Known RBP	12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	ZNF277	Q9NRM2	450 aa	Predicted RBP	12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	SRCAP	Q6ZRS2	3230 aa		12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	LRP5	O75197	1615 aa		12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	N4BP2	Q86UW6	1770 aa	Predicted RBP	12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	ANKRD31	Q8N7Z5	1873 aa		12.51	□□□□□ -0.41
CPSF7-221	ENST00000543545	WTIP	A6NIX2	430 aa	Predicted RBP	12.5	□□□□□ -0.41
CPSF7-221	ENST00000543545	IFIT2	P09913	472 aa	Known RBP	12.5	□□□□□ -0.41
CPSF7-221	ENST00000543545	RASSF7	Q02833	373 aa		12.5	□□□□□ -0.41
CPSF7-221	ENST00000543545	TNNI3K	Q59H18	835 aa		12.5	□□□□□ -0.41
CPSF7-221	ENST00000543545	AACS	Q86V21	672 aa		12.5	□□□□□ -0.41
CPSF7-221	ENST00000543545	VPS37D	Q86XT2	251 aa		12.5	□□□□□ -0.41
CPSF7-221	ENST00000543545	LPIN2	Q92539	896 aa		12.5	□□□□□ -0.41
CPSF7-221	ENST00000543545	PSMD1	Q99460	953 aa		12.5	□□□□□ -0.41
CPSF7-221	ENST00000543545	FPGT-TNNI3K	V9GXZ4	949 aa		12.5	□□□□□ -0.41
CPSF7-221	ENST00000543545		A0A1B0GUL7	405 aa		12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	NFKBIE	O00221	500 aa		12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	PPIP5K2	O43314	1243 aa		12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	CAVIN4	Q5BKX8	364 aa		12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	CENPQ	Q7L2Z9	268 aa	Predicted RBP	12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	SMC5	Q8IY18	1101 aa		12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	LARGE2	Q8N3Y3	721 aa		12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	VGLL2	Q8N8G2	317 aa		12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	RTFDC1	Q9BY42	306 aa	Predicted RBP	12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	CCDC8	Q9H0W5	538 aa	Predicted RBP	12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	GPR108	Q9NPR9	543 aa		12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	GTF3C3	Q9Y5Q9	886 aa		12.49	□□□□□ -0.41
CPSF7-221	ENST00000543545	KLRK1	P26718	216 aa		12.48	□□□□□ -0.41
CPSF7-221	ENST00000543545	AOC3	Q16853	763 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms