RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 RPS8P62241 208 aaKnown RBP9.55□□□□□ -0.88
YBX3-209ENST00000540747 KIF23Q02241 960 aaPredicted RBP9.55□□□□□ -0.88
YBX3-209ENST00000540747 RALBP1Q15311 655 aa9.55□□□□□ -0.88
YBX3-209ENST00000540747 HDGFL1Q5TGJ6 251 aa9.55□□□□□ -0.88
YBX3-209ENST00000540747 CCDC102AQ96A19 550 aa9.55□□□□□ -0.88
YBX3-209ENST00000540747 ZNF428Q96B54 188 aa9.55□□□□□ -0.88
YBX3-209ENST00000540747 GMLQ99445 158 aa9.55□□□□□ -0.88
YBX3-209ENST00000540747 RNF186Q9NXI6 227 aa9.55□□□□□ -0.88
YBX3-209ENST00000540747 DBF4Q9UBU7 674 aaPredicted RBP9.55□□□□□ -0.88
YBX3-209ENST00000540747 PSME4Q14997 1843 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 C6orf229H3BNL8 230 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 IRS4O14654 1257 aaPredicted RBP9.54□□□□□ -0.88
YBX3-209ENST00000540747 RIMBP2O15034 1052 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 ZNF853P0CG23 659 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 DOK7Q18PE1 504 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 KIF4BQ2VIQ3 1234 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 C2orf69Q8N8R5 385 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 CDCA5Q96FF9 252 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 CSRNP1Q96S65 589 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 EYA3Q99504 573 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 HYPKQ9NX55 129 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 GGA3Q9NZ52 723 aa9.54□□□□□ -0.88
YBX3-209ENST00000540747 PAPPA2Q9BXP8 1791 aa9.53□□□□□ -0.88
YBX3-209ENST00000540747 ZNF157P51786 506 aaPredicted RBP9.53□□□□□ -0.88
YBX3-209ENST00000540747 RASAL3Q86YV0 1011 aa9.53□□□□□ -0.88
YBX3-209ENST00000540747 CCDC146Q8IYE0 955 aa9.53□□□□□ -0.88
YBX3-209ENST00000540747 ZBTB38Q8NAP3 1195 aaPredicted RBP9.53□□□□□ -0.88
YBX3-209ENST00000540747 AGBL3Q8NEM8 1001 aa9.53□□□□□ -0.88
YBX3-209ENST00000540747 DCPSQ96C86 337 aaKnown RBP9.53□□□□□ -0.88
YBX3-209ENST00000540747 CFAP44Q96MT7 982 aa9.53□□□□□ -0.88
YBX3-209ENST00000540747 SEC31BQ9NQW1 1179 aa9.53□□□□□ -0.88
YBX3-209ENST00000540747 ZNF646O15015 1829 aaPredicted RBP9.53□□□□□ -0.88
YBX3-209ENST00000540747 TRPA1O75762 1119 aa9.52□□□□□ -0.89
YBX3-209ENST00000540747 UFL1O94874 794 aa9.52□□□□□ -0.89
YBX3-209ENST00000540747 FKBP1BP68106 108 aa9.52□□□□□ -0.89
YBX3-209ENST00000540747 DUSP27Q5VZP5 1158 aa9.52□□□□□ -0.89
YBX3-209ENST00000540747 RSBN1LQ6PCB5 846 aaPredicted RBP9.52□□□□□ -0.89
YBX3-209ENST00000540747 RUNDC1Q96C34 613 aa9.52□□□□□ -0.89
YBX3-209ENST00000540747 MBIPQ9NS73 344 aa9.52□□□□□ -0.89
YBX3-209ENST00000540747 PCDH10Q9P2E7 1040 aa9.52□□□□□ -0.89
YBX3-209ENST00000540747 MYBBP1AQ9BQG0 1328 aaKnown RBP9.52□□□□□ -0.89
YBX3-209ENST00000540747 PITPNM2Q9BZ72 1349 aa9.52□□□□□ -0.89
YBX3-209ENST00000540747 PCCAP05165 728 aaPredicted RBP9.51□□□□□ -0.89
YBX3-209ENST00000540747 SCARF1Q14162 830 aa9.51□□□□□ -0.89
YBX3-209ENST00000540747 RTL5Q5HYW3 569 aaPredicted RBP9.51□□□□□ -0.89
YBX3-209ENST00000540747 RBM26Q5T8P6 1007 aaKnown RBP9.51□□□□□ -0.89
YBX3-209ENST00000540747 SULF1Q8IWU6 871 aa9.51□□□□□ -0.89
YBX3-209ENST00000540747 REM2Q8IYK8 340 aaPredicted RBP9.51□□□□□ -0.89
YBX3-209ENST00000540747 ZC3H12CQ9C0D7 883 aaKnown RBP9.51□□□□□ -0.89
YBX3-209ENST00000540747 GGA1Q9UJY5 639 aa9.51□□□□□ -0.89
YBX3-209ENST00000540747 NEUROD2Q15784 382 aa9.5□□□□□ -0.89
YBX3-209ENST00000540747 ANGEL2Q5VTE6 544 aaKnown RBP9.5□□□□□ -0.89
YBX3-209ENST00000540747 CTU1Q7Z7A3 348 aaKnown RBP9.5□□□□□ -0.89
YBX3-209ENST00000540747 CCDC191Q8NCU4 936 aa9.5□□□□□ -0.89
YBX3-209ENST00000540747 PHAXQ9H814 394 aaKnown RBP9.5□□□□□ -0.89
YBX3-209ENST00000540747 AKAP11Q9UKA4 1901 aa9.5□□□□□ -0.89
YBX3-209ENST00000540747 XDHP47989 1333 aa9.5□□□□□ -0.89
YBX3-209ENST00000540747 MKI67P46013 3256 aaKnown RBP9.5□□□□□ -0.89
YBX3-209ENST00000540747 WTIPA6NIX2 430 aaPredicted RBP9.49□□□□□ -0.89
YBX3-209ENST00000540747 PDE8AO60658 829 aa9.49□□□□□ -0.89
YBX3-209ENST00000540747 USP17L8P0C7I0 530 aa9.49□□□□□ -0.89
YBX3-209ENST00000540747 ZEB1P37275 1124 aaPredicted RBP9.49□□□□□ -0.89
YBX3-209ENST00000540747 SOX10P56693 466 aa9.49□□□□□ -0.89
YBX3-209ENST00000540747 CCDC152Q4G0S7 254 aa9.49□□□□□ -0.89
YBX3-209ENST00000540747 NOM1Q5C9Z4 860 aaKnown RBP9.49□□□□□ -0.89
YBX3-209ENST00000540747 MYOZ2Q9NPC6 264 aa9.49□□□□□ -0.89
YBX3-209ENST00000540747 ADAMTS8Q9UP79 889 aa9.49□□□□□ -0.89
YBX3-209ENST00000540747 LAS1LQ9Y4W2 734 aaKnown RBP9.49□□□□□ -0.89
YBX3-209ENST00000540747 MED23Q9ULK4 1368 aa9.49□□□□□ -0.89
YBX3-209ENST00000540747 HSP90B1P14625 803 aaKnown RBP9.48□□□□□ -0.89
YBX3-209ENST00000540747 GOLGA2Q08379 1002 aa9.48□□□□□ -0.89
YBX3-209ENST00000540747 DACT2Q5SW24 774 aa9.48□□□□□ -0.89
YBX3-209ENST00000540747 MOB2Q70IA6 237 aa9.48□□□□□ -0.89
YBX3-209ENST00000540747 RIC3Q7Z5B4 369 aa9.48□□□□□ -0.89
YBX3-209ENST00000540747 PODNQ7Z5L7 613 aa9.48□□□□□ -0.89
YBX3-209ENST00000540747 MYD88Q99836 296 aa9.48□□□□□ -0.89
YBX3-209ENST00000540747 METTL22Q9BUU2 404 aaPredicted RBP9.48□□□□□ -0.89
YBX3-209ENST00000540747 CFHR5Q9BXR6 569 aa9.48□□□□□ -0.89
YBX3-209ENST00000540747 IFT57Q9NWB7 429 aa9.48□□□□□ -0.89
YBX3-209ENST00000540747 ANKIB1Q9P2G1 1089 aa9.48□□□□□ -0.89
YBX3-209ENST00000540747 HPS5Q9UPZ3 1129 aa9.48□□□□□ -0.89
YBX3-209ENST00000540747 USP17L3A6NCW0 530 aa9.47□□□□□ -0.89
YBX3-209ENST00000540747 USP17L4A6NCW7 530 aa9.47□□□□□ -0.89
YBX3-209ENST00000540747 IGKV5-2P06315 115 aa9.47□□□□□ -0.89
YBX3-209ENST00000540747 ATP2B4P23634 1241 aa9.47□□□□□ -0.89
YBX3-209ENST00000540747 TM4SF4P48230 202 aa9.47□□□□□ -0.89
YBX3-209ENST00000540747 CTSWP56202 376 aa9.47□□□□□ -0.89
YBX3-209ENST00000540747 NBPF9Q3BBW0 867 aa9.47□□□□□ -0.89
YBX3-209ENST00000540747 PRPF38BQ5VTL8 546 aaKnown RBP9.47□□□□□ -0.89
YBX3-209ENST00000540747 USP17L1Q7RTZ2 530 aa9.47□□□□□ -0.89
YBX3-209ENST00000540747 ANKRD18AQ8IVF6 992 aa9.47□□□□□ -0.89
YBX3-209ENST00000540747 C8orf58Q8NAV2 365 aa9.47□□□□□ -0.89
YBX3-209ENST00000540747 JARID2Q92833 1246 aaPredicted RBP9.47□□□□□ -0.89
YBX3-209ENST00000540747 ZBED3Q96IU2 234 aaPredicted RBP9.47□□□□□ -0.89
YBX3-209ENST00000540747 CWC25Q9NXE8 425 aaPredicted RBP9.47□□□□□ -0.89
YBX3-209ENST00000540747 UBE2Q2LH0YL09 131 aa9.46□□□□□ -0.9
YBX3-209ENST00000540747 WNT10BO00744 389 aa9.46□□□□□ -0.9
YBX3-209ENST00000540747 PKN2Q16513 984 aaKnown RBP9.46□□□□□ -0.9
YBX3-209ENST00000540747 TTLL11Q8NHH1 800 aa9.46□□□□□ -0.9
YBX3-209ENST00000540747 ZNF296Q8WUU4 475 aaPredicted RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms