RNA–Protein interactions for RNA: ENST00000540699.1

ATL3-204, Transcript of atlastin GTPase 3, humanhuman

TSL 3

Gene ATL3, Length 714 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-204ENST00000540699 LMNB1P20700 586 aa13.23□□□□□ -0.29
ATL3-204ENST00000540699 HDAC1Q13547 482 aaPredicted RBP13.23□□□□□ -0.29
ATL3-204ENST00000540699 COL13A1Q5TAT6 717 aaPredicted RBP13.23□□□□□ -0.29
ATL3-204ENST00000540699 ANKRD44Q8N8A2 993 aa13.23□□□□□ -0.29
ATL3-204ENST00000540699 CELF1Q92879 486 aaKnown RBP13.23□□□□□ -0.29
ATL3-204ENST00000540699 MEIS3Q99687 375 aa13.23□□□□□ -0.29
ATL3-204ENST00000540699 RRAGCQ9HB90 399 aa13.23□□□□□ -0.29
ATL3-204ENST00000540699 SEC31BQ9NQW1 1179 aa13.23□□□□□ -0.29
ATL3-204ENST00000540699 ATP6V0A2Q9Y487 856 aa13.23□□□□□ -0.29
ATL3-204ENST00000540699 NFKBIEO00221 500 aa13.22□□□□□ -0.29
ATL3-204ENST00000540699 GNAI3P08754 354 aa13.22□□□□□ -0.29
ATL3-204ENST00000540699 UBTFL1P0CB47 393 aaPredicted RBP13.22□□□□□ -0.29
ATL3-204ENST00000540699 RPS8P62241 208 aaKnown RBP13.22□□□□□ -0.29
ATL3-204ENST00000540699 FAM161AQ3B820 660 aa13.22□□□□□ -0.29
ATL3-204ENST00000540699 GRIPAP1Q4V328 841 aa13.22□□□□□ -0.29
ATL3-204ENST00000540699 CCDC93Q567U6 631 aa13.22□□□□□ -0.29
ATL3-204ENST00000540699 LMBR1LQ6UX01 489 aa13.22□□□□□ -0.29
ATL3-204ENST00000540699 SP8Q8IXZ3 490 aa13.22□□□□□ -0.29
ATL3-204ENST00000540699 BICC1Q9H694 974 aaKnown RBP13.22□□□□□ -0.29
ATL3-204ENST00000540699 HDAC5Q9UQL6 1122 aa13.22□□□□□ -0.29
ATL3-204ENST00000540699 DUOX1Q9NRD9 1551 aa13.22□□□□□ -0.29
ATL3-204ENST00000540699 ITGA6P23229 1130 aa13.21□□□□□ -0.29
ATL3-204ENST00000540699 CCDC85AQ96PX6 553 aaPredicted RBP13.21□□□□□ -0.29
ATL3-204ENST00000540699 CDC5LQ99459 802 aaKnown RBP13.21□□□□□ -0.29
ATL3-204ENST00000540699 HTRA3P83110 453 aa13.2□□□□□ -0.3
ATL3-204ENST00000540699 OLFM4Q6UX06 510 aa13.2□□□□□ -0.3
ATL3-204ENST00000540699 SLC51AQ86UW1 340 aa13.2□□□□□ -0.3
ATL3-204ENST00000540699 ANKRD18AQ8IVF6 992 aa13.2□□□□□ -0.3
ATL3-204ENST00000540699 SIRT2Q8IXJ6 389 aa13.2□□□□□ -0.3
ATL3-204ENST00000540699 RTKN2Q8IZC4 609 aa13.2□□□□□ -0.3
ATL3-204ENST00000540699 PSMD1Q99460 953 aa13.2□□□□□ -0.3
ATL3-204ENST00000540699 RWDD1Q9H446 243 aaPredicted RBP13.2□□□□□ -0.3
ATL3-204ENST00000540699 C1orf115Q9H7X2 142 aa13.2□□□□□ -0.3
ATL3-204ENST00000540699 BSDC1Q9NW68 430 aaPredicted RBP13.2□□□□□ -0.3
ATL3-204ENST00000540699 LRRFIP2Q9Y608 721 aaKnown RBP13.2□□□□□ -0.3
ATL3-204ENST00000540699 ANKRD18BA2A2Z9 1011 aa13.19□□□□□ -0.3
ATL3-204ENST00000540699 GLTPD2A6NH11 291 aa13.19□□□□□ -0.3
ATL3-204ENST00000540699 IFIT5Q13325 482 aaKnown RBP13.19□□□□□ -0.3
ATL3-204ENST00000540699 MTX1Q13505 466 aa13.19□□□□□ -0.3
ATL3-204ENST00000540699 RTFDC1Q9BY42 306 aaPredicted RBP13.19□□□□□ -0.3
ATL3-204ENST00000540699 ZNF219Q9P2Y4 722 aaPredicted RBP13.19□□□□□ -0.3
ATL3-204ENST00000540699 GNAI2P04899 355 aa13.18□□□□□ -0.3
ATL3-204ENST00000540699 FKBP4Q02790 459 aaKnown RBP eCLIP13.18□□□□□ -0.3
ATL3-204ENST00000540699 CCDC57Q2TAC2 916 aa13.18□□□□□ -0.3
ATL3-204ENST00000540699 SMC5Q8IY18 1101 aa13.18□□□□□ -0.3
ATL3-204ENST00000540699 SMC1BQ8NDV3 1235 aa13.18□□□□□ -0.3
ATL3-204ENST00000540699 TAOK3Q9H2K8 898 aa13.18□□□□□ -0.3
ATL3-204ENST00000540699 PODXL2Q9NZ53 605 aa13.18□□□□□ -0.3
ATL3-204ENST00000540699 IGHMBP2P38935 993 aaKnown RBP13.17□□□□□ -0.3
ATL3-204ENST00000540699 RFX5P48382 616 aaPredicted RBP13.17□□□□□ -0.3
ATL3-204ENST00000540699 CEP85Q6P2H3 762 aa13.17□□□□□ -0.3
ATL3-204ENST00000540699 TNS4Q8IZW8 715 aa13.17□□□□□ -0.3
ATL3-204ENST00000540699 TMX4Q9H1E5 349 aaPredicted RBP13.17□□□□□ -0.3
ATL3-204ENST00000540699 VEGFAP15692 232 aaPredicted RBP13.16□□□□□ -0.3
ATL3-204ENST00000540699 RPAP2Q8IXW5 612 aaPredicted RBP13.16□□□□□ -0.3
ATL3-204ENST00000540699 MPNDQ8N594 471 aa13.16□□□□□ -0.3
ATL3-204ENST00000540699 VPS33BQ9H267 617 aa13.16□□□□□ -0.3
ATL3-204ENST00000540699 MINPP1Q9UNW1 487 aa13.16□□□□□ -0.3
ATL3-204ENST00000540699 CHMP3Q9Y3E7 222 aa13.16□□□□□ -0.3
ATL3-204ENST00000540699 COL4A5P29400 1685 aa13.15□□□□□ -0.3
ATL3-204ENST00000540699 GPSM2P81274 684 aa13.15□□□□□ -0.3
ATL3-204ENST00000540699 PTPN12Q05209 780 aaKnown RBP13.15□□□□□ -0.3
ATL3-204ENST00000540699 DPP8Q6V1X1 898 aaPredicted RBP13.15□□□□□ -0.3
ATL3-204ENST00000540699 ZNF594Q96JF6 807 aaPredicted RBP13.15□□□□□ -0.3
ATL3-204ENST00000540699 PSME4Q14997 1843 aa13.15□□□□□ -0.3
ATL3-204ENST00000540699 XDHP47989 1333 aa13.14□□□□□ -0.31
ATL3-204ENST00000540699 POTECB2RU33 542 aa13.14□□□□□ -0.31
ATL3-204ENST00000540699 LDHAL6AQ6ZMR3 332 aa13.14□□□□□ -0.31
ATL3-204ENST00000540699 SKAP1Q86WV1 359 aa13.14□□□□□ -0.31
ATL3-204ENST00000540699 SUPT20HQ8NEM7 779 aa13.14□□□□□ -0.31
ATL3-204ENST00000540699 MPHOSPH8Q99549 860 aa13.14□□□□□ -0.31
ATL3-204ENST00000540699 COPRSQ9NQ92 184 aa13.14□□□□□ -0.31
ATL3-204ENST00000540699 FBXO3Q9UK99 471 aa13.14□□□□□ -0.31
ATL3-204ENST00000540699 RIPOR2Q9Y4F9 1068 aa13.14□□□□□ -0.31
ATL3-204ENST00000540699 SCN4AP35499 1836 aa13.13□□□□□ -0.31
ATL3-204ENST00000540699 IARSP41252 1262 aaKnown RBP13.13□□□□□ -0.31
ATL3-204ENST00000540699 TAF7LQ5H9L4 462 aa13.13□□□□□ -0.31
ATL3-204ENST00000540699 TBC1D16Q8TBP0 767 aa13.13□□□□□ -0.31
ATL3-204ENST00000540699 GCC1Q96CN9 775 aa13.13□□□□□ -0.31
ATL3-204ENST00000540699 ANKRD2Q9GZV1 360 aa13.13□□□□□ -0.31
ATL3-204ENST00000540699 ZNF277Q9NRM2 450 aaPredicted RBP13.13□□□□□ -0.31
ATL3-204ENST00000540699 POLLQ9UGP5 575 aa13.13□□□□□ -0.31
ATL3-204ENST00000540699 NSFL1CQ9UNZ2 370 aaKnown RBP13.13□□□□□ -0.31
ATL3-204ENST00000540699 ZNF646O15015 1829 aaPredicted RBP13.12□□□□□ -0.31
ATL3-204ENST00000540699 SRGAP3O43295 1099 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 ATP8B2P98198 1209 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 CHRNDQ07001 517 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 KIAA2012Q0VF49 1180 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 POLA2Q14181 598 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 DPY19L2Q6NUT2 758 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 SSH3Q8TE77 659 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 PUS3Q9BZE2 481 aaKnown RBP13.12□□□□□ -0.31
ATL3-204ENST00000540699 DCTPP1Q9H773 170 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 CNNM1Q9NRU3 951 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 LEMD3Q9Y2U8 911 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 SCN9AQ15858 1988 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 MROH5Q6ZUA9 1318 aa13.12□□□□□ -0.31
ATL3-204ENST00000540699 ARAP2Q8WZ64 1704 aa13.11□□□□□ -0.31
ATL3-204ENST00000540699 PNMA6EA0A0J9YXQ4 647 aa13.11□□□□□ -0.31
ATL3-204ENST00000540699 EYA2O00167 538 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms