RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 TUBB2AQ13885 445 aa14.35□□□□□ -0.11
USP3-203ENST00000538686 CEP85Q6P2H3 762 aa14.35□□□□□ -0.11
USP3-203ENST00000538686 ANKRD18AQ8IVF6 992 aa14.35□□□□□ -0.11
USP3-203ENST00000538686 TUBB2BQ9BVA1 445 aa14.35□□□□□ -0.11
USP3-203ENST00000538686 VIPAS39Q9H9C1 493 aa14.35□□□□□ -0.11
USP3-203ENST00000538686 SPATS2LQ9NUQ6 558 aaKnown RBP14.35□□□□□ -0.11
USP3-203ENST00000538686 L1RE1Q9UN81 338 aa14.35□□□□□ -0.11
USP3-203ENST00000538686 FAM169AQ9Y6X4 670 aa14.35□□□□□ -0.11
USP3-203ENST00000538686 EFCAB6Q5THR3 1501 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 CDC42BPBQ9Y5S2 1711 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 GIGYF1O75420 1035 aaPredicted RBP14.34□□□□□ -0.11
USP3-203ENST00000538686 GRIK3Q13003 919 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 ARMCX5Q6P1M9 558 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 CPLX2Q6PUV4 134 aaKnown RBP14.34□□□□□ -0.11
USP3-203ENST00000538686 DHX40Q8IX18 779 aaKnown RBP14.34□□□□□ -0.11
USP3-203ENST00000538686 TEX13AQ9BXU3 409 aaPredicted RBP14.34□□□□□ -0.11
USP3-203ENST00000538686 FAM204AQ9H8W3 233 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 PPP6R1Q9UPN7 881 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 CHMP3Q9Y3E7 222 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 NEURL4Q96JN8 1562 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 ABCA9Q8IUA7 1624 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 HECW2Q9P2P5 1572 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 ANKRD65E5RJM6 399 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 RWDD2BP57060 319 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 WLSQ5T9L3 541 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 RUFY3Q7L099 469 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 MSANTD4Q8NCY6 345 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 ARMC2Q8NEN0 867 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 ODF2LQ9ULJ1 636 aa14.34□□□□□ -0.11
USP3-203ENST00000538686 NRXN1Q9ULB1 1477 aa14.33□□□□□ -0.12
USP3-203ENST00000538686 SHOX2O60902 331 aaPredicted RBP14.33□□□□□ -0.12
USP3-203ENST00000538686 INHBEP58166 350 aa14.33□□□□□ -0.12
USP3-203ENST00000538686 TRAF1Q13077 416 aa14.33□□□□□ -0.12
USP3-203ENST00000538686 SF3B2Q13435 895 aaKnown RBP14.33□□□□□ -0.12
USP3-203ENST00000538686 FBXW10Q5XX13 1052 aa14.33□□□□□ -0.12
USP3-203ENST00000538686 LEO1Q8WVC0 666 aaPredicted RBP14.33□□□□□ -0.12
USP3-203ENST00000538686 TATDN2Q93075 761 aa14.33□□□□□ -0.12
USP3-203ENST00000538686 CCDC102AQ96A19 550 aa14.33□□□□□ -0.12
USP3-203ENST00000538686 THUMPD2Q9BTF0 503 aaKnown RBP14.33□□□□□ -0.12
USP3-203ENST00000538686 NR1I2O75469 434 aa14.32□□□□□ -0.12
USP3-203ENST00000538686 C11orf57Q6ZUT1 292 aaPredicted RBP14.32□□□□□ -0.12
USP3-203ENST00000538686 AARSP49588 968 aaKnown RBP eCLIP14.32□□□□□ -0.12
USP3-203ENST00000538686 TMC6Q7Z403 805 aa14.32□□□□□ -0.12
USP3-203ENST00000538686 ZKSCAN4Q969J2 545 aaPredicted RBP14.32□□□□□ -0.12
USP3-203ENST00000538686 BPIFA3Q9BQP9 254 aa14.32□□□□□ -0.12
USP3-203ENST00000538686 AOX1Q06278 1338 aa14.31□□□□□ -0.12
USP3-203ENST00000538686 RPGRIP1LQ68CZ1 1315 aa14.31□□□□□ -0.12
USP3-203ENST00000538686 SHTN1A0MZ66 631 aa14.31□□□□□ -0.12
USP3-203ENST00000538686 A6NNZ2 444 aa14.31□□□□□ -0.12
USP3-203ENST00000538686 FSBPO95073 299 aa14.31□□□□□ -0.12
USP3-203ENST00000538686 PAX7P23759 505 aa14.31□□□□□ -0.12
USP3-203ENST00000538686 TUBB8Q3ZCM7 444 aa14.31□□□□□ -0.12
USP3-203ENST00000538686 LARP1BQ659C4 914 aaKnown RBP14.31□□□□□ -0.12
USP3-203ENST00000538686 TRPM2O94759 1503 aa14.31□□□□□ -0.12
USP3-203ENST00000538686 HMGB1P09429 215 aaKnown RBP14.3□□□□□ -0.12
USP3-203ENST00000538686 CHMP4BP1P59074 171 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 TBC1D8BQ0IIM8 1120 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 OS9Q13438 667 aaPredicted RBP14.3□□□□□ -0.12
USP3-203ENST00000538686 CASP8Q14790 479 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 RBBP5Q15291 538 aaKnown RBP14.3□□□□□ -0.12
USP3-203ENST00000538686 ZC3H12AQ5D1E8 599 aaKnown RBP14.3□□□□□ -0.12
USP3-203ENST00000538686 TTC19Q6DKK2 380 aaPredicted RBP14.3□□□□□ -0.12
USP3-203ENST00000538686 SRGAP1Q7Z6B7 1085 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 IQCA1Q86XH1 822 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 CCDC50Q8IVM0 306 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 EPC1Q9H2F5 836 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 COL3A1P02461 1466 aaPredicted RBP14.3□□□□□ -0.12
USP3-203ENST00000538686 KIAA0232Q92628 1395 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 ANKRD18BA2A2Z9 1011 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 KIF4BQ2VIQ3 1234 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 WWC2Q6AWC2 1192 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 B4GALNT4Q76KP1 1039 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 XAGE2Q96GT9 111 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 CDK12Q9NYV4 1490 aaPredicted RBP14.3□□□□□ -0.12
USP3-203ENST00000538686 URB2Q14146 1524 aaKnown RBP14.3□□□□□ -0.12
USP3-203ENST00000538686 SALL3Q9BXA9 1300 aa14.3□□□□□ -0.12
USP3-203ENST00000538686 RTN2O75298 545 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 ARHGAP25P42331 645 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 CCDC83Q8IWF9 413 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 CCDC26Q8TAB7 109 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 ZNF483Q8TF39 744 aaPredicted RBP14.29□□□□□ -0.12
USP3-203ENST00000538686 SLC24A3Q9HC58 644 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 STAG3Q9UJ98 1225 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 SNX14Q9Y5W7 946 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 GLI2P10070 1586 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 PES1O00541 588 aaKnown RBP14.29□□□□□ -0.12
USP3-203ENST00000538686 ARHGAP6O43182 974 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 N4BP1O75113 896 aaKnown RBP14.29□□□□□ -0.12
USP3-203ENST00000538686 RNF40O75150 1001 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 KIAA0754O94854 1291 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 PLCB4Q15147 1175 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 PDCD2Q16342 344 aaPredicted RBP14.29□□□□□ -0.12
USP3-203ENST00000538686 KIAA1328Q86T90 577 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 SYTL4Q96C24 671 aaPredicted RBP14.29□□□□□ -0.12
USP3-203ENST00000538686 HYPKQ9NX55 129 aa14.29□□□□□ -0.12
USP3-203ENST00000538686 SOS1Q07889 1333 aaPredicted RBP14.29□□□□□ -0.12
USP3-203ENST00000538686 CHD2O14647 1828 aaKnown RBP14.28□□□□□ -0.12
USP3-203ENST00000538686 SLC8A3P57103 927 aa14.28□□□□□ -0.12
USP3-203ENST00000538686 GNG11P61952 73 aa14.28□□□□□ -0.12
USP3-203ENST00000538686 AOPEPQ8N6M6 819 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms