RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 LARGE2Q8N3Y3 721 aa14.85□□□□□ -0.03
CLIP1-208ENST00000537004 MPNDQ8N594 471 aa14.85□□□□□ -0.03
CLIP1-208ENST00000537004 CDHR2Q9BYE9 1310 aa14.84□□□□□ -0.03
CLIP1-208ENST00000537004 PPIP5K2O43314 1243 aa14.84□□□□□ -0.03
CLIP1-208ENST00000537004 CASP7P55210 303 aa14.84□□□□□ -0.03
CLIP1-208ENST00000537004 CTSWP56202 376 aa14.84□□□□□ -0.03
CLIP1-208ENST00000537004 CCDC152Q4G0S7 254 aa14.84□□□□□ -0.03
CLIP1-208ENST00000537004 TTLL11Q8NHH1 800 aa14.84□□□□□ -0.03
CLIP1-208ENST00000537004 C1orf115Q9H7X2 142 aa14.84□□□□□ -0.03
CLIP1-208ENST00000537004 NSFL1CQ9UNZ2 370 aaKnown RBP14.84□□□□□ -0.03
CLIP1-208ENST00000537004 FZD9O00144 591 aa14.83□□□□□ -0.03
CLIP1-208ENST00000537004 VEGFAP15692 232 aaPredicted RBP14.83□□□□□ -0.03
CLIP1-208ENST00000537004 C16orf71Q8IYS4 520 aaPredicted RBP14.83□□□□□ -0.03
CLIP1-208ENST00000537004 JDP2Q8WYK2 163 aa14.83□□□□□ -0.03
CLIP1-208ENST00000537004 GREM2Q9H772 168 aa14.83□□□□□ -0.03
CLIP1-208ENST00000537004 GPSM2P81274 684 aa14.83□□□□□ -0.04
CLIP1-208ENST00000537004 GPR101Q96P66 508 aaPredicted RBP14.83□□□□□ -0.04
CLIP1-208ENST00000537004 RTFDC1Q9BY42 306 aaPredicted RBP14.83□□□□□ -0.04
CLIP1-208ENST00000537004 HSP90B1P14625 803 aaKnown RBP14.82□□□□□ -0.04
CLIP1-208ENST00000537004 GRIPAP1Q4V328 841 aa14.82□□□□□ -0.04
CLIP1-208ENST00000537004 IPO9Q96P70 1041 aaKnown RBP14.82□□□□□ -0.04
CLIP1-208ENST00000537004 POTEIP0CG38 1075 aa14.82□□□□□ -0.04
CLIP1-208ENST00000537004 POTEJP0CG39 1038 aa14.82□□□□□ -0.04
CLIP1-208ENST00000537004 POLLQ9UGP5 575 aa14.82□□□□□ -0.04
CLIP1-208ENST00000537004 WTIPA6NIX2 430 aaPredicted RBP14.81□□□□□ -0.04
CLIP1-208ENST00000537004 GJA3Q9Y6H8 435 aa14.81□□□□□ -0.04
CLIP1-208ENST00000537004 DICER1Q9UPY3 1922 aaKnown RBP14.8□□□□□ -0.04
CLIP1-208ENST00000537004 TMC4Q7Z404 712 aa14.8□□□□□ -0.04
CLIP1-208ENST00000537004 NIM1KQ8IY84 436 aa14.8□□□□□ -0.04
CLIP1-208ENST00000537004 C6orf229H3BNL8 230 aa14.8□□□□□ -0.04
CLIP1-208ENST00000537004 RIMBP2O15034 1052 aa14.8□□□□□ -0.04
CLIP1-208ENST00000537004 EPHA10Q5JZY3 1008 aa14.8□□□□□ -0.04
CLIP1-208ENST00000537004 ANKRD18AQ8IVF6 992 aa14.8□□□□□ -0.04
CLIP1-208ENST00000537004 SIRT2Q8IXJ6 389 aa14.8□□□□□ -0.04
CLIP1-208ENST00000537004 DUOX1Q9NRD9 1551 aa14.79□□□□□ -0.04
CLIP1-208ENST00000537004 NUCB1Q02818 461 aa14.79□□□□□ -0.04
CLIP1-208ENST00000537004 KIAA2012Q0VF49 1180 aa14.79□□□□□ -0.04
CLIP1-208ENST00000537004 SUPT20HQ8NEM7 779 aa14.79□□□□□ -0.04
CLIP1-208ENST00000537004 RBM46Q8TBY0 533 aaKnown RBP14.79□□□□□ -0.04
CLIP1-208ENST00000537004 EIF6P56537 245 aaKnown RBP14.78□□□□□ -0.04
CLIP1-208ENST00000537004 WASHC4Q2M389 1173 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 TBC1D16Q8TBP0 767 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 GCC1Q96CN9 775 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 L3MBTL3Q96JM7 780 aaPredicted RBP14.78□□□□□ -0.04
CLIP1-208ENST00000537004 PLA2G12BQ9BX93 195 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 SRCIN1Q9C0H9 1055 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 ANKIB1Q9P2G1 1089 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 GRM8O00222 908 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 RAD17O75943 681 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 HSPA6P17066 643 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 ITGA6P23229 1130 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 GPC2Q8N158 579 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 DBNDD1Q9H9R9 158 aa14.78□□□□□ -0.04
CLIP1-208ENST00000537004 C9orf78Q9NZ63 289 aaPredicted RBP14.78□□□□□ -0.04
CLIP1-208ENST00000537004 YDJCA8MPS7 323 aa14.77□□□□□ -0.04
CLIP1-208ENST00000537004 CSF1RP07333 972 aa14.77□□□□□ -0.04
CLIP1-208ENST00000537004 NBPF7P0C2Y1 421 aaPredicted RBP14.77□□□□□ -0.04
CLIP1-208ENST00000537004 CCT4P50991 539 aaKnown RBP14.77□□□□□ -0.04
CLIP1-208ENST00000537004 HTRA3P83110 453 aa14.77□□□□□ -0.04
CLIP1-208ENST00000537004 FOXO4P98177 505 aa14.77□□□□□ -0.04
CLIP1-208ENST00000537004 CXCL9Q07325 125 aa14.77□□□□□ -0.04
CLIP1-208ENST00000537004 CDC5LQ99459 802 aaKnown RBP14.77□□□□□ -0.04
CLIP1-208ENST00000537004 TAF1DQ9H5J8 278 aaPredicted RBP14.77□□□□□ -0.04
CLIP1-208ENST00000537004 KCNQ5Q9NR82 932 aa14.77□□□□□ -0.04
CLIP1-208ENST00000537004 ZNRF3Q9ULT6 936 aa14.77□□□□□ -0.04
CLIP1-208ENST00000537004 UFL1O94874 794 aa14.76□□□□□ -0.05
CLIP1-208ENST00000537004 DOK7Q18PE1 504 aa14.76□□□□□ -0.05
CLIP1-208ENST00000537004 CHMP3Q9Y3E7 222 aa14.76□□□□□ -0.05
CLIP1-208ENST00000537004 WDR90Q96KV7 1748 aa14.76□□□□□ -0.05
CLIP1-208ENST00000537004 ALDH1L1O75891 902 aa14.76□□□□□ -0.05
CLIP1-208ENST00000537004 LMBR1LQ6UX01 489 aa14.76□□□□□ -0.05
CLIP1-208ENST00000537004 CHD1LQ86WJ1 897 aa14.76□□□□□ -0.05
CLIP1-208ENST00000537004 MEIS3Q99687 375 aa14.76□□□□□ -0.05
CLIP1-208ENST00000537004 VPS33BQ9H267 617 aa14.76□□□□□ -0.05
CLIP1-208ENST00000537004 MINPP1Q9UNW1 487 aa14.76□□□□□ -0.05
CLIP1-208ENST00000537004 NOP58Q9Y2X3 529 aaKnown RBP14.76□□□□□ -0.05
CLIP1-208ENST00000537004 LRRC37AA6NMS7 1700 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 SCNN1DP51172 638 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 EAPPQ56P03 285 aaPredicted RBP14.75□□□□□ -0.05
CLIP1-208ENST00000537004 ERICH6Q7L0X2 663 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 KAZALD1Q96I82 304 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 SUCLG2Q96I99 432 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 LNPKQ9C0E8 428 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 BSDC1Q9NW68 430 aaPredicted RBP14.75□□□□□ -0.05
CLIP1-208ENST00000537004 PODXL2Q9NZ53 605 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 RTL9Q8NET4 1388 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 IQCA1LA6NCM1 817 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 EPS15P42566 896 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 ANKRD44Q8N8A2 993 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 SMC1BQ8NDV3 1235 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 HACL1Q9UJ83 578 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 GGA1Q9UJY5 639 aa14.75□□□□□ -0.05
CLIP1-208ENST00000537004 EPHX2P34913 555 aa14.74□□□□□ -0.05
CLIP1-208ENST00000537004 ANKRD45Q5TZF3 282 aa14.74□□□□□ -0.05
CLIP1-208ENST00000537004 RPAP2Q8IXW5 612 aaPredicted RBP14.74□□□□□ -0.05
CLIP1-208ENST00000537004 ZNF594Q96JF6 807 aaPredicted RBP14.74□□□□□ -0.05
CLIP1-208ENST00000537004 SNAP23O00161 211 aa14.73□□□□□ -0.05
CLIP1-208ENST00000537004 IGHMBP2P38935 993 aaKnown RBP14.73□□□□□ -0.05
CLIP1-208ENST00000537004 FSTL1Q12841 308 aa14.73□□□□□ -0.05
CLIP1-208ENST00000537004 CEP85Q6P2H3 762 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms