RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 SP8Q8IXZ3 490 aa17.5■□□□□ 0.39
USF1-209ENST00000529476 CHMP4BQ9H444 224 aaKnown RBP17.5■□□□□ 0.39
USF1-209ENST00000529476 FER1L6Q2WGJ9 1857 aa17.5■□□□□ 0.39
USF1-209ENST00000529476 RFX5P48382 616 aaPredicted RBP17.49■□□□□ 0.39
USF1-209ENST00000529476 IRX6P78412 446 aaPredicted RBP17.49■□□□□ 0.39
USF1-209ENST00000529476 MTX1Q13505 466 aa17.49■□□□□ 0.39
USF1-209ENST00000529476 TAF7LQ5H9L4 462 aa17.49■□□□□ 0.39
USF1-209ENST00000529476 TMC4Q7Z404 712 aa17.49■□□□□ 0.39
USF1-209ENST00000529476 KLHDC4Q8TBB5 520 aa17.49■□□□□ 0.39
USF1-209ENST00000529476 PCNTO95613 3336 aa17.48■□□□□ 0.39
USF1-209ENST00000529476 PNMA6EA0A0J9YXQ4 647 aa17.48■□□□□ 0.39
USF1-209ENST00000529476 SRGAP3O43295 1099 aa17.48■□□□□ 0.39
USF1-209ENST00000529476 CCDC93Q567U6 631 aa17.48■□□□□ 0.39
USF1-209ENST00000529476 MPHOSPH8Q99549 860 aa17.48■□□□□ 0.39
USF1-209ENST00000529476 BSDC1Q9NW68 430 aaPredicted RBP17.48■□□□□ 0.39
USF1-209ENST00000529476 SNED1Q8TER0 1413 aa17.47■□□□□ 0.39
USF1-209ENST00000529476 ATP8B2P98198 1209 aa17.47■□□□□ 0.39
USF1-209ENST00000529476 SOGA3Q5TF21 947 aa17.47■□□□□ 0.39
USF1-209ENST00000529476 CEP85Q6P2H3 762 aa17.47■□□□□ 0.39
USF1-209ENST00000529476 RRAGCQ9HB90 399 aa17.47■□□□□ 0.39
USF1-209ENST00000529476 A0A1B0GUL6 1792 aa17.47■□□□□ 0.39
USF1-209ENST00000529476 HSPA1AP0DMV8 641 aaKnown RBP17.46■□□□□ 0.39
USF1-209ENST00000529476 HSPA1BP0DMV9 641 aaKnown RBP17.46■□□□□ 0.39
USF1-209ENST00000529476 GPSM2P81274 684 aa17.46■□□□□ 0.39
USF1-209ENST00000529476 PTPN12Q05209 780 aaKnown RBP17.46■□□□□ 0.39
USF1-209ENST00000529476 CC2D2BQ6DHV5 1058 aa17.46■□□□□ 0.39
USF1-209ENST00000529476 LDHAL6AQ6ZMR3 332 aa17.46■□□□□ 0.39
USF1-209ENST00000529476 EXOC6Q8TAG9 804 aa17.46■□□□□ 0.39
USF1-209ENST00000529476 PUS3Q9BZE2 481 aaKnown RBP17.46■□□□□ 0.39
USF1-209ENST00000529476 TMX4Q9H1E5 349 aaPredicted RBP17.46■□□□□ 0.39
USF1-209ENST00000529476 MINPP1Q9UNW1 487 aa17.46■□□□□ 0.39
USF1-209ENST00000529476 PA2G4Q9UQ80 394 aaKnown RBP17.46■□□□□ 0.39
USF1-209ENST00000529476 LTBP1Q14766 1721 aa17.46■□□□□ 0.39
USF1-209ENST00000529476 NFKBIEO00221 500 aa17.45■□□□□ 0.38
USF1-209ENST00000529476 RASSF7Q02833 373 aa17.45■□□□□ 0.38
USF1-209ENST00000529476 RTKN2Q8IZC4 609 aa17.45■□□□□ 0.38
USF1-209ENST00000529476 CNNM1Q9NRU3 951 aa17.45■□□□□ 0.38
USF1-209ENST00000529476 CCDC88AQ3V6T2 1871 aa17.44■□□□□ 0.38
USF1-209ENST00000529476 POLA2Q14181 598 aa17.44■□□□□ 0.38
USF1-209ENST00000529476 LRRC24Q50LG9 513 aa17.44■□□□□ 0.38
USF1-209ENST00000529476 MPNDQ8N594 471 aa17.44■□□□□ 0.38
USF1-209ENST00000529476 SSH3Q8TE77 659 aa17.44■□□□□ 0.38
USF1-209ENST00000529476 SIL1Q9H173 461 aa17.44■□□□□ 0.38
USF1-209ENST00000529476 NSFL1CQ9UNZ2 370 aaKnown RBP17.44■□□□□ 0.38
USF1-209ENST00000529476 DUOX1Q9NRD9 1551 aa17.44■□□□□ 0.38
USF1-209ENST00000529476 SBF1O95248 1867 aa17.44■□□□□ 0.38
USF1-209ENST00000529476 FKBP4Q02790 459 aaKnown RBP eCLIP17.43■□□□□ 0.38
USF1-209ENST00000529476 CHRNDQ07001 517 aa17.43■□□□□ 0.38
USF1-209ENST00000529476 DPP8Q6V1X1 898 aaPredicted RBP17.43■□□□□ 0.38
USF1-209ENST00000529476 SIRT2Q8IXJ6 389 aa17.43■□□□□ 0.38
USF1-209ENST00000529476 RPAP2Q8IXW5 612 aaPredicted RBP17.43■□□□□ 0.38
USF1-209ENST00000529476 TAOK3Q9H2K8 898 aa17.43■□□□□ 0.38
USF1-209ENST00000529476 COPRSQ9NQ92 184 aa17.43■□□□□ 0.38
USF1-209ENST00000529476 ANKIB1Q9P2G1 1089 aa17.43■□□□□ 0.38
USF1-209ENST00000529476 RIPOR2Q9Y4F9 1068 aa17.43■□□□□ 0.38
USF1-209ENST00000529476 KDM2BQ8NHM5 1336 aa17.43■□□□□ 0.38
USF1-209ENST00000529476 EYA2O00167 538 aa17.42■□□□□ 0.38
USF1-209ENST00000529476 GRIPAP1Q4V328 841 aa17.42■□□□□ 0.38
USF1-209ENST00000529476 HELBQ8NG08 1087 aaPredicted RBP17.42■□□□□ 0.38
USF1-209ENST00000529476 TAF5LO75529 589 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 SLC34A2O95436 690 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 ATG9AQ7Z3C6 839 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 SMC1BQ8NDV3 1235 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 PSMD1Q99460 953 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 RTFDC1Q9BY42 306 aaPredicted RBP17.41■□□□□ 0.38
USF1-209ENST00000529476 ANKRD2Q9GZV1 360 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 PODXL2Q9NZ53 605 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 RNF181Q9P0P0 153 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 POLLQ9UGP5 575 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 PCDHB15Q9Y5E8 787 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 XDHP47989 1333 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 LTBP3Q9NS15 1303 aa17.41■□□□□ 0.38
USF1-209ENST00000529476 WTIPA6NIX2 430 aaPredicted RBP17.4■□□□□ 0.38
USF1-209ENST00000529476 CIAO1O76071 339 aa17.4■□□□□ 0.38
USF1-209ENST00000529476 TBC1D16Q8TBP0 767 aa17.4■□□□□ 0.38
USF1-209ENST00000529476 GPR101Q96P66 508 aaPredicted RBP17.4■□□□□ 0.38
USF1-209ENST00000529476 ZNF277Q9NRM2 450 aaPredicted RBP17.4■□□□□ 0.38
USF1-209ENST00000529476 GGA1Q9UJY5 639 aa17.4■□□□□ 0.38
USF1-209ENST00000529476 MROH5Q6ZUA9 1318 aa17.4■□□□□ 0.38
USF1-209ENST00000529476 C6orf229H3BNL8 230 aa17.39■□□□□ 0.37
USF1-209ENST00000529476 UFL1O94874 794 aa17.39■□□□□ 0.37
USF1-209ENST00000529476 METTL24Q5JXM2 366 aa17.39■□□□□ 0.37
USF1-209ENST00000529476 FBXO3Q9UK99 471 aa17.39■□□□□ 0.37
USF1-209ENST00000529476 SNAP23O00161 211 aa17.38■□□□□ 0.37
USF1-209ENST00000529476 HMMRO75330 724 aa17.38■□□□□ 0.37
USF1-209ENST00000529476 SURF6O75683 361 aaKnown RBP17.38■□□□□ 0.37
USF1-209ENST00000529476 ATP2B4P23634 1241 aa17.38■□□□□ 0.37
USF1-209ENST00000529476 IL15P40933 162 aaPredicted RBP17.38■□□□□ 0.37
USF1-209ENST00000529476 SUPT20HQ8NEM7 779 aa17.38■□□□□ 0.37
USF1-209ENST00000529476 DICER1Q9UPY3 1922 aaKnown RBP17.38■□□□□ 0.37
USF1-209ENST00000529476 LMNB1P20700 586 aa17.37■□□□□ 0.37
USF1-209ENST00000529476 IARSP41252 1262 aaKnown RBP17.37■□□□□ 0.37
USF1-209ENST00000529476 G3BP1Q13283 466 aaKnown RBP eCLIP17.37■□□□□ 0.37
USF1-209ENST00000529476 AAMPQ13685 434 aa17.37■□□□□ 0.37
USF1-209ENST00000529476 VGLL2Q8N8G2 317 aa17.37■□□□□ 0.37
USF1-209ENST00000529476 LEMD3Q9Y2U8 911 aa17.37■□□□□ 0.37
USF1-209ENST00000529476 NOP58Q9Y2X3 529 aaKnown RBP17.37■□□□□ 0.37
USF1-209ENST00000529476 ZNF804BA4D1E1 1349 aa17.37■□□□□ 0.37
USF1-209ENST00000529476 COL4A5P29400 1685 aa17.36■□□□□ 0.37
USF1-209ENST00000529476 RIMBP2O15034 1052 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms