RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 CCDC57Q2TAC2 916 aa16.79■□□□□ 0.28
VPS28-210ENST00000529182 FTSJ3Q8IY81 847 aaKnown RBP16.79■□□□□ 0.28
VPS28-210ENST00000529182 DZIP1LQ8IYY4 767 aaKnown RBP16.79■□□□□ 0.28
VPS28-210ENST00000529182 SUPT20HQ8NEM7 779 aa16.79■□□□□ 0.28
VPS28-210ENST00000529182 TBC1D16Q8TBP0 767 aa16.79■□□□□ 0.28
VPS28-210ENST00000529182 MPHOSPH8Q99549 860 aa16.79■□□□□ 0.28
VPS28-210ENST00000529182 PODXL2Q9NZ53 605 aa16.79■□□□□ 0.28
VPS28-210ENST00000529182 LRRFIP2Q9Y608 721 aaKnown RBP16.79■□□□□ 0.28
VPS28-210ENST00000529182 LTBP1Q14766 1721 aa16.79■□□□□ 0.28
VPS28-210ENST00000529182 ZNF541Q9H0D2 1346 aa16.78■□□□□ 0.28
VPS28-210ENST00000529182 RIMBP2O15034 1052 aa16.78■□□□□ 0.28
VPS28-210ENST00000529182 UFL1O94874 794 aa16.78■□□□□ 0.28
VPS28-210ENST00000529182 KIAA2012Q0VF49 1180 aa16.78■□□□□ 0.28
VPS28-210ENST00000529182 JDP2Q8WYK2 163 aa16.78■□□□□ 0.28
VPS28-210ENST00000529182 NMRK2Q9NPI5 230 aa16.78■□□□□ 0.28
VPS28-210ENST00000529182 GGA1Q9UJY5 639 aa16.78■□□□□ 0.28
VPS28-210ENST00000529182 XDHP47989 1333 aa16.77■□□□□ 0.28
VPS28-210ENST00000529182 GLTPD2A6NH11 291 aa16.77■□□□□ 0.28
VPS28-210ENST00000529182 TAF7LQ5H9L4 462 aa16.77■□□□□ 0.28
VPS28-210ENST00000529182 PANK1Q8TE04 598 aa16.77■□□□□ 0.28
VPS28-210ENST00000529182 KDM2BQ8NHM5 1336 aa16.76■□□□□ 0.27
VPS28-210ENST00000529182 FZD9O00144 591 aa16.76■□□□□ 0.27
VPS28-210ENST00000529182 DDNO94850 711 aaPredicted RBP16.76■□□□□ 0.27
VPS28-210ENST00000529182 CHRNDQ07001 517 aa16.76■□□□□ 0.27
VPS28-210ENST00000529182 WASHC4Q2M389 1173 aa16.76■□□□□ 0.27
VPS28-210ENST00000529182 LDHAL6AQ6ZMR3 332 aa16.76■□□□□ 0.27
VPS28-210ENST00000529182 NIM1KQ8IY84 436 aa16.76■□□□□ 0.27
VPS28-210ENST00000529182 HELBQ8NG08 1087 aaPredicted RBP16.76■□□□□ 0.27
VPS28-210ENST00000529182 KLHDC4Q8TBB5 520 aa16.76■□□□□ 0.27
VPS28-210ENST00000529182 PUS3Q9BZE2 481 aaKnown RBP16.76■□□□□ 0.27
VPS28-210ENST00000529182 VPS33BQ9H267 617 aa16.76■□□□□ 0.27
VPS28-210ENST00000529182 GNAI3P08754 354 aa16.75■□□□□ 0.27
VPS28-210ENST00000529182 ATP2B4P23634 1241 aa16.75■□□□□ 0.27
VPS28-210ENST00000529182 DPY19L2Q6NUT2 758 aa16.75■□□□□ 0.27
VPS28-210ENST00000529182 ITPRIPQ8IWB1 547 aa16.75■□□□□ 0.27
VPS28-210ENST00000529182 RRAGCQ9HB90 399 aa16.75■□□□□ 0.27
VPS28-210ENST00000529182 CNNM1Q9NRU3 951 aa16.75■□□□□ 0.27
VPS28-210ENST00000529182 SNAP23O00161 211 aa16.74■□□□□ 0.27
VPS28-210ENST00000529182 TAF5LO75529 589 aa16.74■□□□□ 0.27
VPS28-210ENST00000529182 RFX5P48382 616 aaPredicted RBP16.74■□□□□ 0.27
VPS28-210ENST00000529182 DOK7Q18PE1 504 aa16.74■□□□□ 0.27
VPS28-210ENST00000529182 EYA3Q99504 573 aa16.74■□□□□ 0.27
VPS28-210ENST00000529182 DBNDD1Q9H9R9 158 aa16.74■□□□□ 0.27
VPS28-210ENST00000529182 YDJCA8MPS7 323 aa16.73■□□□□ 0.27
VPS28-210ENST00000529182 KIF3CO14782 793 aa16.73■□□□□ 0.27
VPS28-210ENST00000529182 EIF6P56537 245 aaKnown RBP16.73■□□□□ 0.27
VPS28-210ENST00000529182 LRRC24Q50LG9 513 aa16.73■□□□□ 0.27
VPS28-210ENST00000529182 ZC3H12CQ9C0D7 883 aaKnown RBP16.73■□□□□ 0.27
VPS28-210ENST00000529182 ANKRD2Q9GZV1 360 aa16.73■□□□□ 0.27
VPS28-210ENST00000529182 ZNRF3Q9ULT6 936 aa16.73■□□□□ 0.27
VPS28-210ENST00000529182 GJA3Q9Y6H8 435 aa16.73■□□□□ 0.27
VPS28-210ENST00000529182 RAD17O75943 681 aa16.72■□□□□ 0.27
VPS28-210ENST00000529182 GNAI2P04899 355 aa16.72■□□□□ 0.27
VPS28-210ENST00000529182 KLRK1P26718 216 aa16.72■□□□□ 0.27
VPS28-210ENST00000529182 C1orf115Q9H7X2 142 aa16.72■□□□□ 0.27
VPS28-210ENST00000529182 ZNF804BA4D1E1 1349 aa16.71■□□□□ 0.27
VPS28-210ENST00000529182 POTECB2RU33 542 aa16.71■□□□□ 0.27
VPS28-210ENST00000529182 ZBTB7BO15156 539 aaPredicted RBP16.71■□□□□ 0.27
VPS28-210ENST00000529182 ECE2O60344 883 aa16.71■□□□□ 0.27
VPS28-210ENST00000529182 PTPN12Q05209 780 aaKnown RBP16.71■□□□□ 0.27
VPS28-210ENST00000529182 CXCL9Q07325 125 aa16.71■□□□□ 0.27
VPS28-210ENST00000529182 C20orf194Q5TEA3 1177 aa16.71■□□□□ 0.27
VPS28-210ENST00000529182 TXNRD3Q86VQ6 643 aa16.71■□□□□ 0.27
VPS28-210ENST00000529182 KCNQ5Q9NR82 932 aa16.71■□□□□ 0.27
VPS28-210ENST00000529182 HDAC5Q9UQL6 1122 aa16.71■□□□□ 0.27
VPS28-210ENST00000529182 LEMD3Q9Y2U8 911 aa16.71■□□□□ 0.27
VPS28-210ENST00000529182 RIPOR2Q9Y4F9 1068 aa16.71■□□□□ 0.27
VPS28-210ENST00000529182 MED23Q9ULK4 1368 aa16.7■□□□□ 0.26
VPS28-210ENST00000529182 KCNJ4P48050 445 aa16.7■□□□□ 0.26
VPS28-210ENST00000529182 SIL1Q9H173 461 aa16.7■□□□□ 0.26
VPS28-210ENST00000529182 PA2G4Q9UQ80 394 aaKnown RBP16.7■□□□□ 0.26
VPS28-210ENST00000529182 COG6Q9Y2V7 657 aa16.7■□□□□ 0.26
VPS28-210ENST00000529182 A0A1B0GUL6 1792 aa16.69■□□□□ 0.26
VPS28-210ENST00000529182 G3V3G9 751 aa16.69■□□□□ 0.26
VPS28-210ENST00000529182 MS4A1P11836 297 aa16.69■□□□□ 0.26
VPS28-210ENST00000529182 DCAF8Q5TAQ9 597 aa16.69■□□□□ 0.26
VPS28-210ENST00000529182 CIAPIN1Q6FI81 312 aa16.69■□□□□ 0.26
VPS28-210ENST00000529182 GPC2Q8N158 579 aa16.69■□□□□ 0.26
VPS28-210ENST00000529182 WDR90Q96KV7 1748 aa16.69■□□□□ 0.26
VPS28-210ENST00000529182 SRGAP3O43295 1099 aa16.68■□□□□ 0.26
VPS28-210ENST00000529182 MVPQ14764 893 aaKnown RBP16.68■□□□□ 0.26
VPS28-210ENST00000529182 L3MBTL3Q96JM7 780 aaPredicted RBP16.68■□□□□ 0.26
VPS28-210ENST00000529182 MROH5Q6ZUA9 1318 aa16.68■□□□□ 0.26
VPS28-210ENST00000529182 PNMA6EA0A0J9YXQ4 647 aa16.67■□□□□ 0.26
VPS28-210ENST00000529182 EYA2O00167 538 aa16.67■□□□□ 0.26
VPS28-210ENST00000529182 PSMD14O00487 310 aa16.67■□□□□ 0.26
VPS28-210ENST00000529182 VEGFAP15692 232 aaPredicted RBP16.67■□□□□ 0.26
VPS28-210ENST00000529182 MTX1Q13505 466 aa16.67■□□□□ 0.26
VPS28-210ENST00000529182 METTL24Q5JXM2 366 aa16.67■□□□□ 0.26
VPS28-210ENST00000529182 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.67■□□□□ 0.26
VPS28-210ENST00000529182 IRS2Q9Y4H2 1338 aa16.67■□□□□ 0.26
VPS28-210ENST00000529182 SCNN1DP51172 638 aa16.66■□□□□ 0.26
VPS28-210ENST00000529182 ATG9AQ7Z3C6 839 aa16.66■□□□□ 0.26
VPS28-210ENST00000529182 VGLL2Q8N8G2 317 aa16.66■□□□□ 0.26
VPS28-210ENST00000529182 GMPSP49915 693 aaPredicted RBP16.65■□□□□ 0.26
VPS28-210ENST00000529182 PDE3AQ14432 1141 aa16.65■□□□□ 0.26
VPS28-210ENST00000529182 TNIP1Q15025 636 aa16.65■□□□□ 0.26
VPS28-210ENST00000529182 C16orf71Q8IYS4 520 aaPredicted RBP16.65■□□□□ 0.26
VPS28-210ENST00000529182 COPRSQ9NQ92 184 aa16.65■□□□□ 0.26
VPS28-210ENST00000529182 DDX19BQ9UMR2 479 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms