RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 LTBP1Q14766 1721 aa19.08■□□□□ 0.65
LSM1-203ENST00000520755 SBF1O95248 1867 aa19.08■□□□□ 0.65
LSM1-203ENST00000520755 SRGAP3O43295 1099 aa19.08■□□□□ 0.64
LSM1-203ENST00000520755 MPHOSPH8Q99549 860 aa19.08■□□□□ 0.64
LSM1-203ENST00000520755 CHD4Q14839 1912 aa19.08■□□□□ 0.64
LSM1-203ENST00000520755 CC2D2BQ6DHV5 1058 aa19.07■□□□□ 0.64
LSM1-203ENST00000520755 ARAP2Q8WZ64 1704 aa19.07■□□□□ 0.64
LSM1-203ENST00000520755 IGHDP01880 384 aa19.06■□□□□ 0.64
LSM1-203ENST00000520755 RASSF7Q02833 373 aa19.06■□□□□ 0.64
LSM1-203ENST00000520755 HDAC1Q13547 482 aaPredicted RBP19.06■□□□□ 0.64
LSM1-203ENST00000520755 RTKN2Q8IZC4 609 aa19.06■□□□□ 0.64
LSM1-203ENST00000520755 KLHDC4Q8TBB5 520 aa19.06■□□□□ 0.64
LSM1-203ENST00000520755 BSDC1Q9NW68 430 aaPredicted RBP19.06■□□□□ 0.64
LSM1-203ENST00000520755 NFKBIEO00221 500 aa19.05■□□□□ 0.64
LSM1-203ENST00000520755 TAOK3Q9H2K8 898 aa19.05■□□□□ 0.64
LSM1-203ENST00000520755 PPP4R2Q9NY27 417 aa19.05■□□□□ 0.64
LSM1-203ENST00000520755 SNED1Q8TER0 1413 aa19.05■□□□□ 0.64
LSM1-203ENST00000520755 KDM2BQ8NHM5 1336 aa19.04■□□□□ 0.64
LSM1-203ENST00000520755 PTPN12Q05209 780 aaKnown RBP19.04■□□□□ 0.64
LSM1-203ENST00000520755 DPP8Q6V1X1 898 aaPredicted RBP19.04■□□□□ 0.64
LSM1-203ENST00000520755 LDHAL6AQ6ZMR3 332 aa19.04■□□□□ 0.64
LSM1-203ENST00000520755 MPNDQ8N594 471 aa19.04■□□□□ 0.64
LSM1-203ENST00000520755 CNNM1Q9NRU3 951 aa19.04■□□□□ 0.64
LSM1-203ENST00000520755 NSFL1CQ9UNZ2 370 aaKnown RBP19.04■□□□□ 0.64
LSM1-203ENST00000520755 PA2G4Q9UQ80 394 aaKnown RBP19.04■□□□□ 0.64
LSM1-203ENST00000520755 GPSM2P81274 684 aa19.03■□□□□ 0.64
LSM1-203ENST00000520755 FKBP4Q02790 459 aaKnown RBP eCLIP19.03■□□□□ 0.64
LSM1-203ENST00000520755 GRIPAP1Q4V328 841 aa19.03■□□□□ 0.64
LSM1-203ENST00000520755 B4GALNT3Q6L9W6 998 aa19.03■□□□□ 0.64
LSM1-203ENST00000520755 ANKIB1Q9P2G1 1089 aa19.03■□□□□ 0.64
LSM1-203ENST00000520755 MINPP1Q9UNW1 487 aa19.03■□□□□ 0.64
LSM1-203ENST00000520755 DICER1Q9UPY3 1922 aaKnown RBP19.03■□□□□ 0.64
LSM1-203ENST00000520755 DUOX1Q9NRD9 1551 aa19.02■□□□□ 0.64
LSM1-203ENST00000520755 PUS3Q9BZE2 481 aaKnown RBP19.02■□□□□ 0.64
LSM1-203ENST00000520755 COPRSQ9NQ92 184 aa19.02■□□□□ 0.64
LSM1-203ENST00000520755 TIAM2Q8IVF5 1701 aa19.01■□□□□ 0.63
LSM1-203ENST00000520755 HMMRO75330 724 aa19.01■□□□□ 0.63
LSM1-203ENST00000520755 CHRNDQ07001 517 aa19.01■□□□□ 0.63
LSM1-203ENST00000520755 PSMD1Q99460 953 aa19.01■□□□□ 0.63
LSM1-203ENST00000520755 SIL1Q9H173 461 aa19.01■□□□□ 0.63
LSM1-203ENST00000520755 ZNF277Q9NRM2 450 aaPredicted RBP19.01■□□□□ 0.63
LSM1-203ENST00000520755 LTBP3Q9NS15 1303 aa19■□□□□ 0.63
LSM1-203ENST00000520755 PRELPP51888 382 aa19■□□□□ 0.63
LSM1-203ENST00000520755 LRRC24Q50LG9 513 aa19■□□□□ 0.63
LSM1-203ENST00000520755 EXOC6BQ9Y2D4 811 aa19■□□□□ 0.63
LSM1-203ENST00000520755 XDHP47989 1333 aa19■□□□□ 0.63
LSM1-203ENST00000520755 C6orf229H3BNL8 230 aa18.99■□□□□ 0.63
LSM1-203ENST00000520755 UFL1O94874 794 aa18.99■□□□□ 0.63
LSM1-203ENST00000520755 LMNB1P20700 586 aa18.99■□□□□ 0.63
LSM1-203ENST00000520755 SUPT20HQ8NEM7 779 aa18.99■□□□□ 0.63
LSM1-203ENST00000520755 HELBQ8NG08 1087 aaPredicted RBP18.99■□□□□ 0.63
LSM1-203ENST00000520755 CCDC136Q96JN2 1154 aa18.99■□□□□ 0.63
LSM1-203ENST00000520755 ANKRD2Q9GZV1 360 aa18.99■□□□□ 0.63
LSM1-203ENST00000520755 RWDD1Q9H446 243 aaPredicted RBP18.99■□□□□ 0.63
LSM1-203ENST00000520755 DCTPP1Q9H773 170 aa18.99■□□□□ 0.63
LSM1-203ENST00000520755 GGA1Q9UJY5 639 aa18.99■□□□□ 0.63
LSM1-203ENST00000520755 NOP58Q9Y2X3 529 aaKnown RBP18.99■□□□□ 0.63
LSM1-203ENST00000520755 EYA2O00167 538 aa18.98■□□□□ 0.63
LSM1-203ENST00000520755 TAF5LO75529 589 aa18.98■□□□□ 0.63
LSM1-203ENST00000520755 C9orf131Q5VYM1 1079 aa18.98■□□□□ 0.63
LSM1-203ENST00000520755 ATG9AQ7Z3C6 839 aa18.98■□□□□ 0.63
LSM1-203ENST00000520755 SMC5Q8IY18 1101 aa18.98■□□□□ 0.63
LSM1-203ENST00000520755 TBC1D16Q8TBP0 767 aa18.98■□□□□ 0.63
LSM1-203ENST00000520755 GPR101Q96P66 508 aaPredicted RBP18.98■□□□□ 0.63
LSM1-203ENST00000520755 RTFDC1Q9BY42 306 aaPredicted RBP18.98■□□□□ 0.63
LSM1-203ENST00000520755 PODXL2Q9NZ53 605 aa18.98■□□□□ 0.63
LSM1-203ENST00000520755 RNF181Q9P0P0 153 aa18.98■□□□□ 0.63
LSM1-203ENST00000520755 POLLQ9UGP5 575 aa18.98■□□□□ 0.63
LSM1-203ENST00000520755 RIPOR2Q9Y4F9 1068 aa18.98■□□□□ 0.63
LSM1-203ENST00000520755 IARSP41252 1262 aaKnown RBP18.97■□□□□ 0.63
LSM1-203ENST00000520755 METTL24Q5JXM2 366 aa18.97■□□□□ 0.63
LSM1-203ENST00000520755 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.97■□□□□ 0.63
LSM1-203ENST00000520755 MROH5Q6ZUA9 1318 aa18.97■□□□□ 0.63
LSM1-203ENST00000520755 WTIPA6NIX2 430 aaPredicted RBP18.96■□□□□ 0.63
LSM1-203ENST00000520755 RIMBP2O15034 1052 aa18.96■□□□□ 0.63
LSM1-203ENST00000520755 PPIP5K2O43314 1243 aa18.96■□□□□ 0.63
LSM1-203ENST00000520755 SURF6O75683 361 aaKnown RBP18.96■□□□□ 0.63
LSM1-203ENST00000520755 ATP2B4P23634 1241 aa18.96■□□□□ 0.63
LSM1-203ENST00000520755 KCNJ4P48050 445 aa18.96■□□□□ 0.63
LSM1-203ENST00000520755 AOC3Q16853 763 aa18.96■□□□□ 0.63
LSM1-203ENST00000520755 MYH13Q9UKX3 1938 aa18.96■□□□□ 0.63
LSM1-203ENST00000520755 ZNF609O15014 1411 aa18.95■□□□□ 0.62
LSM1-203ENST00000520755 CIAO1O76071 339 aa18.95■□□□□ 0.62
LSM1-203ENST00000520755 SASH1O94885 1247 aa18.95■□□□□ 0.62
LSM1-203ENST00000520755 EYA3Q99504 573 aa18.95■□□□□ 0.62
LSM1-203ENST00000520755 FBXO3Q9UK99 471 aa18.95■□□□□ 0.62
LSM1-203ENST00000520755 ZNF804BA4D1E1 1349 aa18.95■□□□□ 0.62
LSM1-203ENST00000520755 COL4A5P29400 1685 aa18.95■□□□□ 0.62
LSM1-203ENST00000520755 SNAP23O00161 211 aa18.94■□□□□ 0.62
LSM1-203ENST00000520755 IL15P40933 162 aaPredicted RBP18.94■□□□□ 0.62
LSM1-203ENST00000520755 WASHC4Q2M389 1173 aa18.94■□□□□ 0.62
LSM1-203ENST00000520755 LARGE2Q8N3Y3 721 aa18.94■□□□□ 0.62
LSM1-203ENST00000520755 VGLL2Q8N8G2 317 aa18.94■□□□□ 0.62
LSM1-203ENST00000520755 LEMD3Q9Y2U8 911 aa18.94■□□□□ 0.62
LSM1-203ENST00000520755 KIAA2012Q0VF49 1180 aa18.93■□□□□ 0.62
LSM1-203ENST00000520755 G3BP1Q13283 466 aaKnown RBP eCLIP18.93■□□□□ 0.62
LSM1-203ENST00000520755 OS9Q13438 667 aaPredicted RBP18.93■□□□□ 0.62
LSM1-203ENST00000520755 CENPQQ7L2Z9 268 aaPredicted RBP18.93■□□□□ 0.62
LSM1-203ENST00000520755 GCC1Q96CN9 775 aa18.93■□□□□ 0.62
LSM1-203ENST00000520755 ZC3H12CQ9C0D7 883 aaKnown RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms