RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PHKG2P15735 406 aa11.31□□□□□ -0.6
VCAN-210ENST00000513960 FSD1Q9BTV5 496 aa11.31□□□□□ -0.6
VCAN-210ENST00000513960 CALCOCO1Q9P1Z2 691 aa11.31□□□□□ -0.6
VCAN-210ENST00000513960 DDX41Q9UJV9 622 aaKnown RBP11.31□□□□□ -0.6
VCAN-210ENST00000513960 PHRF1Q9P1Y6 1649 aaKnown RBP11.31□□□□□ -0.6
VCAN-210ENST00000513960 ZNF142P52746 1687 aaPredicted RBP11.3□□□□□ -0.6
VCAN-210ENST00000513960 CCDC73Q6ZRK6 1079 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 EAF2Q96CJ1 260 aaPredicted RBP11.3□□□□□ -0.6
VCAN-210ENST00000513960 BOLA2Q9H3K6 86 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 SNRPA1P09661 255 aaKnown RBP11.3□□□□□ -0.6
VCAN-210ENST00000513960 PDCP20941 246 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 ANKRD13DQ6ZTN6 518 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 ZNF496Q96IT1 587 aaPredicted RBP11.3□□□□□ -0.6
VCAN-210ENST00000513960 SASH1O94885 1247 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 PTH1RQ03431 593 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 PDIA6Q15084 440 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 TERF2Q15554 542 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 CCDC144BQ3MJ40 725 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 TEX35Q5T0J7 233 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 BLOC1S2Q6QNY1 142 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 CERS3Q8IU89 383 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 CCDC144CPQ8IYA2 1237 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 DDX17Q92841 729 aaKnown RBP11.3□□□□□ -0.6
VCAN-210ENST00000513960 ZSCAN31Q96LW9 406 aaPredicted RBP11.3□□□□□ -0.6
VCAN-210ENST00000513960 TTC14Q96N46 770 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 SDF4Q9BRK5 362 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 TMEM51Q9NW97 253 aa11.3□□□□□ -0.6
VCAN-210ENST00000513960 TUBGCP6Q96RT7 1819 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 NEURL1BA8MQ27 555 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 IGKV5-2P06315 115 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 ME3Q16798 604 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 KMT5BQ4FZB7 885 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 FBXO38Q6PIJ6 1188 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 CABLES1Q8TDN4 633 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 METTL22Q9BUU2 404 aaPredicted RBP11.29□□□□□ -0.6
VCAN-210ENST00000513960 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.29□□□□□ -0.62e-7■■■■■ 28.3
VCAN-210ENST00000513960 CTIFO43310 598 aaKnown RBP11.29□□□□□ -0.6
VCAN-210ENST00000513960 KINO60870 393 aaKnown RBP11.29□□□□□ -0.6
VCAN-210ENST00000513960 NR1I2O75469 434 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 GUCY1B3Q02153 619 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 GCKRQ14397 625 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 CHRNA2Q15822 529 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 SCAND2PQ9GZW5 306 aaPredicted RBP11.29□□□□□ -0.6
VCAN-210ENST00000513960 DDX19AQ9NUU7 478 aaKnown RBP11.29□□□□□ -0.6
VCAN-210ENST00000513960 UTYO14607 1347 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 SLU7O95391 586 aaKnown RBP11.29□□□□□ -0.6
VCAN-210ENST00000513960 CABP4P57796 275 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 IRX5P78411 483 aaPredicted RBP11.29□□□□□ -0.6
VCAN-210ENST00000513960 SF3A1Q15459 793 aaKnown RBP11.29□□□□□ -0.6
VCAN-210ENST00000513960 ERCC6LQ2NKX8 1250 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 RNF20Q5VTR2 975 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 CCDC171Q6TFL3 1326 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 TMEM87AQ8NBN3 555 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 KAZALD1Q96I82 304 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 DCAF5Q96JK2 942 aa11.29□□□□□ -0.6
VCAN-210ENST00000513960 SNW1Q13573 536 aaKnown RBP11.28□□□□□ -0.6
VCAN-210ENST00000513960 SYT10Q6XYQ8 523 aa11.28□□□□□ -0.6
VCAN-210ENST00000513960 KLHDC4Q8TBB5 520 aa11.28□□□□□ -0.6
VCAN-210ENST00000513960 RBM8AQ9Y5S9 174 aaKnown RBP11.28□□□□□ -0.6
VCAN-210ENST00000513960 PSMA5P28066 241 aa11.28□□□□□ -0.6
VCAN-210ENST00000513960 NMIQ13287 307 aaPredicted RBP11.28□□□□□ -0.6
VCAN-210ENST00000513960 VPS53Q5VIR6 699 aa11.28□□□□□ -0.6
VCAN-210ENST00000513960 SH2B1Q9NRF2 756 aaPredicted RBP11.28□□□□□ -0.6
VCAN-210ENST00000513960 SLFN14P0C7P3 912 aa11.28□□□□□ -0.6
VCAN-210ENST00000513960 PIP4K2AP48426 406 aaPredicted RBP11.28□□□□□ -0.6
VCAN-210ENST00000513960 FAM227BQ96M60 508 aa11.28□□□□□ -0.6
VCAN-210ENST00000513960 LRRC2Q9BYS8 371 aa11.28□□□□□ -0.6
VCAN-210ENST00000513960 TM6SF1Q9BZW5 370 aa11.28□□□□□ -0.6
VCAN-210ENST00000513960 BIN1O00499 593 aa11.27□□□□□ -0.6
VCAN-210ENST00000513960 ME1P48163 572 aa11.27□□□□□ -0.6
VCAN-210ENST00000513960 UBXN4Q92575 508 aa11.27□□□□□ -0.6
VCAN-210ENST00000513960 ARGLU1Q9NWB6 273 aaPredicted RBP11.27□□□□□ -0.6
VCAN-210ENST00000513960 ARHGAP29Q52LW3 1261 aa11.27□□□□□ -0.61
VCAN-210ENST00000513960 ISM2Q6H9L7 571 aa11.27□□□□□ -0.61
VCAN-210ENST00000513960 NEK11Q8NG66 645 aa11.27□□□□□ -0.61
VCAN-210ENST00000513960 URI1O94763 535 aaPredicted RBP11.27□□□□□ -0.61
VCAN-210ENST00000513960 SKIDA1Q1XH10 827 aa11.27□□□□□ -0.61
VCAN-210ENST00000513960 UBE3BQ7Z3V4 1068 aa11.27□□□□□ -0.61
VCAN-210ENST00000513960 TMC6Q7Z403 805 aa11.27□□□□□ -0.61
VCAN-210ENST00000513960 AOPEPQ8N6M6 819 aa11.27□□□□□ -0.61
VCAN-210ENST00000513960 BMS1Q14692 1282 aaKnown RBP11.26□□□□□ -0.61
VCAN-210ENST00000513960 CREB3L3Q68CJ9 461 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 TMCO3Q6UWJ1 677 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 FUCA2Q9BTY2 467 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 ZSWIM6Q9HCJ5 1215 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 TLR7Q9NYK1 1049 aaKnown RBP11.26□□□□□ -0.61
VCAN-210ENST00000513960 CADPS2Q86UW7 1296 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 TPCN1Q9ULQ1 816 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 A0A087WZG4 1122 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 NECTIN1Q15223 517 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 LEO1Q8WVC0 666 aaPredicted RBP11.26□□□□□ -0.61
VCAN-210ENST00000513960 ERO1AQ96HE7 468 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 TMEM94Q12767 1356 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 KDM6AO15550 1401 aaPredicted RBP11.26□□□□□ -0.61
VCAN-210ENST00000513960 ATP5J2-PTCD1G3V325 749 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 PTCD1O75127 700 aaKnown RBP11.26□□□□□ -0.61
VCAN-210ENST00000513960 LRRC8AQ8IWT6 810 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 CCDC34Q96HJ3 373 aa11.26□□□□□ -0.61
VCAN-210ENST00000513960 JAK2O60674 1132 aa11.25□□□□□ -0.61
VCAN-210ENST00000513960 EPHA10Q5JZY3 1008 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms