RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PAXIP1Q6ZW49 1069 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-217ENST00000512946 GOLGA8AA7E2F4 631 aa12.69□□□□□ -0.38
LIMCH1-217ENST00000512946 GOLGA8BA8MQT2 603 aa12.69□□□□□ -0.38
LIMCH1-217ENST00000512946 RNF40O75150 1001 aa12.69□□□□□ -0.38
LIMCH1-217ENST00000512946 VWA3BQ502W6 1294 aa12.69□□□□□ -0.38
LIMCH1-217ENST00000512946 SYT10Q6XYQ8 523 aa12.69□□□□□ -0.38
LIMCH1-217ENST00000512946 GPRASP1Q5JY77 1395 aa12.69□□□□□ -0.38
LIMCH1-217ENST00000512946 KRT13P13646 458 aa12.69□□□□□ -0.38
LIMCH1-217ENST00000512946 PSME1Q06323 249 aa12.69□□□□□ -0.38
LIMCH1-217ENST00000512946 ZKSCAN8Q15776 578 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-217ENST00000512946 MSANTD4Q8NCY6 345 aa12.69□□□□□ -0.38
LIMCH1-217ENST00000512946 APBA1Q02410 837 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 FKBP4Q02790 459 aaKnown RBP eCLIP12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 GIMAP6Q6P9H5 292 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 PNMA8AQ86V59 439 aaPredicted RBP12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 TMEM57Q8N5G2 664 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 GTF3C6Q969F1 213 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 NAPGQ99747 312 aaPredicted RBP12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 NCAPGQ9BPX3 1015 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 TMX1Q9H3N1 280 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 PHACTR2O75167 634 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 TYRO3Q06418 890 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 PAK2Q13177 524 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 SLC4A8Q2Y0W8 1093 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 ZNF569Q5MCW4 686 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 CATIPQ7Z7H3 387 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 ERMNQ8TAM6 284 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 INTS4Q96HW7 963 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 SIL1Q9H173 461 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 BIN1O00499 593 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 ATP2B2Q01814 1243 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 LRRC23Q53EV4 343 aaPredicted RBP12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 SMC5Q8IY18 1101 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 UBA5Q9GZZ9 404 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 SATB2Q9UPW6 733 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 CUX1P39880 1505 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 ZNF213O14771 459 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 EVI5O60447 810 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 RUFY3Q7L099 469 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 TMTC2Q8N394 836 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 WHAMMQ8TF30 809 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 NAPBQ9H115 298 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 RBM27Q9P2N5 1060 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 ELP1O95163 1332 aa12.68□□□□□ -0.38
LIMCH1-217ENST00000512946 CHMP4BP1P59074 171 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 IQCDQ96DY2 449 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 ZNF692Q9BU19 519 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 GGNBP2Q9H3C7 697 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 LRPPRCP42704 1394 aaKnown RBP12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 GOLGA6BA6NDN3 693 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 PDE1CQ14123 709 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 ARHGEF2Q92974 986 aaKnown RBP12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 ORC3Q9UBD5 711 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 TLDC2A0PJX2 215 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 ZNF131P52739 623 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 LGSNQ5TDP6 509 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 SMARCC2Q8TAQ2 1214 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 MED4Q9NPJ6 270 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 ODF2LQ9ULJ1 636 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 SNX16P57768 344 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 PPP2R5EQ16537 467 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 MUM1Q2TAK8 710 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 NUTM2DQ5VT03 806 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 WDR78Q5VTH9 848 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 RRAGBQ5VZM2 374 aa12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 NUTM2AQ8IVF1 878 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 RNF216Q9NWF9 866 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 NKTRP30414 1462 aaKnown RBP12.67□□□□□ -0.38
LIMCH1-217ENST00000512946 BICDL1Q6ZP65 573 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 ZC4H2Q9NQZ6 224 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 IDEP14735 1019 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 ERCC3P19447 782 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 U2AF2P26368 475 aaKnown RBP eCLIP12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 RAB3GAP1Q15042 981 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 INF2Q27J81 1249 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 PDCD7Q8N8D1 485 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 LRP2BPQ9P2M1 347 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 BAIAP2L1Q9UHR4 511 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 FAM169AQ9Y6X4 670 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 C8orf74Q6P047 294 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 GSTA5Q7RTV2 222 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 CCDC65Q8IXS2 484 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 EFCAB13Q8IY85 973 aa12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 TFIP11Q9UBB9 837 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-217ENST00000512946 TTC36A6NLP5 189 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 TBCAO75347 108 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 RHOXF2BP0C7M4 288 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 MAP3K12Q12852 859 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 SEL1L2Q5TEA6 688 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 RASIP1Q5U651 963 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 AOPEPQ8N6M6 819 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 RHOXF2Q9BQY4 288 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 UBLCP1Q8WVY7 318 aaPredicted RBP12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 BAG1Q99933 345 aaPredicted RBP12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 USP16Q9Y5T5 823 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 TTF1Q15361 905 aaPredicted RBP12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 ANKRD20A3Q5VUR7 823 aa12.65□□□□□ -0.38
LIMCH1-217ENST00000512946 IFT81Q8WYA0 676 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms