RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	TBC1D8	O95759	1140 aa		12.05	□□□□□ -0.48
UBE2D3-223	ENST00000508249	NFE2L2	Q16236	605 aa		12.05	□□□□□ -0.48
UBE2D3-223	ENST00000508249	NOM1	Q5C9Z4	860 aa	Known RBP	12.05	□□□□□ -0.48
UBE2D3-223	ENST00000508249	FBXO46	Q6PJ61	603 aa	Predicted RBP	12.05	□□□□□ -0.48
UBE2D3-223	ENST00000508249	MOB2	Q70IA6	237 aa		12.05	□□□□□ -0.48
UBE2D3-223	ENST00000508249	GCC1	Q96CN9	775 aa		12.05	□□□□□ -0.48
UBE2D3-223	ENST00000508249	UTP14A	Q9BVJ6	771 aa	Known RBP	12.05	□□□□□ -0.48
UBE2D3-223	ENST00000508249	POLL	Q9UGP5	575 aa		12.05	□□□□□ -0.48
UBE2D3-223	ENST00000508249	LAMA3	Q16787	3333 aa		12.05	□□□□□ -0.48
UBE2D3-223	ENST00000508249	POTEF	A5A3E0	1075 aa		12.04	□□□□□ -0.48
UBE2D3-223	ENST00000508249	ECE2	O60344	883 aa		12.04	□□□□□ -0.48
UBE2D3-223	ENST00000508249	RPS12	P25398	132 aa	Known RBP	12.04	□□□□□ -0.48
UBE2D3-223	ENST00000508249	NLRP10	Q86W26	655 aa		12.04	□□□□□ -0.48
UBE2D3-223	ENST00000508249	PNISR	Q8TF01	805 aa	Known RBP	12.04	□□□□□ -0.48
UBE2D3-223	ENST00000508249	DCPS	Q96C86	337 aa	Known RBP	12.04	□□□□□ -0.48
UBE2D3-223	ENST00000508249	SPEF2	Q9C093	1822 aa		12.03	□□□□□ -0.48
UBE2D3-223	ENST00000508249	GPR25	O00155	361 aa		12.03	□□□□□ -0.48
UBE2D3-223	ENST00000508249	ANXA1	P04083	346 aa		12.03	□□□□□ -0.48
UBE2D3-223	ENST00000508249	ZNF280A	P59817	542 aa	Predicted RBP	12.03	□□□□□ -0.48
UBE2D3-223	ENST00000508249	RBM26	Q5T8P6	1007 aa	Known RBP	12.03	□□□□□ -0.48
UBE2D3-223	ENST00000508249	CELF1	Q92879	486 aa	Known RBP	12.03	□□□□□ -0.48
UBE2D3-223	ENST00000508249	RUNDC1	Q96C34	613 aa		12.03	□□□□□ -0.48
UBE2D3-223	ENST00000508249	CFHR5	Q9BXR6	569 aa		12.03	□□□□□ -0.48
UBE2D3-223	ENST00000508249	TRIOBP	Q9H2D6	2365 aa		12.03	□□□□□ -0.48
UBE2D3-223	ENST00000508249	OTOF	Q9HC10	1997 aa		12.02	□□□□□ -0.49
UBE2D3-223	ENST00000508249	VIL1	P09327	827 aa	Known RBP	12.02	□□□□□ -0.49
UBE2D3-223	ENST00000508249	GPSM2	P81274	684 aa		12.02	□□□□□ -0.49
UBE2D3-223	ENST00000508249	WASHC4	Q2M389	1173 aa		12.02	□□□□□ -0.49
UBE2D3-223	ENST00000508249	ANGEL2	Q5VTE6	544 aa	Known RBP	12.02	□□□□□ -0.49
UBE2D3-223	ENST00000508249	REM2	Q8IYK8	340 aa	Predicted RBP	12.02	□□□□□ -0.49
UBE2D3-223	ENST00000508249	GML	Q99445	158 aa		12.02	□□□□□ -0.49
UBE2D3-223	ENST00000508249	SCAF8	Q9UPN6	1271 aa	Known RBP	12.02	□□□□□ -0.49
UBE2D3-223	ENST00000508249	CEP290	O15078	2479 aa		12.02	□□□□□ -0.49
UBE2D3-223	ENST00000508249	RIMBP2	O15034	1052 aa		12.01	□□□□□ -0.49
UBE2D3-223	ENST00000508249	TM4SF4	P48230	202 aa		12.01	□□□□□ -0.49
UBE2D3-223	ENST00000508249	FKBP1B	P68106	108 aa		12.01	□□□□□ -0.49
UBE2D3-223	ENST00000508249	CAP1	Q01518	475 aa		12.01	□□□□□ -0.49
UBE2D3-223	ENST00000508249	DOK7	Q18PE1	504 aa		12.01	□□□□□ -0.49
UBE2D3-223	ENST00000508249	DDX46	Q7L014	1031 aa	Known RBP	12.01	□□□□□ -0.49
UBE2D3-223	ENST00000508249	SULF1	Q8IWU6	871 aa		12.01	□□□□□ -0.49
UBE2D3-223	ENST00000508249	TMX4	Q9H1E5	349 aa	Predicted RBP	12.01	□□□□□ -0.49
UBE2D3-223	ENST00000508249	BABAM1	Q9NWV8	329 aa		12.01	□□□□□ -0.49
UBE2D3-223	ENST00000508249	ECM29	Q5VYK3	1845 aa		12.01	□□□□□ -0.49
UBE2D3-223	ENST00000508249	ZSWIM8	A7E2V4	1837 aa		12	□□□□□ -0.49
UBE2D3-223	ENST00000508249	TMC4	Q7Z404	712 aa		12	□□□□□ -0.49
UBE2D3-223	ENST00000508249	TBC1D16	Q8TBP0	767 aa		12	□□□□□ -0.49
UBE2D3-223	ENST00000508249	ZNF428	Q96B54	188 aa		12	□□□□□ -0.49
UBE2D3-223	ENST00000508249	HDAC9	Q9UKV0	1011 aa		12	□□□□□ -0.49
UBE2D3-223	ENST00000508249	SH3TC1	Q8TE82	1336 aa		12	□□□□□ -0.49
UBE2D3-223	ENST00000508249	PITPNM2	Q9BZ72	1349 aa		12	□□□□□ -0.49
UBE2D3-223	ENST00000508249	SSC5D	A1L4H1	1573 aa		12	□□□□□ -0.49
UBE2D3-223	ENST00000508249	TMPO	P42166	694 aa	Known RBP	11.99	□□□□□ -0.49
UBE2D3-223	ENST00000508249	SCARF1	Q14162	830 aa		11.99	□□□□□ -0.49
UBE2D3-223	ENST00000508249	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.99	□□□□□ -0.49
UBE2D3-223	ENST00000508249	UBE2Q2L	H0YL09	131 aa		11.98	□□□□□ -0.49
UBE2D3-223	ENST00000508249	RIPK4	P57078	832 aa		11.98	□□□□□ -0.49
UBE2D3-223	ENST00000508249	SF3B3	Q15393	1217 aa	Known RBP	11.98	□□□□□ -0.49
UBE2D3-223	ENST00000508249	NCBP3	Q53F19	620 aa	Known RBP	11.98	□□□□□ -0.49
UBE2D3-223	ENST00000508249	PRAMEF18	Q5VWM3	479 aa		11.98	□□□□□ -0.49
UBE2D3-223	ENST00000508249	ADAMTS8	Q9UP79	889 aa		11.98	□□□□□ -0.49
UBE2D3-223	ENST00000508249	UNC80	Q8N2C7	3258 aa		11.97	□□□□□ -0.49
UBE2D3-223	ENST00000508249	CALD1	Q05682	793 aa	Known RBP	11.97	□□□□□ -0.49
UBE2D3-223	ENST00000508249	TCIRG1	Q13488	830 aa		11.97	□□□□□ -0.49
UBE2D3-223	ENST00000508249	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.97	□□□□□ -0.49
UBE2D3-223	ENST00000508249	OTOP1	Q7RTM1	612 aa		11.97	□□□□□ -0.49
UBE2D3-223	ENST00000508249	MRS2	Q9HD23	443 aa		11.97	□□□□□ -0.49
UBE2D3-223	ENST00000508249	PODXL2	Q9NZ53	605 aa		11.97	□□□□□ -0.49
UBE2D3-223	ENST00000508249	TRMT112	Q9UI30	125 aa	Known RBP	11.97	□□□□□ -0.49
UBE2D3-223	ENST00000508249		A0A1B0GUL6	1792 aa		11.97	□□□□□ -0.49
UBE2D3-223	ENST00000508249	C6orf229	H3BNL8	230 aa		11.96	□□□□□ -0.49
UBE2D3-223	ENST00000508249	FKTN	O75072	461 aa		11.96	□□□□□ -0.49
UBE2D3-223	ENST00000508249	MKRN3	Q13064	507 aa	Known RBP	11.96	□□□□□ -0.49
UBE2D3-223	ENST00000508249	COPS6	Q7L5N1	327 aa		11.96	□□□□□ -0.49
UBE2D3-223	ENST00000508249	AGBL3	Q8NEM8	1001 aa		11.96	□□□□□ -0.49
UBE2D3-223	ENST00000508249	XAGE3	Q8WTP9	111 aa		11.96	□□□□□ -0.49
UBE2D3-223	ENST00000508249	MYOZ2	Q9NPC6	264 aa		11.96	□□□□□ -0.49
UBE2D3-223	ENST00000508249	COLQ	Q9Y215	455 aa	Predicted RBP	11.96	□□□□□ -0.49
UBE2D3-223	ENST00000508249	MYH3	P11055	1940 aa		11.96	□□□□□ -0.5
UBE2D3-223	ENST00000508249	NBPF9	Q3BBW0	867 aa		11.95	□□□□□ -0.5
UBE2D3-223	ENST00000508249	ISCA1	Q9BUE6	129 aa		11.95	□□□□□ -0.5
UBE2D3-223	ENST00000508249	EN2	P19622	333 aa	Predicted RBP	11.94	□□□□□ -0.5
UBE2D3-223	ENST00000508249	EIF2S2	P20042	333 aa	Known RBP	11.94	□□□□□ -0.5
UBE2D3-223	ENST00000508249	PTPN12	Q05209	780 aa	Known RBP	11.94	□□□□□ -0.5
UBE2D3-223	ENST00000508249	HSP90AB3P	Q58FF7	597 aa		11.94	□□□□□ -0.5
UBE2D3-223	ENST00000508249	CCDC146	Q8IYE0	955 aa		11.94	□□□□□ -0.5
UBE2D3-223	ENST00000508249	ARMC5	Q96C12	935 aa		11.94	□□□□□ -0.5
UBE2D3-223	ENST00000508249	FAM89A	Q96GI7	184 aa		11.94	□□□□□ -0.5
UBE2D3-223	ENST00000508249	EYA3	Q99504	573 aa		11.94	□□□□□ -0.5
UBE2D3-223	ENST00000508249	WTIP	A6NIX2	430 aa	Predicted RBP	11.93	□□□□□ -0.5
UBE2D3-223	ENST00000508249	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
UBE2D3-223	ENST00000508249	AIMP1	Q12904	312 aa	Known RBP	11.93	□□□□□ -0.5
UBE2D3-223	ENST00000508249	KRT24	Q2M2I5	525 aa		11.93	□□□□□ -0.5
UBE2D3-223	ENST00000508249	LDLRAD1	Q5T700	205 aa		11.93	□□□□□ -0.5
UBE2D3-223	ENST00000508249	SPRYD7	Q5W111	196 aa		11.93	□□□□□ -0.5
UBE2D3-223	ENST00000508249	OTUD5	Q96G74	571 aa		11.93	□□□□□ -0.5
UBE2D3-223	ENST00000508249	SEC31B	Q9NQW1	1179 aa		11.93	□□□□□ -0.5
UBE2D3-223	ENST00000508249	TSPYL4	Q9UJ04	414 aa		11.93	□□□□□ -0.5
UBE2D3-223	ENST00000508249	FZD1	Q9UP38	647 aa		11.93	□□□□□ -0.5
UBE2D3-223	ENST00000508249	TRIM17	Q9Y577	477 aa		11.93	□□□□□ -0.5
UBE2D3-223	ENST00000508249	CUL9	Q8IWT3	2517 aa		11.92	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms