RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 MPNDQ8N594 471 aa10.53□□□□□ -0.72
PDGFC-205ENST00000506880 ANKRD44Q8N8A2 993 aa10.53□□□□□ -0.72
PDGFC-205ENST00000506880 SSH3Q8TE77 659 aa10.53□□□□□ -0.72
PDGFC-205ENST00000506880 CLUAP1Q96AJ1 413 aa10.53□□□□□ -0.72
PDGFC-205ENST00000506880 MEIS3Q99687 375 aa10.53□□□□□ -0.72
PDGFC-205ENST00000506880 A0A1B0GUL6 1792 aa10.52□□□□□ -0.72
PDGFC-205ENST00000506880 ZNF609O15014 1411 aa10.52□□□□□ -0.73
PDGFC-205ENST00000506880 RLBP1P12271 317 aa10.52□□□□□ -0.73
PDGFC-205ENST00000506880 IL15P40933 162 aaPredicted RBP10.52□□□□□ -0.73
PDGFC-205ENST00000506880 UBE4AQ14139 1066 aa10.52□□□□□ -0.73
PDGFC-205ENST00000506880 POLA2Q14181 598 aa10.52□□□□□ -0.73
PDGFC-205ENST00000506880 FAM161AQ3B820 660 aa10.52□□□□□ -0.73
PDGFC-205ENST00000506880 DPP8Q6V1X1 898 aaPredicted RBP10.52□□□□□ -0.73
PDGFC-205ENST00000506880 LDHAL6AQ6ZMR3 332 aa10.52□□□□□ -0.73
PDGFC-205ENST00000506880 SYNE4Q8N205 404 aa10.52□□□□□ -0.73
PDGFC-205ENST00000506880 GPR108Q9NPR9 543 aa10.52□□□□□ -0.73
PDGFC-205ENST00000506880 NOP58Q9Y2X3 529 aaKnown RBP10.52□□□□□ -0.73
PDGFC-205ENST00000506880 LRRFIP2Q9Y608 721 aaKnown RBP10.52□□□□□ -0.73
PDGFC-205ENST00000506880 MED23Q9ULK4 1368 aa10.52□□□□□ -0.73
PDGFC-205ENST00000506880 PSME4Q14997 1843 aa10.51□□□□□ -0.73
PDGFC-205ENST00000506880 TAF1P21675 1872 aa10.51□□□□□ -0.73
PDGFC-205ENST00000506880 EYA2O00167 538 aa10.51□□□□□ -0.73
PDGFC-205ENST00000506880 YBX3P16989 372 aaKnown RBP eCLIP10.51□□□□□ -0.73
PDGFC-205ENST00000506880 C3orf67Q6ZVT6 689 aa10.51□□□□□ -0.73
PDGFC-205ENST00000506880 CELF1Q92879 486 aaKnown RBP10.51□□□□□ -0.73
PDGFC-205ENST00000506880 GGA1Q9UJY5 639 aa10.51□□□□□ -0.73
PDGFC-205ENST00000506880 MINPP1Q9UNW1 487 aa10.51□□□□□ -0.73
PDGFC-205ENST00000506880 AKAP2Q9Y2D5 859 aa10.51□□□□□ -0.73
PDGFC-205ENST00000506880 SPEF2Q9C093 1822 aa10.51□□□□□ -0.73
PDGFC-205ENST00000506880 SRGAP3O43295 1099 aa10.5□□□□□ -0.73
PDGFC-205ENST00000506880 C21orf2O43822 256 aa10.5□□□□□ -0.73
PDGFC-205ENST00000506880 RAB11FIP3O75154 756 aa10.5□□□□□ -0.73
PDGFC-205ENST00000506880 RFX5P48382 616 aaPredicted RBP10.5□□□□□ -0.73
PDGFC-205ENST00000506880 PTPN12Q05209 780 aaKnown RBP10.5□□□□□ -0.73
PDGFC-205ENST00000506880 KIAA2012Q0VF49 1180 aa10.5□□□□□ -0.73
PDGFC-205ENST00000506880 RTL5Q5HYW3 569 aaPredicted RBP10.5□□□□□ -0.73
PDGFC-205ENST00000506880 TMED8Q6PL24 325 aaPredicted RBP10.5□□□□□ -0.73
PDGFC-205ENST00000506880 PANK1Q8TE04 598 aa10.5□□□□□ -0.73
PDGFC-205ENST00000506880 JDP2Q8WYK2 163 aa10.5□□□□□ -0.73
PDGFC-205ENST00000506880 CNNM1Q9NRU3 951 aa10.5□□□□□ -0.73
PDGFC-205ENST00000506880 CHMP3Q9Y3E7 222 aa10.5□□□□□ -0.73
PDGFC-205ENST00000506880 RIPOR2Q9Y4F9 1068 aa10.5□□□□□ -0.73
PDGFC-205ENST00000506880 DUOX1Q9NRD9 1551 aa10.49□□□□□ -0.73
PDGFC-205ENST00000506880 IARSP41252 1262 aaKnown RBP10.49□□□□□ -0.73
PDGFC-205ENST00000506880 EPHA10Q5JZY3 1008 aa10.49□□□□□ -0.73
PDGFC-205ENST00000506880 CEP85Q6P2H3 762 aa10.49□□□□□ -0.73
PDGFC-205ENST00000506880 ARHGAP27Q6ZUM4 889 aa10.49□□□□□ -0.73
PDGFC-205ENST00000506880 PODNQ7Z5L7 613 aa10.49□□□□□ -0.73
PDGFC-205ENST00000506880 CCDC24Q8N4L8 307 aa10.49□□□□□ -0.73
PDGFC-205ENST00000506880 SEC31BQ9NQW1 1179 aa10.49□□□□□ -0.73
PDGFC-205ENST00000506880 ANKIB1Q9P2G1 1089 aa10.49□□□□□ -0.73
PDGFC-205ENST00000506880 COG6Q9Y2V7 657 aa10.49□□□□□ -0.73
PDGFC-205ENST00000506880 U3KPZ7 1027 aaPredicted RBP10.49□□□□□ -0.73
PDGFC-205ENST00000506880 ARAP2Q8WZ64 1704 aa10.48□□□□□ -0.73
PDGFC-205ENST00000506880 NFKBIEO00221 500 aa10.48□□□□□ -0.73
PDGFC-205ENST00000506880 PDE8BO95263 885 aa10.48□□□□□ -0.73
PDGFC-205ENST00000506880 G3BP1Q13283 466 aaKnown RBP eCLIP10.48□□□□□ -0.73
PDGFC-205ENST00000506880 PUM3Q15397 648 aaKnown RBP10.48□□□□□ -0.73
PDGFC-205ENST00000506880 WASHC4Q2M389 1173 aa10.48□□□□□ -0.73
PDGFC-205ENST00000506880 ZC3H12CQ9C0D7 883 aaKnown RBP10.48□□□□□ -0.73
PDGFC-205ENST00000506880 COA1Q9GZY4 146 aa10.48□□□□□ -0.73
PDGFC-205ENST00000506880 CEP126Q9P2H0 1117 aa10.48□□□□□ -0.73
PDGFC-205ENST00000506880 SCN4AP35499 1836 aa10.48□□□□□ -0.73
PDGFC-205ENST00000506880 PDS5AQ29RF7 1337 aaKnown RBP10.48□□□□□ -0.73
PDGFC-205ENST00000506880 UTRNP46939 3433 aa10.48□□□□□ -0.73
PDGFC-205ENST00000506880 TIAM2Q8IVF5 1701 aa10.47□□□□□ -0.73
PDGFC-205ENST00000506880 SEMA3EO15041 775 aa10.47□□□□□ -0.73
PDGFC-205ENST00000506880 IFIT1P09914 478 aaKnown RBP10.47□□□□□ -0.73
PDGFC-205ENST00000506880 FKBP1AP62942 108 aaKnown RBP10.47□□□□□ -0.73
PDGFC-205ENST00000506880 CHRNDQ07001 517 aa10.47□□□□□ -0.73
PDGFC-205ENST00000506880 HDAC1Q13547 482 aaPredicted RBP10.47□□□□□ -0.73
PDGFC-205ENST00000506880 DPY19L2Q6NUT2 758 aa10.47□□□□□ -0.73
PDGFC-205ENST00000506880 VGLL2Q8N8G2 317 aa10.47□□□□□ -0.73
PDGFC-205ENST00000506880 TBC1D16Q8TBP0 767 aa10.47□□□□□ -0.73
PDGFC-205ENST00000506880 LPIN2Q92539 896 aa10.47□□□□□ -0.73
PDGFC-205ENST00000506880 NSFL1CQ9UNZ2 370 aaKnown RBP10.47□□□□□ -0.73
PDGFC-205ENST00000506880 ZNF804BA4D1E1 1349 aa10.47□□□□□ -0.73
PDGFC-205ENST00000506880 MYO3BQ8WXR4 1341 aa10.47□□□□□ -0.73
PDGFC-205ENST00000506880 FZD9O00144 591 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 PLIN1O60240 522 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 RPS12P25398 132 aaKnown RBP10.46□□□□□ -0.73
PDGFC-205ENST00000506880 KCNJ4P48050 445 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 TNIP1Q15025 636 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 CAVIN4Q5BKX8 364 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 ZNF804AQ7Z570 1209 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 TICAM2Q86XR7 235 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 NIM1KQ8IY84 436 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 GCC1Q96CN9 775 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 KIF1BPQ96EK5 621 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 ZNRF3Q9ULT6 936 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 SUGT1Q9Y2Z0 365 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 KDM2BQ8NHM5 1336 aa10.46□□□□□ -0.73
PDGFC-205ENST00000506880 MYH13Q9UKX3 1938 aa10.45□□□□□ -0.74
PDGFC-205ENST00000506880 PPIP5K2O43314 1243 aa10.45□□□□□ -0.74
PDGFC-205ENST00000506880 UFL1O94874 794 aa10.45□□□□□ -0.74
PDGFC-205ENST00000506880 SLC5A1P13866 664 aa10.45□□□□□ -0.74
PDGFC-205ENST00000506880 FGFR2P21802 821 aa10.45□□□□□ -0.74
PDGFC-205ENST00000506880 EIF6P56537 245 aaKnown RBP10.45□□□□□ -0.74
PDGFC-205ENST00000506880 GPSM2P81274 684 aa10.45□□□□□ -0.74
PDGFC-205ENST00000506880 METTL24Q5JXM2 366 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms