RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 MTX1Q13505 466 aa13.56□□□□□ -0.24
VPS13D-210ENST00000489961 SLC51AQ86UW1 340 aa13.56□□□□□ -0.24
VPS13D-210ENST00000489961 ANKRD2Q9GZV1 360 aa13.56□□□□□ -0.24
VPS13D-210ENST00000489961 C1orf115Q9H7X2 142 aa13.56□□□□□ -0.24
VPS13D-210ENST00000489961 ANKIB1Q9P2G1 1089 aa13.56□□□□□ -0.24
VPS13D-210ENST00000489961 XDHP47989 1333 aa13.56□□□□□ -0.24
VPS13D-210ENST00000489961 DICER1Q9UPY3 1922 aaKnown RBP13.55□□□□□ -0.24
VPS13D-210ENST00000489961 RTFDC1Q9BY42 306 aaPredicted RBP13.55□□□□□ -0.24
VPS13D-210ENST00000489961 ZNF277Q9NRM2 450 aaPredicted RBP13.55□□□□□ -0.24
VPS13D-210ENST00000489961 ZBTB40Q9NUA8 1239 aa13.55□□□□□ -0.24
VPS13D-210ENST00000489961 PODXL2Q9NZ53 605 aa13.55□□□□□ -0.24
VPS13D-210ENST00000489961 RNF181Q9P0P0 153 aa13.55□□□□□ -0.24
VPS13D-210ENST00000489961 LTBP1Q14766 1721 aa13.55□□□□□ -0.24
VPS13D-210ENST00000489961 A0A1B0GUL6 1792 aa13.54□□□□□ -0.24
VPS13D-210ENST00000489961 C6orf229H3BNL8 230 aa13.54□□□□□ -0.24
VPS13D-210ENST00000489961 ATP2B4P23634 1241 aa13.54□□□□□ -0.24
VPS13D-210ENST00000489961 IARSP41252 1262 aaKnown RBP13.54□□□□□ -0.24
VPS13D-210ENST00000489961 RFX5P48382 616 aaPredicted RBP13.54□□□□□ -0.24
VPS13D-210ENST00000489961 ATP8B2P98198 1209 aa13.54□□□□□ -0.24
VPS13D-210ENST00000489961 PTPN12Q05209 780 aaKnown RBP13.54□□□□□ -0.24
VPS13D-210ENST00000489961 CHRNDQ07001 517 aa13.54□□□□□ -0.24
VPS13D-210ENST00000489961 C9orf131Q5VYM1 1079 aa13.54□□□□□ -0.24
VPS13D-210ENST00000489961 EYA3Q99504 573 aa13.54□□□□□ -0.24
VPS13D-210ENST00000489961 VPS33BQ9H267 617 aa13.54□□□□□ -0.24
VPS13D-210ENST00000489961 GGA1Q9UJY5 639 aa13.54□□□□□ -0.24
VPS13D-210ENST00000489961 FBXO3Q9UK99 471 aa13.54□□□□□ -0.24
VPS13D-210ENST00000489961 DUOX1Q9NRD9 1551 aa13.54□□□□□ -0.24
VPS13D-210ENST00000489961 UFL1O94874 794 aa13.53□□□□□ -0.24
VPS13D-210ENST00000489961 KLHDC4Q8TBB5 520 aa13.53□□□□□ -0.24
VPS13D-210ENST00000489961 TBC1D16Q8TBP0 767 aa13.53□□□□□ -0.24
VPS13D-210ENST00000489961 PUS3Q9BZE2 481 aaKnown RBP13.53□□□□□ -0.24
VPS13D-210ENST00000489961 COPRSQ9NQ92 184 aa13.53□□□□□ -0.24
VPS13D-210ENST00000489961 LEMD3Q9Y2U8 911 aa13.53□□□□□ -0.24
VPS13D-210ENST00000489961 MROH5Q6ZUA9 1318 aa13.53□□□□□ -0.24
VPS13D-210ENST00000489961 TIAM2Q8IVF5 1701 aa13.53□□□□□ -0.24
VPS13D-210ENST00000489961 PNMA6EA0A0J9YXQ4 647 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 EYA2O00167 538 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 PPIP5K2O43314 1243 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 CIAO1O76071 339 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 CENPBP07199 599 aaPredicted RBP13.52□□□□□ -0.25
VPS13D-210ENST00000489961 KCNJ4P48050 445 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 PRELPP51888 382 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 WASHC4Q2M389 1173 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 LRRC24Q50LG9 513 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 CEP85Q6P2H3 762 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 RPAP2Q8IXW5 612 aaPredicted RBP13.52□□□□□ -0.25
VPS13D-210ENST00000489961 LARGE2Q8N3Y3 721 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 CRBNQ96SW2 442 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 SIL1Q9H173 461 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 POLLQ9UGP5 575 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 RIPOR2Q9Y4F9 1068 aa13.52□□□□□ -0.25
VPS13D-210ENST00000489961 ZC3H4Q9UPT8 1303 aaKnown RBP13.51□□□□□ -0.25
VPS13D-210ENST00000489961 KIAA2012Q0VF49 1180 aa13.51□□□□□ -0.25
VPS13D-210ENST00000489961 POLA2Q14181 598 aa13.51□□□□□ -0.25
VPS13D-210ENST00000489961 AOC3Q16853 763 aa13.51□□□□□ -0.25
VPS13D-210ENST00000489961 METTL24Q5JXM2 366 aa13.51□□□□□ -0.25
VPS13D-210ENST00000489961 HELBQ8NG08 1087 aaPredicted RBP13.51□□□□□ -0.25
VPS13D-210ENST00000489961 SSH3Q8TE77 659 aa13.51□□□□□ -0.25
VPS13D-210ENST00000489961 JDP2Q8WYK2 163 aa13.51□□□□□ -0.25
VPS13D-210ENST00000489961 ZC3H12CQ9C0D7 883 aaKnown RBP13.51□□□□□ -0.25
VPS13D-210ENST00000489961 PA2G4Q9UQ80 394 aaKnown RBP13.51□□□□□ -0.25
VPS13D-210ENST00000489961 ZNF804BA4D1E1 1349 aa13.5□□□□□ -0.25
VPS13D-210ENST00000489961 HMMRO75330 724 aa13.5□□□□□ -0.25
VPS13D-210ENST00000489961 TAF5LO75529 589 aa13.5□□□□□ -0.25
VPS13D-210ENST00000489961 IL15P40933 162 aaPredicted RBP13.5□□□□□ -0.25
VPS13D-210ENST00000489961 NIM1KQ8IY84 436 aa13.5□□□□□ -0.25
VPS13D-210ENST00000489961 MED23Q9ULK4 1368 aa13.49□□□□□ -0.25
VPS13D-210ENST00000489961 G3V3G9 751 aa13.49□□□□□ -0.25
VPS13D-210ENST00000489961 RIMBP2O15034 1052 aa13.49□□□□□ -0.25
VPS13D-210ENST00000489961 PDE8BO95263 885 aa13.49□□□□□ -0.25
VPS13D-210ENST00000489961 G3BP1Q13283 466 aaKnown RBP eCLIP13.49□□□□□ -0.25
VPS13D-210ENST00000489961 AAMPQ13685 434 aa13.49□□□□□ -0.25
VPS13D-210ENST00000489961 UBE4AQ14139 1066 aa13.49□□□□□ -0.25
VPS13D-210ENST00000489961 DCAF8Q5TAQ9 597 aa13.49□□□□□ -0.25
VPS13D-210ENST00000489961 ATG9AQ7Z3C6 839 aa13.49□□□□□ -0.25
VPS13D-210ENST00000489961 CEP126Q9P2H0 1117 aa13.49□□□□□ -0.25
VPS13D-210ENST00000489961 GOLGB1Q14789 3259 aaKnown RBP13.49□□□□□ -0.25
VPS13D-210ENST00000489961 SURF6O75683 361 aaKnown RBP13.48□□□□□ -0.25
VPS13D-210ENST00000489961 YY1P25490 414 aa13.48□□□□□ -0.25
VPS13D-210ENST00000489961 OS9Q13438 667 aaPredicted RBP13.48□□□□□ -0.25
VPS13D-210ENST00000489961 GPR101Q96P66 508 aaPredicted RBP13.48□□□□□ -0.25
VPS13D-210ENST00000489961 PUM3Q15397 648 aaKnown RBP13.47□□□□□ -0.25
VPS13D-210ENST00000489961 VGLL2Q8N8G2 317 aa13.47□□□□□ -0.25
VPS13D-210ENST00000489961 ZNRF3Q9ULT6 936 aa13.47□□□□□ -0.25
VPS13D-210ENST00000489961 COL4A5P29400 1685 aa13.47□□□□□ -0.25
VPS13D-210ENST00000489961 WTIPA6NIX2 430 aaPredicted RBP13.46□□□□□ -0.25
VPS13D-210ENST00000489961 FZD9O00144 591 aa13.46□□□□□ -0.25
VPS13D-210ENST00000489961 SNAP23O00161 211 aa13.46□□□□□ -0.25
VPS13D-210ENST00000489961 EIF6P56537 245 aaKnown RBP13.46□□□□□ -0.25
VPS13D-210ENST00000489961 HSP90AB4PQ58FF6 505 aa13.46□□□□□ -0.25
VPS13D-210ENST00000489961 DPY19L2Q6NUT2 758 aa13.46□□□□□ -0.25
VPS13D-210ENST00000489961 C15orf52Q6ZUT6 534 aaKnown RBP13.46□□□□□ -0.25
VPS13D-210ENST00000489961 SIRT2Q8IXJ6 389 aa13.46□□□□□ -0.25
VPS13D-210ENST00000489961 DBNDD1Q9H9R9 158 aa13.46□□□□□ -0.25
VPS13D-210ENST00000489961 NOP58Q9Y2X3 529 aaKnown RBP13.46□□□□□ -0.25
VPS13D-210ENST00000489961 ECE2O60344 883 aa13.45□□□□□ -0.26
VPS13D-210ENST00000489961 IFIT1P09914 478 aaKnown RBP13.45□□□□□ -0.26
VPS13D-210ENST00000489961 SLC5A1P13866 664 aa13.45□□□□□ -0.26
VPS13D-210ENST00000489961 ATP2B3Q16720 1220 aa13.45□□□□□ -0.26
VPS13D-210ENST00000489961 DOK7Q18PE1 504 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms