RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.15□□□□□ -0.3
USP11-209ENST00000488848 FAM177BA6PVY3 158 aa13.14□□□□□ -0.31
USP11-209ENST00000488848 PDE8BO95263 885 aa13.14□□□□□ -0.31
USP11-209ENST00000488848 RPS8P62241 208 aaKnown RBP13.14□□□□□ -0.31
USP11-209ENST00000488848 TFCP2Q12800 502 aa13.14□□□□□ -0.31
USP11-209ENST00000488848 TAF7LQ5H9L4 462 aa13.14□□□□□ -0.31
USP11-209ENST00000488848 TTC22Q5TAA0 569 aa13.14□□□□□ -0.31
USP11-209ENST00000488848 DDX46Q7L014 1031 aaKnown RBP13.14□□□□□ -0.31
USP11-209ENST00000488848 ANKRD18AQ8IVF6 992 aa13.14□□□□□ -0.31
USP11-209ENST00000488848 OTUD7AQ8TE49 926 aaPredicted RBP13.14□□□□□ -0.31
USP11-209ENST00000488848 SGIP1Q9BQI5 828 aa13.14□□□□□ -0.31
USP11-209ENST00000488848 CEP126Q9P2H0 1117 aa13.14□□□□□ -0.31
USP11-209ENST00000488848 DBNLQ9UJU6 430 aaKnown RBP13.14□□□□□ -0.31
USP11-209ENST00000488848 RFX7Q2KHR2 1363 aa13.14□□□□□ -0.31
USP11-209ENST00000488848 TAF1P21675 1872 aa13.14□□□□□ -0.31
USP11-209ENST00000488848 SRGNP10124 158 aa13.13□□□□□ -0.31
USP11-209ENST00000488848 GSPT1P15170 499 aaKnown RBP13.13□□□□□ -0.31
USP11-209ENST00000488848 RGS3P49796 1198 aa13.13□□□□□ -0.31
USP11-209ENST00000488848 SKAP1Q86WV1 359 aa13.13□□□□□ -0.31
USP11-209ENST00000488848 GPATCH3Q96I76 525 aa13.13□□□□□ -0.31
USP11-209ENST00000488848 MPHOSPH8Q99549 860 aa13.13□□□□□ -0.31
USP11-209ENST00000488848 IL1RAPL2Q9NP60 686 aa13.13□□□□□ -0.31
USP11-209ENST00000488848 ECHDC1Q9NTX5 307 aa13.13□□□□□ -0.31
USP11-209ENST00000488848 SNED1Q8TER0 1413 aa13.13□□□□□ -0.31
USP11-209ENST00000488848 ERC2O15083 957 aa13.12□□□□□ -0.31
USP11-209ENST00000488848 MSH5O43196 834 aa13.12□□□□□ -0.31
USP11-209ENST00000488848 BBOX1O75936 387 aa13.12□□□□□ -0.31
USP11-209ENST00000488848 GLRX3O76003 335 aaKnown RBP13.12□□□□□ -0.31
USP11-209ENST00000488848 NPR1P16066 1061 aa13.12□□□□□ -0.31
USP11-209ENST00000488848 ATP5JP18859 108 aa13.12□□□□□ -0.31
USP11-209ENST00000488848 PUM3Q15397 648 aaKnown RBP13.12□□□□□ -0.31
USP11-209ENST00000488848 C15orf52Q6ZUT6 534 aaKnown RBP13.12□□□□□ -0.31
USP11-209ENST00000488848 AACSQ86V21 672 aa13.12□□□□□ -0.31
USP11-209ENST00000488848 C16orf71Q8IYS4 520 aaPredicted RBP13.12□□□□□ -0.31
USP11-209ENST00000488848 LPIN2Q92539 896 aa13.12□□□□□ -0.31
USP11-209ENST00000488848 CELF1Q92879 486 aaKnown RBP13.12□□□□□ -0.31
USP11-209ENST00000488848 CNNM1Q9NRU3 951 aa13.12□□□□□ -0.31
USP11-209ENST00000488848 BRCA1P38398 1863 aaKnown RBP13.12□□□□□ -0.31
USP11-209ENST00000488848 IRS2Q9Y4H2 1338 aa13.12□□□□□ -0.31
USP11-209ENST00000488848 AKAP11Q9UKA4 1901 aa13.11□□□□□ -0.31
USP11-209ENST00000488848 A0A1B0GUL7 405 aa13.11□□□□□ -0.31
USP11-209ENST00000488848 IFIT2P09913 472 aaKnown RBP13.11□□□□□ -0.31
USP11-209ENST00000488848 UBE4AQ14139 1066 aa13.11□□□□□ -0.31
USP11-209ENST00000488848 METTL24Q5JXM2 366 aa13.11□□□□□ -0.31
USP11-209ENST00000488848 STYK1Q6J9G0 422 aa13.11□□□□□ -0.31
USP11-209ENST00000488848 RBM17Q96I25 401 aaKnown RBP13.11□□□□□ -0.31
USP11-209ENST00000488848 CCDC85AQ96PX6 553 aaPredicted RBP13.11□□□□□ -0.31
USP11-209ENST00000488848 PDGFDQ9GZP0 370 aaPredicted RBP13.11□□□□□ -0.31
USP11-209ENST00000488848 ANKRD2Q9GZV1 360 aa13.11□□□□□ -0.31
USP11-209ENST00000488848 PODXL2Q9NZ53 605 aa13.11□□□□□ -0.31
USP11-209ENST00000488848 MINPP1Q9UNW1 487 aa13.11□□□□□ -0.31
USP11-209ENST00000488848 ZNF804BA4D1E1 1349 aa13.11□□□□□ -0.31
USP11-209ENST00000488848 AK9Q5TCS8 1911 aa13.1□□□□□ -0.31
USP11-209ENST00000488848 APBB1O00213 710 aa13.1□□□□□ -0.31
USP11-209ENST00000488848 CHRNDQ07001 517 aa13.1□□□□□ -0.31
USP11-209ENST00000488848 ATP2B3Q16720 1220 aa13.1□□□□□ -0.31
USP11-209ENST00000488848 C8orf34Q49A92 452 aa13.1□□□□□ -0.31
USP11-209ENST00000488848 RPGRQ92834 1020 aaKnown RBP13.1□□□□□ -0.31
USP11-209ENST00000488848 MASTLQ96GX5 879 aa13.1□□□□□ -0.31
USP11-209ENST00000488848 DUOX1Q9NRD9 1551 aa13.1□□□□□ -0.31
USP11-209ENST00000488848 PDS5AQ29RF7 1337 aaKnown RBP13.1□□□□□ -0.31
USP11-209ENST00000488848 NPHP1O15259 732 aa13.09□□□□□ -0.31
USP11-209ENST00000488848 IGSF3O75054 1194 aa13.09□□□□□ -0.31
USP11-209ENST00000488848 ALDH1B1P30837 517 aa13.09□□□□□ -0.31
USP11-209ENST00000488848 MSL1Q68DK7 614 aa13.09□□□□□ -0.31
USP11-209ENST00000488848 BACH2Q9BYV9 841 aa13.09□□□□□ -0.31
USP11-209ENST00000488848 TLR7Q9NYK1 1049 aaKnown RBP13.09□□□□□ -0.31
USP11-209ENST00000488848 EIF5BO60841 1220 aaKnown RBP13.08□□□□□ -0.32
USP11-209ENST00000488848 ARID4AP29374 1257 aaPredicted RBP13.08□□□□□ -0.32
USP11-209ENST00000488848 DBNDD2Q9BQY9 259 aa13.08□□□□□ -0.32
USP11-209ENST00000488848 LEMD3Q9Y2U8 911 aa13.08□□□□□ -0.32
USP11-209ENST00000488848 XDHP47989 1333 aa13.08□□□□□ -0.32
USP11-209ENST00000488848 DOCK2Q92608 1830 aa13.07□□□□□ -0.32
USP11-209ENST00000488848 SLC5A1P13866 664 aa13.07□□□□□ -0.32
USP11-209ENST00000488848 SDSP20132 328 aa13.07□□□□□ -0.32
USP11-209ENST00000488848 PTGER2P43116 358 aa13.07□□□□□ -0.32
USP11-209ENST00000488848 GRIPAP1Q4V328 841 aa13.07□□□□□ -0.32
USP11-209ENST00000488848 SP8Q8IXZ3 490 aa13.07□□□□□ -0.32
USP11-209ENST00000488848 XAGE2Q96GT9 111 aa13.07□□□□□ -0.32
USP11-209ENST00000488848 HAUS7Q99871 368 aa13.07□□□□□ -0.32
USP11-209ENST00000488848 ATP6V0A2Q9Y487 856 aa13.07□□□□□ -0.32
USP11-209ENST00000488848 EPB41L2O43491 1005 aaKnown RBP13.06□□□□□ -0.32
USP11-209ENST00000488848 IFIT1P09914 478 aaKnown RBP13.06□□□□□ -0.32
USP11-209ENST00000488848 POLD1P28340 1107 aa13.06□□□□□ -0.32
USP11-209ENST00000488848 TGFB2P61812 414 aa13.06□□□□□ -0.32
USP11-209ENST00000488848 TIMM10P62072 90 aa13.06□□□□□ -0.32
USP11-209ENST00000488848 R3HDM1Q15032 1099 aaKnown RBP13.06□□□□□ -0.32
USP11-209ENST00000488848 CC2D2BQ6DHV5 1058 aa13.06□□□□□ -0.32
USP11-209ENST00000488848 CCDC24Q8N4L8 307 aa13.06□□□□□ -0.32
USP11-209ENST00000488848 C7orf43Q8WVR3 580 aa13.06□□□□□ -0.32
USP11-209ENST00000488848 CNKSR1Q969H4 720 aa13.06□□□□□ -0.32
USP11-209ENST00000488848 CCDC8Q9H0W5 538 aaPredicted RBP13.06□□□□□ -0.32
USP11-209ENST00000488848 SLX4Q8IY92 1834 aa13.05□□□□□ -0.32
USP11-209ENST00000488848 H0YIN7 160 aa13.05□□□□□ -0.32
USP11-209ENST00000488848 SEMA3EO15041 775 aa13.05□□□□□ -0.32
USP11-209ENST00000488848 CDC45O75419 566 aa13.05□□□□□ -0.32
USP11-209ENST00000488848 UQCRFS1P1P0C7P4 283 aa13.05□□□□□ -0.32
USP11-209ENST00000488848 TMED8Q6PL24 325 aaPredicted RBP13.05□□□□□ -0.32
USP11-209ENST00000488848 EVI5LQ96CN4 794 aa13.05□□□□□ -0.32
USP11-209ENST00000488848 SNRKQ9NRH2 765 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms