RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 PTPN12Q05209 780 aaKnown RBP24.01■■□□□ 1.43
CCM2-216ENST00000488727 BSDC1Q9NW68 430 aaPredicted RBP24.01■■□□□ 1.43
CCM2-216ENST00000488727 NOP58Q9Y2X3 529 aaKnown RBP24.01■■□□□ 1.43
CCM2-216ENST00000488727 A0A1B0GUL6 1792 aa24.01■■□□□ 1.43
CCM2-216ENST00000488727 IGHDP01880 384 aa24.01■■□□□ 1.43
CCM2-216ENST00000488727 GPR162Q16538 588 aa24.01■■□□□ 1.43
CCM2-216ENST00000488727 TAF7LQ5H9L4 462 aa24.01■■□□□ 1.43
CCM2-216ENST00000488727 TMC4Q7Z404 712 aa24.01■■□□□ 1.43
CCM2-216ENST00000488727 SP8Q8IXZ3 490 aa24.01■■□□□ 1.43
CCM2-216ENST00000488727 POLA2Q14181 598 aa24■■□□□ 1.43
CCM2-216ENST00000488727 LTBP1Q14766 1721 aa24■■□□□ 1.43
CCM2-216ENST00000488727 SIRT2Q8IXJ6 389 aa24■■□□□ 1.43
CCM2-216ENST00000488727 SSH3Q8TE77 659 aa24■■□□□ 1.43
CCM2-216ENST00000488727 MPHOSPH8Q99549 860 aa24■■□□□ 1.43
CCM2-216ENST00000488727 PUS3Q9BZE2 481 aaKnown RBP24■■□□□ 1.43
CCM2-216ENST00000488727 PA2G4Q9UQ80 394 aaKnown RBP24■■□□□ 1.43
CCM2-216ENST00000488727 LDHAL6AQ6ZMR3 332 aa23.98■■□□□ 1.43
CCM2-216ENST00000488727 RPAP2Q8IXW5 612 aaPredicted RBP23.98■■□□□ 1.43
CCM2-216ENST00000488727 MINPP1Q9UNW1 487 aa23.98■■□□□ 1.43
CCM2-216ENST00000488727 PCDHB15Q9Y5E8 787 aa23.98■■□□□ 1.43
CCM2-216ENST00000488727 LRRC24Q50LG9 513 aa23.97■■□□□ 1.43
CCM2-216ENST00000488727 CCDC93Q567U6 631 aa23.97■■□□□ 1.43
CCM2-216ENST00000488727 COPRSQ9NQ92 184 aa23.97■■□□□ 1.43
CCM2-216ENST00000488727 DUOX1Q9NRD9 1551 aa23.97■■□□□ 1.43
CCM2-216ENST00000488727 SIL1Q9H173 461 aa23.96■■□□□ 1.43
CCM2-216ENST00000488727 SOGA3Q5TF21 947 aa23.96■■□□□ 1.43
CCM2-216ENST00000488727 CC2D2BQ6DHV5 1058 aa23.96■■□□□ 1.43
CCM2-216ENST00000488727 CNNM1Q9NRU3 951 aa23.96■■□□□ 1.43
CCM2-216ENST00000488727 RIPOR2Q9Y4F9 1068 aa23.96■■□□□ 1.43
CCM2-216ENST00000488727 GPSM2P81274 684 aa23.95■■□□□ 1.42
CCM2-216ENST00000488727 EYA2O00167 538 aa23.94■■□□□ 1.42
CCM2-216ENST00000488727 NFKBIEO00221 500 aa23.94■■□□□ 1.42
CCM2-216ENST00000488727 CHRNDQ07001 517 aa23.94■■□□□ 1.42
CCM2-216ENST00000488727 ATG9AQ7Z3C6 839 aa23.94■■□□□ 1.42
CCM2-216ENST00000488727 RTKN2Q8IZC4 609 aa23.93■■□□□ 1.42
CCM2-216ENST00000488727 TMX4Q9H1E5 349 aaPredicted RBP23.93■■□□□ 1.42
CCM2-216ENST00000488727 NSFL1CQ9UNZ2 370 aaKnown RBP23.93■■□□□ 1.42
CCM2-216ENST00000488727 C8orf34Q49A92 452 aa23.93■■□□□ 1.42
CCM2-216ENST00000488727 ARHGAP27Q6ZUM4 889 aa23.93■■□□□ 1.42
CCM2-216ENST00000488727 MPNDQ8N594 471 aa23.93■■□□□ 1.42
CCM2-216ENST00000488727 GRIN3BO60391 1043 aa23.92■■□□□ 1.42
CCM2-216ENST00000488727 HELBQ8NG08 1087 aaPredicted RBP23.92■■□□□ 1.42
CCM2-216ENST00000488727 PODXL2Q9NZ53 605 aa23.92■■□□□ 1.42
CCM2-216ENST00000488727 SBF1O95248 1867 aa23.91■■□□□ 1.42
CCM2-216ENST00000488727 CCDC88AQ3V6T2 1871 aa23.91■■□□□ 1.42
CCM2-216ENST00000488727 XDHP47989 1333 aa23.91■■□□□ 1.42
CCM2-216ENST00000488727 WTIPA6NIX2 430 aaPredicted RBP23.91■■□□□ 1.42
CCM2-216ENST00000488727 CIAO1O76071 339 aa23.91■■□□□ 1.42
CCM2-216ENST00000488727 RASSF7Q02833 373 aa23.91■■□□□ 1.42
CCM2-216ENST00000488727 DPP8Q6V1X1 898 aaPredicted RBP23.91■■□□□ 1.42
CCM2-216ENST00000488727 ANKIB1Q9P2G1 1089 aa23.91■■□□□ 1.42
CCM2-216ENST00000488727 FBXO3Q9UK99 471 aa23.91■■□□□ 1.42
CCM2-216ENST00000488727 HMMRO75330 724 aa23.9■■□□□ 1.42
CCM2-216ENST00000488727 TAF5LO75529 589 aa23.9■■□□□ 1.42
CCM2-216ENST00000488727 GRIPAP1Q4V328 841 aa23.9■■□□□ 1.42
CCM2-216ENST00000488727 TAOK3Q9H2K8 898 aa23.9■■□□□ 1.42
CCM2-216ENST00000488727 POLLQ9UGP5 575 aa23.9■■□□□ 1.42
CCM2-216ENST00000488727 MROH5Q6ZUA9 1318 aa23.9■■□□□ 1.42
CCM2-216ENST00000488727 PRELPP51888 382 aa23.9■■□□□ 1.42
CCM2-216ENST00000488727 FKBP4Q02790 459 aaKnown RBP eCLIP23.9■■□□□ 1.42
CCM2-216ENST00000488727 PSMD1Q99460 953 aa23.9■■□□□ 1.42
CCM2-216ENST00000488727 RTFDC1Q9BY42 306 aaPredicted RBP23.9■■□□□ 1.42
CCM2-216ENST00000488727 RWDD1Q9H446 243 aaPredicted RBP23.9■■□□□ 1.42
CCM2-216ENST00000488727 SURF6O75683 361 aaKnown RBP23.89■■□□□ 1.41
CCM2-216ENST00000488727 RGS3P49796 1198 aa23.89■■□□□ 1.41
CCM2-216ENST00000488727 VGLL2Q8N8G2 317 aa23.89■■□□□ 1.41
CCM2-216ENST00000488727 TBC1D16Q8TBP0 767 aa23.89■■□□□ 1.41
CCM2-216ENST00000488727 ANKRD2Q9GZV1 360 aa23.89■■□□□ 1.41
CCM2-216ENST00000488727 ZBTB47Q9UFB7 747 aaPredicted RBP23.89■■□□□ 1.41
CCM2-216ENST00000488727 LTBP3Q9NS15 1303 aa23.88■■□□□ 1.41
CCM2-216ENST00000488727 SNAP23O00161 211 aa23.88■■□□□ 1.41
CCM2-216ENST00000488727 IL15P40933 162 aaPredicted RBP23.88■■□□□ 1.41
CCM2-216ENST00000488727 METTL24Q5JXM2 366 aa23.88■■□□□ 1.41
CCM2-216ENST00000488727 GPR101Q96P66 508 aaPredicted RBP23.87■■□□□ 1.41
CCM2-216ENST00000488727 EXOC6BQ9Y2D4 811 aa23.87■■□□□ 1.41
CCM2-216ENST00000488727 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.87■■□□□ 1.41
CCM2-216ENST00000488727 UFL1O94874 794 aa23.87■■□□□ 1.41
CCM2-216ENST00000488727 ZNF277Q9NRM2 450 aaPredicted RBP23.87■■□□□ 1.41
CCM2-216ENST00000488727 GGA1Q9UJY5 639 aa23.87■■□□□ 1.41
CCM2-216ENST00000488727 DCAF8L1A6NGE4 600 aa23.86■■□□□ 1.41
CCM2-216ENST00000488727 G3BP1Q13283 466 aaKnown RBP eCLIP23.86■■□□□ 1.41
CCM2-216ENST00000488727 C6orf229H3BNL8 230 aa23.85■■□□□ 1.41
CCM2-216ENST00000488727 SASH1O94885 1247 aa23.85■■□□□ 1.41
CCM2-216ENST00000488727 PDE8BO95263 885 aa23.85■■□□□ 1.41
CCM2-216ENST00000488727 ATP2B4P23634 1241 aa23.85■■□□□ 1.41
CCM2-216ENST00000488727 DDRGK1Q96HY6 314 aa23.84■■□□□ 1.41
CCM2-216ENST00000488727 LEMD3Q9Y2U8 911 aa23.84■■□□□ 1.41
CCM2-216ENST00000488727 COL4A5P29400 1685 aa23.84■■□□□ 1.41
CCM2-216ENST00000488727 DICER1Q9UPY3 1922 aaKnown RBP23.84■■□□□ 1.41
CCM2-216ENST00000488727 ZNF804BA4D1E1 1349 aa23.84■■□□□ 1.41
CCM2-216ENST00000488727 TFCP2Q12800 502 aa23.84■■□□□ 1.41
CCM2-216ENST00000488727 HDAC1Q13547 482 aaPredicted RBP23.84■■□□□ 1.41
CCM2-216ENST00000488727 KLRK1P26718 216 aa23.83■■□□□ 1.41
CCM2-216ENST00000488727 OS9Q13438 667 aaPredicted RBP23.83■■□□□ 1.41
CCM2-216ENST00000488727 SUPT20HQ8NEM7 779 aa23.83■■□□□ 1.41
CCM2-216ENST00000488727 CEP126Q9P2H0 1117 aa23.83■■□□□ 1.41
CCM2-216ENST00000488727 AOC3Q16853 763 aa23.82■■□□□ 1.4
CCM2-216ENST00000488727 IRS2Q9Y4H2 1338 aa23.82■■□□□ 1.4
CCM2-216ENST00000488727 LMNB1P20700 586 aa23.81■■□□□ 1.4
CCM2-216ENST00000488727 IARSP41252 1262 aaKnown RBP23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 721.2 ms