RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ANKIB1Q9P2G1 1089 aa18.58■□□□□ 0.56
USP4-212ENST00000486549 KAZALD1Q96I82 304 aa18.57■□□□□ 0.56
USP4-212ENST00000486549 GPR101Q96P66 508 aaPredicted RBP18.57■□□□□ 0.56
USP4-212ENST00000486549 MPHOSPH8Q99549 860 aa18.57■□□□□ 0.56
USP4-212ENST00000486549 BICC1Q9H694 974 aaKnown RBP18.57■□□□□ 0.56
USP4-212ENST00000486549 ZNF541Q9H0D2 1346 aa18.56■□□□□ 0.56
USP4-212ENST00000486549 IQCA1LA6NCM1 817 aa18.56■□□□□ 0.56
USP4-212ENST00000486549 NIM1KQ8IY84 436 aa18.56■□□□□ 0.56
USP4-212ENST00000486549 BSDC1Q9NW68 430 aaPredicted RBP18.56■□□□□ 0.56
USP4-212ENST00000486549 POLLQ9UGP5 575 aa18.56■□□□□ 0.56
USP4-212ENST00000486549 RIMBP2O15034 1052 aa18.55■□□□□ 0.56
USP4-212ENST00000486549 UFL1O94874 794 aa18.55■□□□□ 0.56
USP4-212ENST00000486549 CCDC57Q2TAC2 916 aa18.55■□□□□ 0.56
USP4-212ENST00000486549 TAF7LQ5H9L4 462 aa18.55■□□□□ 0.56
USP4-212ENST00000486549 TBC1D16Q8TBP0 767 aa18.55■□□□□ 0.56
USP4-212ENST00000486549 ZNF594Q96JF6 807 aaPredicted RBP18.55■□□□□ 0.56
USP4-212ENST00000486549 XDHP47989 1333 aa18.54■□□□□ 0.56
USP4-212ENST00000486549 DDNO94850 711 aaPredicted RBP18.54■□□□□ 0.56
USP4-212ENST00000486549 UBTFL1P0CB47 393 aaPredicted RBP18.54■□□□□ 0.56
USP4-212ENST00000486549 KIAA2012Q0VF49 1180 aa18.54■□□□□ 0.56
USP4-212ENST00000486549 WASHC4Q2M389 1173 aa18.54■□□□□ 0.56
USP4-212ENST00000486549 INTS3Q68E01 1043 aaKnown RBP18.54■□□□□ 0.56
USP4-212ENST00000486549 ANKRD44Q8N8A2 993 aa18.54■□□□□ 0.56
USP4-212ENST00000486549 VPS33BQ9H267 617 aa18.54■□□□□ 0.56
USP4-212ENST00000486549 PODXL2Q9NZ53 605 aa18.54■□□□□ 0.56
USP4-212ENST00000486549 GGA1Q9UJY5 639 aa18.54■□□□□ 0.56
USP4-212ENST00000486549 MINPP1Q9UNW1 487 aa18.54■□□□□ 0.56
USP4-212ENST00000486549 A0A1B0GUL6 1792 aa18.54■□□□□ 0.56
USP4-212ENST00000486549 FZD9O00144 591 aa18.53■□□□□ 0.56
USP4-212ENST00000486549 EIF6P56537 245 aaKnown RBP18.53■□□□□ 0.56
USP4-212ENST00000486549 FTSJ3Q8IY81 847 aaKnown RBP18.53■□□□□ 0.56
USP4-212ENST00000486549 WDR90Q96KV7 1748 aa18.53■□□□□ 0.56
USP4-212ENST00000486549 EYA3Q99504 573 aa18.53■□□□□ 0.56
USP4-212ENST00000486549 MEIS3Q99687 375 aa18.53■□□□□ 0.56
USP4-212ENST00000486549 RABL6Q3YEC7 729 aaPredicted RBP18.52■□□□□ 0.56
USP4-212ENST00000486549 TMEM57Q8N5G2 664 aa18.52■□□□□ 0.56
USP4-212ENST00000486549 L3MBTL3Q96JM7 780 aaPredicted RBP18.52■□□□□ 0.56
USP4-212ENST00000486549 GJA3Q9Y6H8 435 aa18.52■□□□□ 0.56
USP4-212ENST00000486549 ATP2B4P23634 1241 aa18.51■□□□□ 0.55
USP4-212ENST00000486549 DBNDD1Q9H9R9 158 aa18.51■□□□□ 0.55
USP4-212ENST00000486549 RCAN3Q9UKA8 241 aa18.51■□□□□ 0.55
USP4-212ENST00000486549 LRRFIP2Q9Y608 721 aaKnown RBP18.51■□□□□ 0.55
USP4-212ENST00000486549 WTIPA6NIX2 430 aaPredicted RBP18.5■□□□□ 0.55
USP4-212ENST00000486549 CHRNDQ07001 517 aa18.5■□□□□ 0.55
USP4-212ENST00000486549 DOK7Q18PE1 504 aa18.5■□□□□ 0.55
USP4-212ENST00000486549 LDHAL6AQ6ZMR3 332 aa18.5■□□□□ 0.55
USP4-212ENST00000486549 DZIP1LQ8IYY4 767 aaKnown RBP18.5■□□□□ 0.55
USP4-212ENST00000486549 ZC3H12CQ9C0D7 883 aaKnown RBP18.5■□□□□ 0.55
USP4-212ENST00000486549 ANKRD2Q9GZV1 360 aa18.5■□□□□ 0.55
USP4-212ENST00000486549 CNNM1Q9NRU3 951 aa18.5■□□□□ 0.55
USP4-212ENST00000486549 ZNRF3Q9ULT6 936 aa18.5■□□□□ 0.55
USP4-212ENST00000486549 G3V3G9 751 aa18.49■□□□□ 0.55
USP4-212ENST00000486549 DCAF8Q5TAQ9 597 aa18.49■□□□□ 0.55
USP4-212ENST00000486549 GPC2Q8N158 579 aa18.49■□□□□ 0.55
USP4-212ENST00000486549 HELBQ8NG08 1087 aaPredicted RBP18.49■□□□□ 0.55
USP4-212ENST00000486549 CEP350Q5VT06 3117 aa18.48■□□□□ 0.55
USP4-212ENST00000486549 POTECB2RU33 542 aa18.48■□□□□ 0.55
USP4-212ENST00000486549 TAF5LO75529 589 aa18.48■□□□□ 0.55
USP4-212ENST00000486549 RAD17O75943 681 aa18.48■□□□□ 0.55
USP4-212ENST00000486549 GNAI3P08754 354 aa18.48■□□□□ 0.55
USP4-212ENST00000486549 RLBP1P12271 317 aa18.48■□□□□ 0.55
USP4-212ENST00000486549 KCNJ4P48050 445 aa18.48■□□□□ 0.55
USP4-212ENST00000486549 ITPRIPQ8IWB1 547 aa18.48■□□□□ 0.55
USP4-212ENST00000486549 KLHDC4Q8TBB5 520 aa18.48■□□□□ 0.55
USP4-212ENST00000486549 PUS3Q9BZE2 481 aaKnown RBP18.48■□□□□ 0.55
USP4-212ENST00000486549 HDAC5Q9UQL6 1122 aa18.48■□□□□ 0.55
USP4-212ENST00000486549 SCN4AP35499 1836 aa18.47■□□□□ 0.55
USP4-212ENST00000486549 YDJCA8MPS7 323 aa18.47■□□□□ 0.55
USP4-212ENST00000486549 PLIN1O60240 522 aa18.47■□□□□ 0.55
USP4-212ENST00000486549 ECE2O60344 883 aa18.47■□□□□ 0.55
USP4-212ENST00000486549 CXCL9Q07325 125 aa18.47■□□□□ 0.55
USP4-212ENST00000486549 PNMA8AQ86V59 439 aaPredicted RBP18.47■□□□□ 0.55
USP4-212ENST00000486549 ZNF804BA4D1E1 1349 aa18.47■□□□□ 0.55
USP4-212ENST00000486549 MED23Q9ULK4 1368 aa18.46■□□□□ 0.55
USP4-212ENST00000486549 CIAPIN1Q6FI81 312 aa18.46■□□□□ 0.55
USP4-212ENST00000486549 CHADLQ6NUI6 762 aa18.46■□□□□ 0.55
USP4-212ENST00000486549 PANK1Q8TE04 598 aa18.46■□□□□ 0.55
USP4-212ENST00000486549 HACL1Q9UJ83 578 aa18.46■□□□□ 0.55
USP4-212ENST00000486549 LEMD3Q9Y2U8 911 aa18.46■□□□□ 0.55
USP4-212ENST00000486549 SCN9AQ15858 1988 aa18.46■□□□□ 0.55
USP4-212ENST00000486549 SNAP23O00161 211 aa18.45■□□□□ 0.54
USP4-212ENST00000486549 KLRK1P26718 216 aa18.45■□□□□ 0.54
USP4-212ENST00000486549 LDHDQ86WU2 507 aa18.45■□□□□ 0.54
USP4-212ENST00000486549 LMOD1P29536 600 aaPredicted RBP18.44■□□□□ 0.54
USP4-212ENST00000486549 LRRC24Q50LG9 513 aa18.44■□□□□ 0.54
USP4-212ENST00000486549 TAF1DQ9H5J8 278 aaPredicted RBP18.44■□□□□ 0.54
USP4-212ENST00000486549 GNAI2P04899 355 aa18.43■□□□□ 0.54
USP4-212ENST00000486549 RFX5P48382 616 aaPredicted RBP18.43■□□□□ 0.54
USP4-212ENST00000486549 TNIP1Q15025 636 aa18.43■□□□□ 0.54
USP4-212ENST00000486549 TXNRD3Q86VQ6 643 aa18.43■□□□□ 0.54
USP4-212ENST00000486549 DNAJC5GQ8N7S2 189 aa18.43■□□□□ 0.54
USP4-212ENST00000486549 KCNQ5Q9NR82 932 aa18.43■□□□□ 0.54
USP4-212ENST00000486549 PSME4Q14997 1843 aa18.42■□□□□ 0.54
USP4-212ENST00000486549 PSMD14O00487 310 aa18.42■□□□□ 0.54
USP4-212ENST00000486549 MS4A1P11836 297 aa18.42■□□□□ 0.54
USP4-212ENST00000486549 EPHX2P34913 555 aa18.42■□□□□ 0.54
USP4-212ENST00000486549 METTL24Q5JXM2 366 aa18.42■□□□□ 0.54
USP4-212ENST00000486549 SIL1Q9H173 461 aa18.42■□□□□ 0.54
USP4-212ENST00000486549 RIPOR2Q9Y4F9 1068 aa18.42■□□□□ 0.54
USP4-212ENST00000486549 MROH5Q6ZUA9 1318 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms