RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PRPF40BQ6NWY9 871 aaKnown RBP15.16■□□□□ 0.02
SDC1-206ENST00000482879 TMC4Q7Z404 712 aa15.16■□□□□ 0.02
SDC1-206ENST00000482879 RIPOR2Q9Y4F9 1068 aa15.16■□□□□ 0.02
SDC1-206ENST00000482879 APBB1O00213 710 aa15.15■□□□□ 0.02
SDC1-206ENST00000482879 IL15P40933 162 aaPredicted RBP15.15■□□□□ 0.02
SDC1-206ENST00000482879 ATG9AQ7Z3C6 839 aa15.15■□□□□ 0.02
SDC1-206ENST00000482879 GCC1Q96CN9 775 aa15.15■□□□□ 0.02
SDC1-206ENST00000482879 WWC3Q9ULE0 1092 aa15.15■□□□□ 0.02
SDC1-206ENST00000482879 MINPP1Q9UNW1 487 aa15.15■□□□□ 0.02
SDC1-206ENST00000482879 RAB11FIP3O75154 756 aa15.14■□□□□ 0.01
SDC1-206ENST00000482879 DALRD3Q5D0E6 543 aaKnown RBP15.14■□□□□ 0.01
SDC1-206ENST00000482879 METTL24Q5JXM2 366 aa15.14■□□□□ 0.01
SDC1-206ENST00000482879 ERC1Q8IUD2 1116 aa15.14■□□□□ 0.01
SDC1-206ENST00000482879 SP8Q8IXZ3 490 aa15.14■□□□□ 0.01
SDC1-206ENST00000482879 TMX4Q9H1E5 349 aaPredicted RBP15.14■□□□□ 0.01
SDC1-206ENST00000482879 ZNF219Q9P2Y4 722 aaPredicted RBP15.14■□□□□ 0.01
SDC1-206ENST00000482879 ATP6V0A2Q9Y487 856 aa15.14■□□□□ 0.01
SDC1-206ENST00000482879 MROH5Q6ZUA9 1318 aa15.14■□□□□ 0.01
SDC1-206ENST00000482879 CHRNDQ07001 517 aa15.13■□□□□ 0.01
SDC1-206ENST00000482879 SMC5Q8IY18 1101 aa15.13■□□□□ 0.01
SDC1-206ENST00000482879 HELBQ8NG08 1087 aaPredicted RBP15.13■□□□□ 0.01
SDC1-206ENST00000482879 CEP126Q9P2H0 1117 aa15.13■□□□□ 0.01
SDC1-206ENST00000482879 C21orf2O43822 256 aa15.12■□□□□ 0.01
SDC1-206ENST00000482879 SASH1O94885 1247 aa15.12■□□□□ 0.01
SDC1-206ENST00000482879 TFCP2Q12800 502 aa15.12■□□□□ 0.01
SDC1-206ENST00000482879 SLC51AQ86UW1 340 aa15.12■□□□□ 0.01
SDC1-206ENST00000482879 RHPN1Q8TCX5 695 aa15.12■□□□□ 0.01
SDC1-206ENST00000482879 C7orf43Q8WVR3 580 aa15.12■□□□□ 0.01
SDC1-206ENST00000482879 KIF1BPQ96EK5 621 aa15.12■□□□□ 0.01
SDC1-206ENST00000482879 ANKRD2Q9GZV1 360 aa15.12■□□□□ 0.01
SDC1-206ENST00000482879 BCS1LQ9Y276 419 aa15.12■□□□□ 0.01
SDC1-206ENST00000482879 A0A1B0GUL6 1792 aa15.11■□□□□ 0.01
SDC1-206ENST00000482879 TAF5LO75529 589 aa15.11■□□□□ 0.01
SDC1-206ENST00000482879 ANKRD45Q5TZF3 282 aa15.11■□□□□ 0.01
SDC1-206ENST00000482879 OLFM4Q6UX06 510 aa15.11■□□□□ 0.01
SDC1-206ENST00000482879 CENPQQ7L2Z9 268 aaPredicted RBP15.11■□□□□ 0.01
SDC1-206ENST00000482879 LRRCC1Q9C099 1032 aa15.11■□□□□ 0.01
SDC1-206ENST00000482879 BCL11AQ9H165 835 aa15.11■□□□□ 0.01
SDC1-206ENST00000482879 ANKIB1Q9P2G1 1089 aa15.11■□□□□ 0.01
SDC1-206ENST00000482879 ZBTB47Q9UFB7 747 aaPredicted RBP15.11■□□□□ 0.01
SDC1-206ENST00000482879 NSFL1CQ9UNZ2 370 aaKnown RBP15.11■□□□□ 0.01
SDC1-206ENST00000482879 LRRC37AA6NMS7 1700 aa15.11■□□□□ 0.01
SDC1-206ENST00000482879 ARFGEF1Q9Y6D6 1849 aa15.1■□□□□ 0.01
SDC1-206ENST00000482879 SMARCA5O60264 1052 aaPredicted RBP15.1■□□□□ 0.01
SDC1-206ENST00000482879 PDE8BO95263 885 aa15.1■□□□□ 0.01
SDC1-206ENST00000482879 GPSM2P81274 684 aa15.1■□□□□ 0.01
SDC1-206ENST00000482879 CC2D2BQ6DHV5 1058 aa15.1■□□□□ 0.01
SDC1-206ENST00000482879 IL1RAPL2Q9NP60 686 aa15.1■□□□□ 0.01
SDC1-206ENST00000482879 XDHP47989 1333 aa15.1■□□□□ 0.01
SDC1-206ENST00000482879 KDM2BQ8NHM5 1336 aa15.1■□□□□ 0.01
SDC1-206ENST00000482879 MPNDQ8N594 471 aa15.09■□□□□ 0.01
SDC1-206ENST00000482879 VGLL2Q8N8G2 317 aa15.09■□□□□ 0.01
SDC1-206ENST00000482879 AKAP2Q9Y2D5 859 aa15.09■□□□□ 0.01
SDC1-206ENST00000482879 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.09■□□□□ 0.01
SDC1-206ENST00000482879 ATP2B4P23634 1241 aa15.08■□□□□ 0
SDC1-206ENST00000482879 KCNJ4P48050 445 aa15.08■□□□□ 0
SDC1-206ENST00000482879 GRIPAP1Q4V328 841 aa15.08■□□□□ 0
SDC1-206ENST00000482879 CCDC93Q567U6 631 aa15.08■□□□□ 0
SDC1-206ENST00000482879 SOGA3Q5TF21 947 aa15.08■□□□□ 0
SDC1-206ENST00000482879 DPP8Q6V1X1 898 aaPredicted RBP15.08■□□□□ 0
SDC1-206ENST00000482879 CLASRPQ8N2M8 674 aaKnown RBP15.08■□□□□ 0
SDC1-206ENST00000482879 PODXL2Q9NZ53 605 aa15.08■□□□□ 0
SDC1-206ENST00000482879 GGA1Q9UJY5 639 aa15.08■□□□□ 0
SDC1-206ENST00000482879 LEMD3Q9Y2U8 911 aa15.08■□□□□ 0
SDC1-206ENST00000482879 SNAP23O00161 211 aa15.07■□□□□ 0
SDC1-206ENST00000482879 NUCB1Q02818 461 aa15.07■□□□□ 0
SDC1-206ENST00000482879 UBE4AQ14139 1066 aa15.07■□□□□ 0
SDC1-206ENST00000482879 PUM3Q15397 648 aaKnown RBP15.07■□□□□ 0
SDC1-206ENST00000482879 ATP2B3Q16720 1220 aa15.07■□□□□ 0
SDC1-206ENST00000482879 TNNI3KQ59H18 835 aa15.07■□□□□ 0
SDC1-206ENST00000482879 RTKN2Q8IZC4 609 aa15.07■□□□□ 0
SDC1-206ENST00000482879 PELP1Q8IZL8 1130 aaKnown RBP15.07■□□□□ 0
SDC1-206ENST00000482879 GPR108Q9NPR9 543 aa15.07■□□□□ 0
SDC1-206ENST00000482879 FPGT-TNNI3KV9GXZ4 949 aa15.07■□□□□ 0
SDC1-206ENST00000482879 FER1L6Q2WGJ9 1857 aa15.06■□□□□ 0
SDC1-206ENST00000482879 WTIPA6NIX2 430 aaPredicted RBP15.06■□□□□ 0
SDC1-206ENST00000482879 C6orf229H3BNL8 230 aa15.06■□□□□ 0
SDC1-206ENST00000482879 UFL1O94874 794 aa15.06■□□□□ 0
SDC1-206ENST00000482879 SLC5A1P13866 664 aa15.06■□□□□ 0
SDC1-206ENST00000482879 FGFR2P21802 821 aa15.06■□□□□ 0
SDC1-206ENST00000482879 TIMM10P62072 90 aa15.06■□□□□ 0
SDC1-206ENST00000482879 AACSQ86V21 672 aa15.06■□□□□ 0
SDC1-206ENST00000482879 CHD1LQ86WJ1 897 aa15.06■□□□□ 0
SDC1-206ENST00000482879 TBC1D16Q8TBP0 767 aa15.06■□□□□ 0
SDC1-206ENST00000482879 LPIN2Q92539 896 aa15.06■□□□□ 0
SDC1-206ENST00000482879 EAF2Q96CJ1 260 aaPredicted RBP15.06■□□□□ 0
SDC1-206ENST00000482879 NEUROD6Q96NK8 337 aa15.06■□□□□ 0
SDC1-206ENST00000482879 LNPKQ9C0E8 428 aa15.06■□□□□ 0
SDC1-206ENST00000482879 POLLQ9UGP5 575 aa15.06■□□□□ 0
SDC1-206ENST00000482879 ZNF804BA4D1E1 1349 aa15.06■□□□□ 0
SDC1-206ENST00000482879 LTBP1Q14766 1721 aa15.06■□□□□ 0
SDC1-206ENST00000482879 A0A1B0GUL7 405 aa15.05■□□□□ -0
SDC1-206ENST00000482879 IFIT1P09914 478 aaKnown RBP15.05■□□□□ -0
SDC1-206ENST00000482879 CCDC8Q9H0W5 538 aaPredicted RBP15.05■□□□□ -0
SDC1-206ENST00000482879 CCDC88AQ3V6T2 1871 aa15.04■□□□□ -0
SDC1-206ENST00000482879 ZNF609O15014 1411 aa15.04■□□□□ -0
SDC1-206ENST00000482879 IFIT2P09913 472 aaKnown RBP15.04■□□□□ -0
SDC1-206ENST00000482879 C16orf71Q8IYS4 520 aaPredicted RBP15.04■□□□□ -0
SDC1-206ENST00000482879 SUPT20HQ8NEM7 779 aa15.04■□□□□ -0
SDC1-206ENST00000482879 GPR101Q96P66 508 aaPredicted RBP15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms