RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 GGA1Q9UJY5 639 aa27.63■■■□□ 2.01
COL9A3-211ENST00000477612 XDHP47989 1333 aa27.63■■■□□ 2.01
COL9A3-211ENST00000477612 PASKQ96RG2 1323 aa27.63■■■□□ 2.01
COL9A3-211ENST00000477612 SCN9AQ15858 1988 aa27.62■■■□□ 2.01
COL9A3-211ENST00000477612 RIMBP2O15034 1052 aa27.62■■■□□ 2.01
COL9A3-211ENST00000477612 ITGBL1O95965 494 aaPredicted RBP27.62■■■□□ 2.01
COL9A3-211ENST00000477612 HTRA3P83110 453 aa27.62■■■□□ 2.01
COL9A3-211ENST00000477612 USP50Q70EL3 339 aaPredicted RBP27.62■■■□□ 2.01
COL9A3-211ENST00000477612 ZC3H12CQ9C0D7 883 aaKnown RBP27.62■■■□□ 2.01
COL9A3-211ENST00000477612 RAD17O75943 681 aa27.61■■■□□ 2.01
COL9A3-211ENST00000477612 ALDH1L2Q3SY69 923 aa27.61■■■□□ 2.01
COL9A3-211ENST00000477612 DIEXFQ68CQ4 756 aaKnown RBP27.61■■■□□ 2.01
COL9A3-211ENST00000477612 SSH1Q8WYL5 1049 aa27.61■■■□□ 2.01
COL9A3-211ENST00000477612 MINPP1Q9UNW1 487 aa27.61■■■□□ 2.01
COL9A3-211ENST00000477612 PTPRCP08575 1304 aa27.61■■■□□ 2.01
COL9A3-211ENST00000477612 GRM8O00222 908 aa27.6■■■□□ 2.01
COL9A3-211ENST00000477612 UFL1O94874 794 aa27.6■■■□□ 2.01
COL9A3-211ENST00000477612 CT47B1P0C2W7 299 aaPredicted RBP27.6■■■□□ 2.01
COL9A3-211ENST00000477612 ITGA6P23229 1130 aa27.6■■■□□ 2.01
COL9A3-211ENST00000477612 ATP2B4P23634 1241 aa27.6■■■□□ 2.01
COL9A3-211ENST00000477612 FOXO4P98177 505 aa27.6■■■□□ 2.01
COL9A3-211ENST00000477612 SRCIN1Q9C0H9 1055 aa27.6■■■□□ 2.01
COL9A3-211ENST00000477612 DBNDD1Q9H9R9 158 aa27.6■■■□□ 2.01
COL9A3-211ENST00000477612 ECE2O60344 883 aa27.59■■■□□ 2.01
COL9A3-211ENST00000477612 GMPSP49915 693 aaPredicted RBP27.59■■■□□ 2.01
COL9A3-211ENST00000477612 KLRG1Q96E93 195 aa27.59■■■□□ 2.01
COL9A3-211ENST00000477612 GPR101Q96P66 508 aaPredicted RBP27.59■■■□□ 2.01
COL9A3-211ENST00000477612 ADARB2Q9NS39 739 aaKnown RBP27.59■■■□□ 2.01
COL9A3-211ENST00000477612 CLEC11AQ9Y240 323 aa27.59■■■□□ 2.01
COL9A3-211ENST00000477612 IGHMBP2P38935 993 aaKnown RBP27.58■■■□□ 2.01
COL9A3-211ENST00000477612 FAM161AQ3B820 660 aa27.58■■■□□ 2.01
COL9A3-211ENST00000477612 SLC4A10Q6U841 1118 aa27.57■■■□□ 2
COL9A3-211ENST00000477612 MIER1Q8N108 512 aa27.57■■■□□ 2
COL9A3-211ENST00000477612 DPF2Q92785 391 aa27.57■■■□□ 2
COL9A3-211ENST00000477612 PSMD14O00487 310 aa27.56■■■□□ 2
COL9A3-211ENST00000477612 DOK7Q18PE1 504 aa27.56■■■□□ 2
COL9A3-211ENST00000477612 CNTROBQ8N137 903 aa27.56■■■□□ 2
COL9A3-211ENST00000477612 UTYO14607 1347 aa27.56■■■□□ 2
COL9A3-211ENST00000477612 A0A1B0GUL6 1792 aa27.55■■■□□ 2
COL9A3-211ENST00000477612 BCL2L13Q9BXK5 485 aa27.55■■■□□ 2
COL9A3-211ENST00000477612 CREBZFQ9NS37 354 aa27.55■■■□□ 2
COL9A3-211ENST00000477612 C9orf78Q9NZ63 289 aaPredicted RBP27.55■■■□□ 2
COL9A3-211ENST00000477612 ANKRD18BA2A2Z9 1011 aa27.54■■■□□ 2
COL9A3-211ENST00000477612 CCT4P50991 539 aaKnown RBP27.54■■■□□ 2
COL9A3-211ENST00000477612 EPHA10Q5JZY3 1008 aa27.54■■■□□ 2
COL9A3-211ENST00000477612 MAP1SQ66K74 1059 aaPredicted RBP27.54■■■□□ 2
COL9A3-211ENST00000477612 JMYQ8N9B5 988 aa27.54■■■□□ 2
COL9A3-211ENST00000477612 MPHOSPH8Q99549 860 aa27.54■■■□□ 2
COL9A3-211ENST00000477612 KCNQ5Q9NR82 932 aa27.54■■■□□ 2
COL9A3-211ENST00000477612 PGAP2Q9UHJ9 254 aa27.54■■■□□ 2
COL9A3-211ENST00000477612 CNOT7Q9UIV1 285 aaKnown RBP27.54■■■□□ 2
COL9A3-211ENST00000477612 MED23Q9ULK4 1368 aa27.54■■■□□ 2
COL9A3-211ENST00000477612 LEMD3Q9Y2U8 911 aa27.54■■■□□ 2
COL9A3-211ENST00000477612 TRPM7Q96QT4 1865 aa27.53■■■□□ 2
COL9A3-211ENST00000477612 VIL1P09327 827 aaKnown RBP27.53■■■□□ 2
COL9A3-211ENST00000477612 RPS12P25398 132 aaKnown RBP27.53■■■□□ 2
COL9A3-211ENST00000477612 BRPF1P55201 1214 aaPredicted RBP27.53■■■□□ 2
COL9A3-211ENST00000477612 ANKRD2Q9GZV1 360 aa27.53■■■□□ 2
COL9A3-211ENST00000477612 ZNF609O15014 1411 aa27.52■■■□□ 2
COL9A3-211ENST00000477612 WTIPA6NIX2 430 aaPredicted RBP27.52■■■□□ 2
COL9A3-211ENST00000477612 IFIT5Q13325 482 aaKnown RBP27.52■■■□□ 2
COL9A3-211ENST00000477612 LMBR1LQ6UX01 489 aa27.52■■■□□ 2
COL9A3-211ENST00000477612 ZBTB12Q9Y330 459 aaPredicted RBP27.52■■■□□ 2
COL9A3-211ENST00000477612 PODNQ7Z5L7 613 aa27.51■■□□□ 1.99
COL9A3-211ENST00000477612 ZNF646O15015 1829 aaPredicted RBP27.51■■□□□ 1.99
COL9A3-211ENST00000477612 ZC3H15Q8WU90 426 aaKnown RBP27.5■■□□□ 1.99
COL9A3-211ENST00000477612 KAZALD1Q96I82 304 aa27.5■■□□□ 1.99
COL9A3-211ENST00000477612 G3V3G9 751 aa27.49■■□□□ 1.99
COL9A3-211ENST00000477612 H7C1D1 291 aa27.49■■□□□ 1.99
COL9A3-211ENST00000477612 NBPF7P0C2Y1 421 aaPredicted RBP27.49■■□□□ 1.99
COL9A3-211ENST00000477612 HIRAP54198 1017 aaPredicted RBP27.49■■□□□ 1.99
COL9A3-211ENST00000477612 DCAF8Q5TAQ9 597 aa27.49■■□□□ 1.99
COL9A3-211ENST00000477612 POLR2AP24928 1970 aaKnown RBP27.49■■□□□ 1.99
COL9A3-211ENST00000477612 TMEM88BA6NKF7 163 aa27.48■■□□□ 1.99
COL9A3-211ENST00000477612 CHRNDQ07001 517 aa27.48■■□□□ 1.99
COL9A3-211ENST00000477612 MICALL2Q8IY33 904 aa27.48■■□□□ 1.99
COL9A3-211ENST00000477612 SUCLG2Q96I99 432 aa27.48■■□□□ 1.99
COL9A3-211ENST00000477612 SMC4Q9NTJ3 1288 aa27.48■■□□□ 1.99
COL9A3-211ENST00000477612 ZNF804BA4D1E1 1349 aa27.47■■□□□ 1.99
COL9A3-211ENST00000477612 SHTN1A0MZ66 631 aa27.47■■□□□ 1.99
COL9A3-211ENST00000477612 CCDC57Q2TAC2 916 aa27.47■■□□□ 1.99
COL9A3-211ENST00000477612 RABL6Q3YEC7 729 aaPredicted RBP27.46■■□□□ 1.99
COL9A3-211ENST00000477612 TRPM4Q8TD43 1214 aa27.46■■□□□ 1.99
COL9A3-211ENST00000477612 CHMP3Q9Y3E7 222 aa27.46■■□□□ 1.99
COL9A3-211ENST00000477612 PCNTO95613 3336 aa27.45■■□□□ 1.99
COL9A3-211ENST00000477612 TXNRD3Q86VQ6 643 aa27.45■■□□□ 1.98
COL9A3-211ENST00000477612 AGBL3Q8NEM8 1001 aa27.45■■□□□ 1.98
COL9A3-211ENST00000477612 COA1Q9GZY4 146 aa27.45■■□□□ 1.98
COL9A3-211ENST00000477612 USP44Q9H0E7 712 aa27.45■■□□□ 1.98
COL9A3-211ENST00000477612 RSBN1LQ6PCB5 846 aaPredicted RBP27.44■■□□□ 1.98
COL9A3-211ENST00000477612 IRS2Q9Y4H2 1338 aa27.43■■□□□ 1.98
COL9A3-211ENST00000477612 USP17L3A6NCW0 530 aa27.43■■□□□ 1.98
COL9A3-211ENST00000477612 USP17L4A6NCW7 530 aa27.43■■□□□ 1.98
COL9A3-211ENST00000477612 RARSP54136 660 aaKnown RBP27.43■■□□□ 1.98
COL9A3-211ENST00000477612 C15orf52Q6ZUT6 534 aaKnown RBP27.43■■□□□ 1.98
COL9A3-211ENST00000477612 USP17L1Q7RTZ2 530 aa27.43■■□□□ 1.98
COL9A3-211ENST00000477612 GMLQ99445 158 aa27.43■■□□□ 1.98
COL9A3-211ENST00000477612 SAMD7Q7Z3H4 446 aa27.42■■□□□ 1.98
COL9A3-211ENST00000477612 ZNF594Q96JF6 807 aaPredicted RBP27.42■■□□□ 1.98
COL9A3-211ENST00000477612 NOB1Q9ULX3 412 aaKnown RBP27.42■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms