RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 PODXL2Q9NZ53 605 aa12.2□□□□□ -0.46
HDAC3-208ENST00000476739 RCAN3Q9UKA8 241 aa12.2□□□□□ -0.46
HDAC3-208ENST00000476739 GLTPD2A6NH11 291 aa12.19□□□□□ -0.46
HDAC3-208ENST00000476739 C6orf229H3BNL8 230 aa12.19□□□□□ -0.46
HDAC3-208ENST00000476739 RIMBP2O15034 1052 aa12.19□□□□□ -0.46
HDAC3-208ENST00000476739 PLIN1O60240 522 aa12.19□□□□□ -0.46
HDAC3-208ENST00000476739 DDNO94850 711 aaPredicted RBP12.19□□□□□ -0.46
HDAC3-208ENST00000476739 UBTFL1P0CB47 393 aaPredicted RBP12.19□□□□□ -0.46
HDAC3-208ENST00000476739 KIAA2012Q0VF49 1180 aa12.19□□□□□ -0.46
HDAC3-208ENST00000476739 CCDC57Q2TAC2 916 aa12.19□□□□□ -0.46
HDAC3-208ENST00000476739 SUPT20HQ8NEM7 779 aa12.19□□□□□ -0.46
HDAC3-208ENST00000476739 KLHDC4Q8TBB5 520 aa12.19□□□□□ -0.46
HDAC3-208ENST00000476739 MPHOSPH8Q99549 860 aa12.19□□□□□ -0.46
HDAC3-208ENST00000476739 PUS3Q9BZE2 481 aaKnown RBP12.19□□□□□ -0.46
HDAC3-208ENST00000476739 ANKIB1Q9P2G1 1089 aa12.19□□□□□ -0.46
HDAC3-208ENST00000476739 LRRFIP2Q9Y608 721 aaKnown RBP12.19□□□□□ -0.46
HDAC3-208ENST00000476739 A0A1B0GUL6 1792 aa12.18□□□□□ -0.46
HDAC3-208ENST00000476739 YDJCA8MPS7 323 aa12.18□□□□□ -0.46
HDAC3-208ENST00000476739 POTECB2RU33 542 aa12.18□□□□□ -0.46
HDAC3-208ENST00000476739 SNAP23O00161 211 aa12.18□□□□□ -0.46
HDAC3-208ENST00000476739 KIF3CO14782 793 aa12.18□□□□□ -0.46
HDAC3-208ENST00000476739 UFL1O94874 794 aa12.18□□□□□ -0.46
HDAC3-208ENST00000476739 WASHC4Q2M389 1173 aa12.18□□□□□ -0.46
HDAC3-208ENST00000476739 DZIP1LQ8IYY4 767 aaKnown RBP12.18□□□□□ -0.46
HDAC3-208ENST00000476739 PANK1Q8TE04 598 aa12.18□□□□□ -0.46
HDAC3-208ENST00000476739 RRAGCQ9HB90 399 aa12.18□□□□□ -0.46
HDAC3-208ENST00000476739 XDHP47989 1333 aa12.17□□□□□ -0.46
HDAC3-208ENST00000476739 TAF5LO75529 589 aa12.17□□□□□ -0.46
HDAC3-208ENST00000476739 KLRK1P26718 216 aa12.17□□□□□ -0.46
HDAC3-208ENST00000476739 RFX5P48382 616 aaPredicted RBP12.17□□□□□ -0.46
HDAC3-208ENST00000476739 CHRNDQ07001 517 aa12.17□□□□□ -0.46
HDAC3-208ENST00000476739 FTSJ3Q8IY81 847 aaKnown RBP12.17□□□□□ -0.46
HDAC3-208ENST00000476739 NIM1KQ8IY84 436 aa12.17□□□□□ -0.46
HDAC3-208ENST00000476739 HELBQ8NG08 1087 aaPredicted RBP12.17□□□□□ -0.46
HDAC3-208ENST00000476739 JDP2Q8WYK2 163 aa12.17□□□□□ -0.46
HDAC3-208ENST00000476739 VPS33BQ9H267 617 aa12.17□□□□□ -0.46
HDAC3-208ENST00000476739 GGA1Q9UJY5 639 aa12.17□□□□□ -0.46
HDAC3-208ENST00000476739 KDM2BQ8NHM5 1336 aa12.16□□□□□ -0.46
HDAC3-208ENST00000476739 ATP2B4P23634 1241 aa12.16□□□□□ -0.46
HDAC3-208ENST00000476739 DOK7Q18PE1 504 aa12.16□□□□□ -0.46
HDAC3-208ENST00000476739 LRRC24Q50LG9 513 aa12.16□□□□□ -0.46
HDAC3-208ENST00000476739 TAF7LQ5H9L4 462 aa12.16□□□□□ -0.46
HDAC3-208ENST00000476739 DPY19L2Q6NUT2 758 aa12.16□□□□□ -0.46
HDAC3-208ENST00000476739 LDHAL6AQ6ZMR3 332 aa12.16□□□□□ -0.46
HDAC3-208ENST00000476739 TXNRD3Q86VQ6 643 aa12.16□□□□□ -0.46
HDAC3-208ENST00000476739 DBNDD1Q9H9R9 158 aa12.16□□□□□ -0.46
HDAC3-208ENST00000476739 KCNQ5Q9NR82 932 aa12.16□□□□□ -0.46
HDAC3-208ENST00000476739 WDR90Q96KV7 1748 aa12.16□□□□□ -0.46
HDAC3-208ENST00000476739 CXCL9Q07325 125 aa12.15□□□□□ -0.46
HDAC3-208ENST00000476739 C20orf194Q5TEA3 1177 aa12.15□□□□□ -0.46
HDAC3-208ENST00000476739 ITPRIPQ8IWB1 547 aa12.15□□□□□ -0.46
HDAC3-208ENST00000476739 EYA3Q99504 573 aa12.15□□□□□ -0.46
HDAC3-208ENST00000476739 CNNM1Q9NRU3 951 aa12.15□□□□□ -0.46
HDAC3-208ENST00000476739 ZNRF3Q9ULT6 936 aa12.15□□□□□ -0.46
HDAC3-208ENST00000476739 RIPOR2Q9Y4F9 1068 aa12.15□□□□□ -0.46
HDAC3-208ENST00000476739 ZNF804BA4D1E1 1349 aa12.14□□□□□ -0.47
HDAC3-208ENST00000476739 SCN9AQ15858 1988 aa12.14□□□□□ -0.47
HDAC3-208ENST00000476739 ZBTB7BO15156 539 aaPredicted RBP12.14□□□□□ -0.47
HDAC3-208ENST00000476739 ECE2O60344 883 aa12.14□□□□□ -0.47
HDAC3-208ENST00000476739 RAD17O75943 681 aa12.14□□□□□ -0.47
HDAC3-208ENST00000476739 GNAI3P08754 354 aa12.14□□□□□ -0.47
HDAC3-208ENST00000476739 EIF6P56537 245 aaKnown RBP12.14□□□□□ -0.47
HDAC3-208ENST00000476739 PTPN12Q05209 780 aaKnown RBP12.14□□□□□ -0.47
HDAC3-208ENST00000476739 ZC3H12CQ9C0D7 883 aaKnown RBP12.14□□□□□ -0.47
HDAC3-208ENST00000476739 ANKRD2Q9GZV1 360 aa12.14□□□□□ -0.47
HDAC3-208ENST00000476739 C1orf115Q9H7X2 142 aa12.14□□□□□ -0.47
HDAC3-208ENST00000476739 GJA3Q9Y6H8 435 aa12.14□□□□□ -0.47
HDAC3-208ENST00000476739 IRS2Q9Y4H2 1338 aa12.13□□□□□ -0.47
HDAC3-208ENST00000476739 GPC2Q8N158 579 aa12.13□□□□□ -0.47
HDAC3-208ENST00000476739 L3MBTL3Q96JM7 780 aaPredicted RBP12.13□□□□□ -0.47
HDAC3-208ENST00000476739 PA2G4Q9UQ80 394 aaKnown RBP12.13□□□□□ -0.47
HDAC3-208ENST00000476739 LEMD3Q9Y2U8 911 aa12.13□□□□□ -0.47
HDAC3-208ENST00000476739 COG6Q9Y2V7 657 aa12.13□□□□□ -0.47
HDAC3-208ENST00000476739 MED23Q9ULK4 1368 aa12.13□□□□□ -0.47
HDAC3-208ENST00000476739 PNMA6EA0A0J9YXQ4 647 aa12.12□□□□□ -0.47
HDAC3-208ENST00000476739 GNAI2P04899 355 aa12.12□□□□□ -0.47
HDAC3-208ENST00000476739 SCNN1DP51172 638 aa12.12□□□□□ -0.47
HDAC3-208ENST00000476739 ATG9AQ7Z3C6 839 aa12.12□□□□□ -0.47
HDAC3-208ENST00000476739 VGLL2Q8N8G2 317 aa12.12□□□□□ -0.47
HDAC3-208ENST00000476739 SIL1Q9H173 461 aa12.12□□□□□ -0.47
HDAC3-208ENST00000476739 SHTN1A0MZ66 631 aa12.11□□□□□ -0.47
HDAC3-208ENST00000476739 EYA2O00167 538 aa12.11□□□□□ -0.47
HDAC3-208ENST00000476739 PSMD14O00487 310 aa12.11□□□□□ -0.47
HDAC3-208ENST00000476739 SRGAP3O43295 1099 aa12.11□□□□□ -0.47
HDAC3-208ENST00000476739 POTEIP0CG38 1075 aa12.11□□□□□ -0.47
HDAC3-208ENST00000476739 POTEJP0CG39 1038 aa12.11□□□□□ -0.47
HDAC3-208ENST00000476739 VEGFAP15692 232 aaPredicted RBP12.11□□□□□ -0.47
HDAC3-208ENST00000476739 KCNJ4P48050 445 aa12.11□□□□□ -0.47
HDAC3-208ENST00000476739 MTX1Q13505 466 aa12.11□□□□□ -0.47
HDAC3-208ENST00000476739 MVPQ14764 893 aaKnown RBP12.11□□□□□ -0.47
HDAC3-208ENST00000476739 CIAPIN1Q6FI81 312 aa12.11□□□□□ -0.47
HDAC3-208ENST00000476739 HDAC5Q9UQL6 1122 aa12.11□□□□□ -0.47
HDAC3-208ENST00000476739 ZBTB12Q9Y330 459 aaPredicted RBP12.11□□□□□ -0.47
HDAC3-208ENST00000476739 MROH5Q6ZUA9 1318 aa12.11□□□□□ -0.47
HDAC3-208ENST00000476739 SCN4AP35499 1836 aa12.1□□□□□ -0.47
HDAC3-208ENST00000476739 EPS15P42566 896 aa12.1□□□□□ -0.47
HDAC3-208ENST00000476739 METTL24Q5JXM2 366 aa12.1□□□□□ -0.47
HDAC3-208ENST00000476739 TAF1DQ9H5J8 278 aaPredicted RBP12.1□□□□□ -0.47
HDAC3-208ENST00000476739 COPRSQ9NQ92 184 aa12.1□□□□□ -0.47
HDAC3-208ENST00000476739 ZNF646O15015 1829 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms