RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 SF3B3Q15393 1217 aaKnown RBP24.18■■□□□ 1.46
SHH-205ENST00000472308 SULF1Q8IWU6 871 aa24.18■■□□□ 1.46
SHH-205ENST00000472308 MAPK8IP3Q9UPT6 1336 aa24.17■■□□□ 1.46
SHH-205ENST00000472308 VIL1P09327 827 aaKnown RBP24.17■■□□□ 1.46
SHH-205ENST00000472308 TBC1D16Q8TBP0 767 aa24.17■■□□□ 1.46
SHH-205ENST00000472308 FAM89AQ96GI7 184 aa24.16■■□□□ 1.46
SHH-205ENST00000472308 BABAM1Q9NWV8 329 aa24.16■■□□□ 1.46
SHH-205ENST00000472308 KRT24Q2M2I5 525 aa24.15■■□□□ 1.46
SHH-205ENST00000472308 PAPPA2Q9BXP8 1791 aa24.14■■□□□ 1.46
SHH-205ENST00000472308 ZNF609O15014 1411 aa24.14■■□□□ 1.45
SHH-205ENST00000472308 EYA3Q99504 573 aa24.14■■□□□ 1.45
SHH-205ENST00000472308 ISCA1Q9BUE6 129 aa24.14■■□□□ 1.45
SHH-205ENST00000472308 ZNF280AP59817 542 aaPredicted RBP24.13■■□□□ 1.45
SHH-205ENST00000472308 ANGEL2Q5VTE6 544 aaKnown RBP24.13■■□□□ 1.45
SHH-205ENST00000472308 REM2Q8IYK8 340 aaPredicted RBP24.13■■□□□ 1.45
SHH-205ENST00000472308 CHPF2Q9P2E5 772 aa24.13■■□□□ 1.45
SHH-205ENST00000472308 HTTP42858 3142 aa24.12■■□□□ 1.45
SHH-205ENST00000472308 RIPK4P57078 832 aa24.12■■□□□ 1.45
SHH-205ENST00000472308 MKI67P46013 3256 aaKnown RBP24.12■■□□□ 1.45
SHH-205ENST00000472308 SCARF1Q14162 830 aa24.11■■□□□ 1.45
SHH-205ENST00000472308 PLBD2Q8NHP8 589 aa24.11■■□□□ 1.45
SHH-205ENST00000472308 PNNQ9H307 717 aaKnown RBP24.11■■□□□ 1.45
SHH-205ENST00000472308 ATP5J2-PTCD1G3V325 749 aa24.1■■□□□ 1.45
SHH-205ENST00000472308 FKBP1BP68106 108 aa24.1■■□□□ 1.45
SHH-205ENST00000472308 RTL5Q5HYW3 569 aaPredicted RBP24.1■■□□□ 1.45
SHH-205ENST00000472308 MOB2Q70IA6 237 aa24.1■■□□□ 1.45
SHH-205ENST00000472308 ZNF296Q8WUU4 475 aaPredicted RBP24.1■■□□□ 1.45
SHH-205ENST00000472308 PODXL2Q9NZ53 605 aa24.1■■□□□ 1.45
SHH-205ENST00000472308 RPS8P62241 208 aaKnown RBP24.09■■□□□ 1.45
SHH-205ENST00000472308 PKN2Q16513 984 aaKnown RBP24.09■■□□□ 1.45
SHH-205ENST00000472308 ZC3H12CQ9C0D7 883 aaKnown RBP24.09■■□□□ 1.45
SHH-205ENST00000472308 TBC1D8O95759 1140 aa24.08■■□□□ 1.45
SHH-205ENST00000472308 RSBN1LQ6PCB5 846 aaPredicted RBP24.08■■□□□ 1.45
SHH-205ENST00000472308 GMLQ99445 158 aa24.08■■□□□ 1.45
SHH-205ENST00000472308 SCAF8Q9UPN6 1271 aaKnown RBP24.08■■□□□ 1.45
SHH-205ENST00000472308 PSME4Q14997 1843 aa24.07■■□□□ 1.44
SHH-205ENST00000472308 IRS4O14654 1257 aaPredicted RBP24.07■■□□□ 1.44
SHH-205ENST00000472308 UFL1O94874 794 aa24.07■■□□□ 1.44
SHH-205ENST00000472308 ANKRD13DQ6ZTN6 518 aa24.07■■□□□ 1.44
SHH-205ENST00000472308 AGBL3Q8NEM8 1001 aa24.07■■□□□ 1.44
SHH-205ENST00000472308 TMPOP42166 694 aaKnown RBP24.06■■□□□ 1.44
SHH-205ENST00000472308 SEC31BQ9NQW1 1179 aa24.06■■□□□ 1.44
SHH-205ENST00000472308 HDAC9Q9UKV0 1011 aa24.06■■□□□ 1.44
SHH-205ENST00000472308 PITPNM2Q9BZ72 1349 aa24.06■■□□□ 1.44
SHH-205ENST00000472308 CHL1O00533 1208 aa24.05■■□□□ 1.44
SHH-205ENST00000472308 MYOZ2Q9NPC6 264 aa24.05■■□□□ 1.44
SHH-205ENST00000472308 UBE2Q2LH0YL09 131 aa24.04■■□□□ 1.44
SHH-205ENST00000472308 TRIM28Q13263 835 aaKnown RBP24.04■■□□□ 1.44
SHH-205ENST00000472308 HDGFL1Q5TGJ6 251 aa24.04■■□□□ 1.44
SHH-205ENST00000472308 GGA1Q9UJY5 639 aa24.04■■□□□ 1.44
SHH-205ENST00000472308 USP17L8P0C7I0 530 aa24.03■■□□□ 1.44
SHH-205ENST00000472308 LMOD3Q0VAK6 560 aa24.03■■□□□ 1.44
SHH-205ENST00000472308 PRAMEF18Q5VWM3 479 aa24.03■■□□□ 1.44
SHH-205ENST00000472308 ANKIB1Q9P2G1 1089 aa24.03■■□□□ 1.44
SHH-205ENST00000472308 CENPFP49454 3210 aa24.02■■□□□ 1.44
SHH-205ENST00000472308 GPR25O00155 361 aa24.02■■□□□ 1.44
SHH-205ENST00000472308 TM4SF4P48230 202 aa24.02■■□□□ 1.44
SHH-205ENST00000472308 NOM1Q5C9Z4 860 aaKnown RBP24.02■■□□□ 1.44
SHH-205ENST00000472308 G3V3G9 751 aa24.01■■□□□ 1.43
SHH-205ENST00000472308 DCAF8Q5TAQ9 597 aa24.01■■□□□ 1.43
SHH-205ENST00000472308 FBXO46Q6PJ61 603 aaPredicted RBP24.01■■□□□ 1.43
SHH-205ENST00000472308 DBF4Q9UBU7 674 aaPredicted RBP24.01■■□□□ 1.43
SHH-205ENST00000472308 BRCA2P51587 3418 aa24.01■■□□□ 1.43
SHH-205ENST00000472308 R3HDMLQ9H3Y0 253 aa24■■□□□ 1.43
SHH-205ENST00000472308 HOXB7P09629 217 aa23.99■■□□□ 1.43
SHH-205ENST00000472308 NBPF9Q3BBW0 867 aa23.99■■□□□ 1.43
SHH-205ENST00000472308 ZBTB38Q8NAP3 1195 aaPredicted RBP23.99■■□□□ 1.43
SHH-205ENST00000472308 ZNF646O15015 1829 aaPredicted RBP23.98■■□□□ 1.43
SHH-205ENST00000472308 MKRN3Q13064 507 aaKnown RBP23.98■■□□□ 1.43
SHH-205ENST00000472308 USP17L3A6NCW0 530 aa23.97■■□□□ 1.43
SHH-205ENST00000472308 USP17L4A6NCW7 530 aa23.97■■□□□ 1.43
SHH-205ENST00000472308 WTIPA6NIX2 430 aaPredicted RBP23.97■■□□□ 1.43
SHH-205ENST00000472308 USP17L1Q7RTZ2 530 aa23.97■■□□□ 1.43
SHH-205ENST00000472308 CFHR5Q9BXR6 569 aa23.97■■□□□ 1.43
SHH-205ENST00000472308 HYPKQ9NX55 129 aa23.97■■□□□ 1.43
SHH-205ENST00000472308 TRIM35Q9UPQ4 493 aa23.97■■□□□ 1.43
SHH-205ENST00000472308 LAS1LQ9Y4W2 734 aaKnown RBP23.97■■□□□ 1.43
SHH-205ENST00000472308 XDHP47989 1333 aa23.96■■□□□ 1.43
SHH-205ENST00000472308 PODNQ7Z5L7 613 aa23.96■■□□□ 1.43
SHH-205ENST00000472308 NEUROD2Q15784 382 aa23.95■■□□□ 1.42
SHH-205ENST00000472308 CCDC152Q4G0S7 254 aa23.95■■□□□ 1.42
SHH-205ENST00000472308 CCDC85AQ96PX6 553 aaPredicted RBP23.95■■□□□ 1.42
SHH-205ENST00000472308 MXD3Q9BW11 206 aa23.95■■□□□ 1.42
SHH-205ENST00000472308 FKTNO75072 461 aa23.94■■□□□ 1.42
SHH-205ENST00000472308 TTLL12Q14166 644 aaPredicted RBP23.94■■□□□ 1.42
SHH-205ENST00000472308 GCC1Q96CN9 775 aa23.94■■□□□ 1.42
SHH-205ENST00000472308 WNT10BO00744 389 aa23.93■■□□□ 1.42
SHH-205ENST00000472308 PTPN12Q05209 780 aaKnown RBP23.93■■□□□ 1.42
SHH-205ENST00000472308 SREBF2Q12772 1141 aa23.93■■□□□ 1.42
SHH-205ENST00000472308 DACT2Q5SW24 774 aa23.93■■□□□ 1.42
SHH-205ENST00000472308 CCDC146Q8IYE0 955 aa23.93■■□□□ 1.42
SHH-205ENST00000472308 ATP2B4P23634 1241 aa23.92■■□□□ 1.42
SHH-205ENST00000472308 DUSP27Q5VZP5 1158 aa23.92■■□□□ 1.42
SHH-205ENST00000472308 RIC3Q7Z5B4 369 aa23.92■■□□□ 1.42
SHH-205ENST00000472308 JARID2Q92833 1246 aaPredicted RBP23.92■■□□□ 1.42
SHH-205ENST00000472308 MED23Q9ULK4 1368 aa23.91■■□□□ 1.42
SHH-205ENST00000472308 PDE8AO60658 829 aa23.91■■□□□ 1.42
SHH-205ENST00000472308 PCCAP05165 728 aaPredicted RBP23.91■■□□□ 1.42
SHH-205ENST00000472308 HABP4Q5JVS0 413 aaKnown RBP23.91■■□□□ 1.42
SHH-205ENST00000472308 MYD88Q99836 296 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms