RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, human

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSR4-208	ENST00000471880	MPHOSPH8	Q99549	860 aa		18.73	■□□□□ 0.59
SSR4-208	ENST00000471880	TAF1D	Q9H5J8	278 aa	Predicted RBP	18.73	■□□□□ 0.59
SSR4-208	ENST00000471880	DBNDD1	Q9H9R9	158 aa		18.73	■□□□□ 0.59
SSR4-208	ENST00000471880	POLL	Q9UGP5	575 aa		18.73	■□□□□ 0.59
SSR4-208	ENST00000471880	ALDH1L1	O75891	902 aa		18.72	■□□□□ 0.59
SSR4-208	ENST00000471880	EPHX2	P34913	555 aa		18.72	■□□□□ 0.59
SSR4-208	ENST00000471880	DOK7	Q18PE1	504 aa		18.72	■□□□□ 0.59
SSR4-208	ENST00000471880	ALDH1L2	Q3SY69	923 aa		18.72	■□□□□ 0.59
SSR4-208	ENST00000471880	TAF7L	Q5H9L4	462 aa		18.72	■□□□□ 0.59
SSR4-208	ENST00000471880	TBC1D16	Q8TBP0	767 aa		18.72	■□□□□ 0.59
SSR4-208	ENST00000471880	ZC3H12C	Q9C0D7	883 aa	Known RBP	18.72	■□□□□ 0.59
SSR4-208	ENST00000471880	PTPRC	P08575	1304 aa		18.72	■□□□□ 0.59
SSR4-208	ENST00000471880	ANKRD18B	A2A2Z9	1011 aa		18.71	■□□□□ 0.59
SSR4-208	ENST00000471880	CASP7	P55210	303 aa		18.71	■□□□□ 0.59
SSR4-208	ENST00000471880	CIAPIN1	Q6FI81	312 aa		18.71	■□□□□ 0.59
SSR4-208	ENST00000471880	DNAJC5G	Q8N7S2	189 aa		18.71	■□□□□ 0.59
SSR4-208	ENST00000471880	PSME4	Q14997	1843 aa		18.71	■□□□□ 0.59
SSR4-208	ENST00000471880	ZNF646	O15015	1829 aa	Predicted RBP	18.7	■□□□□ 0.58
SSR4-208	ENST00000471880	APLP1	P51693	650 aa		18.7	■□□□□ 0.58
SSR4-208	ENST00000471880	CXCL9	Q07325	125 aa		18.7	■□□□□ 0.58
SSR4-208	ENST00000471880	IFIT5	Q13325	482 aa	Known RBP	18.7	■□□□□ 0.58
SSR4-208	ENST00000471880	TRMT2A	Q8IZ69	625 aa	Known RBP	18.7	■□□□□ 0.58
SSR4-208	ENST00000471880	PLA2G12B	Q9BX93	195 aa		18.7	■□□□□ 0.58
SSR4-208	ENST00000471880	XDH	P47989	1333 aa		18.7	■□□□□ 0.58
SSR4-208	ENST00000471880	YDJC	A8MPS7	323 aa		18.69	■□□□□ 0.58
SSR4-208	ENST00000471880	ECE2	O60344	883 aa		18.69	■□□□□ 0.58
SSR4-208	ENST00000471880	SCNN1D	P51172	638 aa		18.69	■□□□□ 0.58
SSR4-208	ENST00000471880	TNIP1	Q15025	636 aa		18.69	■□□□□ 0.58
SSR4-208	ENST00000471880	CHADL	Q6NUI6	762 aa		18.69	■□□□□ 0.58
SSR4-208	ENST00000471880	LMBR1L	Q6UX01	489 aa		18.69	■□□□□ 0.58
SSR4-208	ENST00000471880	BSDC1	Q9NW68	430 aa	Predicted RBP	18.69	■□□□□ 0.58
SSR4-208	ENST00000471880	RTL9	Q8NET4	1388 aa		18.68	■□□□□ 0.58
SSR4-208	ENST00000471880	WTIP	A6NIX2	430 aa	Predicted RBP	18.68	■□□□□ 0.58
SSR4-208	ENST00000471880	CT47B1	P0C2W7	299 aa	Predicted RBP	18.68	■□□□□ 0.58
SSR4-208	ENST00000471880	KCNJ4	P48050	445 aa		18.68	■□□□□ 0.58
SSR4-208	ENST00000471880	CCDC57	Q2TAC2	916 aa		18.68	■□□□□ 0.58
SSR4-208	ENST00000471880	PODXL2	Q9NZ53	605 aa		18.68	■□□□□ 0.58
SSR4-208	ENST00000471880	NOB1	Q9ULX3	412 aa	Known RBP	18.68	■□□□□ 0.58
SSR4-208	ENST00000471880	POLR2A	P24928	1970 aa	Known RBP	18.68	■□□□□ 0.58
SSR4-208	ENST00000471880	ATP2B4	P23634	1241 aa		18.67	■□□□□ 0.58
SSR4-208	ENST00000471880	EPS15	P42566	896 aa		18.67	■□□□□ 0.58
SSR4-208	ENST00000471880	GMPS	P49915	693 aa	Predicted RBP	18.67	■□□□□ 0.58
SSR4-208	ENST00000471880	FOXO4	P98177	505 aa		18.67	■□□□□ 0.58
SSR4-208	ENST00000471880	EPHA10	Q5JZY3	1008 aa		18.67	■□□□□ 0.58
SSR4-208	ENST00000471880	PNMA8A	Q86V59	439 aa	Predicted RBP	18.67	■□□□□ 0.58
SSR4-208	ENST00000471880	LDHD	Q86WU2	507 aa		18.67	■□□□□ 0.58
SSR4-208	ENST00000471880	MINPP1	Q9UNW1	487 aa		18.67	■□□□□ 0.58
SSR4-208	ENST00000471880	CSF1R	P07333	972 aa		18.66	■□□□□ 0.58
SSR4-208	ENST00000471880	NBPF7	P0C2Y1	421 aa	Predicted RBP	18.66	■□□□□ 0.58
SSR4-208	ENST00000471880	FBXW7	Q969H0	707 aa		18.66	■□□□□ 0.58
SSR4-208	ENST00000471880	SUCLG2	Q96I99	432 aa		18.66	■□□□□ 0.58
SSR4-208	ENST00000471880	PLIN1	O60240	522 aa		18.65	■□□□□ 0.58
SSR4-208	ENST00000471880	CCT4	P50991	539 aa	Known RBP	18.65	■□□□□ 0.58
SSR4-208	ENST00000471880	KCNQ5	Q9NR82	932 aa		18.65	■□□□□ 0.58
SSR4-208	ENST00000471880	CNNM1	Q9NRU3	951 aa		18.65	■□□□□ 0.58
SSR4-208	ENST00000471880	ZBTB12	Q9Y330	459 aa	Predicted RBP	18.65	■□□□□ 0.58
SSR4-208	ENST00000471880	SHTN1	A0MZ66	631 aa		18.64	■□□□□ 0.57
SSR4-208	ENST00000471880	PSMD14	O00487	310 aa		18.64	■□□□□ 0.57
SSR4-208	ENST00000471880	MAP1S	Q66K74	1059 aa	Predicted RBP	18.64	■□□□□ 0.57
SSR4-208	ENST00000471880	FRAT1	Q92837	279 aa	Predicted RBP	18.64	■□□□□ 0.57
SSR4-208	ENST00000471880	ZNF594	Q96JF6	807 aa	Predicted RBP	18.64	■□□□□ 0.57
SSR4-208	ENST00000471880	ANKRD2	Q9GZV1	360 aa		18.64	■□□□□ 0.57
SSR4-208	ENST00000471880	GPRC5D	Q9NZD1	345 aa		18.64	■□□□□ 0.57
SSR4-208	ENST00000471880	TRPM7	Q96QT4	1865 aa		18.64	■□□□□ 0.57
SSR4-208	ENST00000471880	RARS	P54136	660 aa	Known RBP	18.63	■□□□□ 0.57
SSR4-208	ENST00000471880	CHRND	Q07001	517 aa		18.63	■□□□□ 0.57
SSR4-208	ENST00000471880	HELB	Q8NG08	1087 aa	Predicted RBP	18.63	■□□□□ 0.57
SSR4-208	ENST00000471880	API5	Q9BZZ5	524 aa	Known RBP	18.63	■□□□□ 0.57
SSR4-208	ENST00000471880	ITGBL1	O95965	494 aa	Predicted RBP	18.62	■□□□□ 0.57
SSR4-208	ENST00000471880	LDHAL6A	Q6ZMR3	332 aa		18.62	■□□□□ 0.57
SSR4-208	ENST00000471880	BICC1	Q9H694	974 aa	Known RBP	18.62	■□□□□ 0.57
SSR4-208	ENST00000471880	ADARB2	Q9NS39	739 aa	Known RBP	18.62	■□□□□ 0.57
SSR4-208	ENST00000471880	CNOT7	Q9UIV1	285 aa	Known RBP	18.62	■□□□□ 0.57
SSR4-208	ENST00000471880	KIF16B	Q96L93	1317 aa		18.62	■□□□□ 0.57
SSR4-208	ENST00000471880	PASK	Q96RG2	1323 aa		18.62	■□□□□ 0.57
SSR4-208	ENST00000471880	ZNF804B	A4D1E1	1349 aa		18.61	■□□□□ 0.57
SSR4-208	ENST00000471880		H7C1D1	291 aa		18.61	■□□□□ 0.57
SSR4-208	ENST00000471880	TAF5L	O75529	589 aa		18.61	■□□□□ 0.57
SSR4-208	ENST00000471880	FMR1	Q06787	632 aa	Known RBP eCLIP	18.61	■□□□□ 0.57
SSR4-208	ENST00000471880	USP50	Q70EL3	339 aa	Predicted RBP	18.61	■□□□□ 0.57
SSR4-208	ENST00000471880	MICALL2	Q8IY33	904 aa		18.61	■□□□□ 0.57
SSR4-208	ENST00000471880	LEMD3	Q9Y2U8	911 aa		18.61	■□□□□ 0.57
SSR4-208	ENST00000471880	RBM26	Q5T8P6	1007 aa	Known RBP	18.6	■□□□□ 0.57
SSR4-208	ENST00000471880	CNTROB	Q8N137	903 aa		18.6	■□□□□ 0.57
SSR4-208	ENST00000471880	MED23	Q9ULK4	1368 aa		18.59	■□□□□ 0.57
SSR4-208	ENST00000471880	KLRG1	Q96E93	195 aa		18.59	■□□□□ 0.57
SSR4-208	ENST00000471880	PCNT	O95613	3336 aa		18.59	■□□□□ 0.57
SSR4-208	ENST00000471880	SNAP23	O00161	211 aa		18.58	■□□□□ 0.56
SSR4-208	ENST00000471880	IPO8	O15397	1037 aa	Known RBP	18.58	■□□□□ 0.56
SSR4-208	ENST00000471880	BCAR3	O75815	825 aa		18.58	■□□□□ 0.56
SSR4-208	ENST00000471880	UBTFL1	P0CB47	393 aa	Predicted RBP	18.58	■□□□□ 0.56
SSR4-208	ENST00000471880	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	18.58	■□□□□ 0.56
SSR4-208	ENST00000471880	USP44	Q9H0E7	712 aa		18.58	■□□□□ 0.56
SSR4-208	ENST00000471880	UTY	O14607	1347 aa		18.57	■□□□□ 0.56
SSR4-208	ENST00000471880	ZBED9	Q6R2W3	1325 aa		18.57	■□□□□ 0.56
SSR4-208	ENST00000471880	KLRK1	P26718	216 aa		18.57	■□□□□ 0.56
SSR4-208	ENST00000471880	HIRA	P54198	1017 aa	Predicted RBP	18.57	■□□□□ 0.56
SSR4-208	ENST00000471880	TRPM4	Q8TD43	1214 aa		18.57	■□□□□ 0.56
SSR4-208	ENST00000471880	KAZALD1	Q96I82	304 aa		18.57	■□□□□ 0.56
SSR4-208	ENST00000471880	USP17L3	A6NCW0	530 aa		18.56	■□□□□ 0.56

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms