RNA–Protein interactions for RNA: ENST00000469694.5

GPC1-208, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 2,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-208ENST00000469694 TEX13AQ9BXU3 409 aaPredicted RBP16.49■□□□□ 0.23
GPC1-208ENST00000469694 COPRSQ9NQ92 184 aa16.49■□□□□ 0.23
GPC1-208ENST00000469694 GLRX3O76003 335 aaKnown RBP16.48■□□□□ 0.23
GPC1-208ENST00000469694 TPM3P06753 285 aa16.48■□□□□ 0.23
GPC1-208ENST00000469694 FAM182BQ5T319 152 aa16.48■□□□□ 0.23
GPC1-208ENST00000469694 BOLA2Q9H3K6 86 aa16.48■□□□□ 0.23
GPC1-208ENST00000469694 TUBGCP6Q96RT7 1819 aa16.48■□□□□ 0.23
GPC1-208ENST00000469694 GABPB1Q06547 395 aaPredicted RBP16.48■□□□□ 0.23
GPC1-208ENST00000469694 TMEM87AQ8NBN3 555 aa16.48■□□□□ 0.23
GPC1-208ENST00000469694 EDC3Q96F86 508 aaKnown RBP16.48■□□□□ 0.23
GPC1-208ENST00000469694 UPF3BQ9BZI7 483 aaKnown RBP16.48■□□□□ 0.23
GPC1-208ENST00000469694 THRAP3Q9Y2W1 955 aaKnown RBP16.48■□□□□ 0.23
GPC1-208ENST00000469694 SLIT2O94813 1529 aa16.48■□□□□ 0.23
GPC1-208ENST00000469694 PTF1AQ7RTS3 328 aa16.48■□□□□ 0.23
GPC1-208ENST00000469694 ISCA1Q9BUE6 129 aa16.48■□□□□ 0.23
GPC1-208ENST00000469694 NRAPQ86VF7 1730 aa16.47■□□□□ 0.23
GPC1-208ENST00000469694 TTC41PQ6P2S7 1318 aa16.47■□□□□ 0.23
GPC1-208ENST00000469694 DTNBO60941 627 aa16.47■□□□□ 0.23
GPC1-208ENST00000469694 TPRNQ4KMQ1 711 aa16.47■□□□□ 0.23
GPC1-208ENST00000469694 CNTROBQ8N137 903 aa16.47■□□□□ 0.23
GPC1-208ENST00000469694 NCBP1Q09161 790 aaKnown RBP16.47■□□□□ 0.23
GPC1-208ENST00000469694 CDCA7Q9BWT1 371 aaPredicted RBP16.47■□□□□ 0.23
GPC1-208ENST00000469694 EP400Q96L91 3159 aa16.47■□□□□ 0.23
GPC1-208ENST00000469694 USP42Q9H9J4 1324 aaKnown RBP16.46■□□□□ 0.23
GPC1-208ENST00000469694 ATP6V1AP38606 617 aa16.46■□□□□ 0.23
GPC1-208ENST00000469694 SYCP1Q15431 976 aa16.46■□□□□ 0.23
GPC1-208ENST00000469694 CTNNA3Q9UI47 895 aa16.46■□□□□ 0.23
GPC1-208ENST00000469694 DBNLQ9UJU6 430 aaKnown RBP16.46■□□□□ 0.23
GPC1-208ENST00000469694 NUP188Q5SRE5 1749 aa16.46■□□□□ 0.23
GPC1-208ENST00000469694 DOT1LQ8TEK3 1739 aa16.46■□□□□ 0.23
GPC1-208ENST00000469694 WDR33Q9C0J8 1336 aaKnown RBP16.46■□□□□ 0.23
GPC1-208ENST00000469694 LRRC24Q50LG9 513 aa16.46■□□□□ 0.23
GPC1-208ENST00000469694 NAP1L2Q9ULW6 460 aaPredicted RBP16.46■□□□□ 0.23
GPC1-208ENST00000469694 MAP3K15Q6ZN16 1313 aa16.46■□□□□ 0.22
GPC1-208ENST00000469694 AP5Z1O43299 807 aa16.45■□□□□ 0.22
GPC1-208ENST00000469694 PUS3Q9BZE2 481 aaKnown RBP16.45■□□□□ 0.22
GPC1-208ENST00000469694 ITPK1Q13572 414 aa16.45■□□□□ 0.22
GPC1-208ENST00000469694 GPATCH3Q96I76 525 aa16.45■□□□□ 0.22
GPC1-208ENST00000469694 SLFN14P0C7P3 912 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 TNNI3KQ59H18 835 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 DBNDD2Q9BQY9 259 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 LARP6Q9BRS8 491 aaKnown RBP16.44■□□□□ 0.22
GPC1-208ENST00000469694 FUCA2Q9BTY2 467 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 FPGT-TNNI3KV9GXZ4 949 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 BCL9LQ86UU0 1499 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 PLCB2Q00722 1185 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 GIGYF2Q6Y7W6 1299 aaKnown RBP16.44■□□□□ 0.22
GPC1-208ENST00000469694 KLHL34Q8N239 644 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 LOC102724428A0A0B4J2F2 783 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 CHGBP05060 677 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 SIK1P57059 783 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 BARGINQ6ZT62 677 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 SMIM5Q71RC9 77 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 ATG9AQ7Z3C6 839 aa16.44■□□□□ 0.22
GPC1-208ENST00000469694 DZIP3Q86Y13 1208 aaKnown RBP16.44■□□□□ 0.22
GPC1-208ENST00000469694 DDX41Q9UJV9 622 aaKnown RBP16.44■□□□□ 0.22
GPC1-208ENST00000469694 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.43■□□□□ 0.22
GPC1-208ENST00000469694 TIMM10P62072 90 aa16.43■□□□□ 0.22
GPC1-208ENST00000469694 TJP1Q07157 1748 aa16.43■□□□□ 0.22
GPC1-208ENST00000469694 TCHHQ07283 1943 aa16.43■□□□□ 0.22
GPC1-208ENST00000469694 WNK3Q9BYP7 1800 aa16.43■□□□□ 0.22
GPC1-208ENST00000469694 SGSM2O43147 1006 aa16.43■□□□□ 0.22
GPC1-208ENST00000469694 ANAPC15P60006 121 aa16.43■□□□□ 0.22
GPC1-208ENST00000469694 FAM227BQ96M60 508 aa16.43■□□□□ 0.22
GPC1-208ENST00000469694 GOLGA6L6A8MZA4 724 aa16.42■□□□□ 0.22
GPC1-208ENST00000469694 CRKLP46109 303 aaKnown RBP16.42■□□□□ 0.22
GPC1-208ENST00000469694 UBE2HP62256 183 aa16.42■□□□□ 0.22
GPC1-208ENST00000469694 INTS5Q6P9B9 1019 aaKnown RBP16.42■□□□□ 0.22
GPC1-208ENST00000469694 NLRP10Q86W26 655 aa16.42■□□□□ 0.22
GPC1-208ENST00000469694 NEUROD6Q96NK8 337 aa16.42■□□□□ 0.22
GPC1-208ENST00000469694 COL15A1P39059 1388 aa16.42■□□□□ 0.22
GPC1-208ENST00000469694 RPAP1Q9BWH6 1393 aaPredicted RBP16.42■□□□□ 0.22
GPC1-208ENST00000469694 ZBTB22O15209 634 aa16.42■□□□□ 0.22
GPC1-208ENST00000469694 MORC2Q9Y6X9 1032 aaPredicted RBP16.42■□□□□ 0.22
GPC1-208ENST00000469694 MCCP23508 829 aa16.41■□□□□ 0.22
GPC1-208ENST00000469694 CNPY2Q9Y2B0 182 aa16.41■□□□□ 0.22
GPC1-208ENST00000469694 JCADQ9P266 1359 aa16.41■□□□□ 0.22
GPC1-208ENST00000469694 LRP6O75581 1613 aa16.41■□□□□ 0.22
GPC1-208ENST00000469694 SPC24Q8NBT2 197 aa16.41■□□□□ 0.22
GPC1-208ENST00000469694 USP21Q9UK80 565 aa16.41■□□□□ 0.22
GPC1-208ENST00000469694 PALLDQ8WX93 1383 aa16.41■□□□□ 0.22
GPC1-208ENST00000469694 ZBTB38Q8NAP3 1195 aaPredicted RBP16.4■□□□□ 0.22
GPC1-208ENST00000469694 DNAJC2Q99543 621 aaKnown RBP16.4■□□□□ 0.22
GPC1-208ENST00000469694 IPO4Q8TEX9 1081 aaKnown RBP16.4■□□□□ 0.22
GPC1-208ENST00000469694 EVI5LQ96CN4 794 aa16.4■□□□□ 0.22
GPC1-208ENST00000469694 IL17RAQ96F46 866 aa16.4■□□□□ 0.22
GPC1-208ENST00000469694 TRMT112Q9UI30 125 aaKnown RBP16.4■□□□□ 0.22
GPC1-208ENST00000469694 UBN2Q6ZU65 1347 aa16.4■□□□□ 0.22
GPC1-208ENST00000469694 SMTNL1A8MU46 457 aa16.4■□□□□ 0.22
GPC1-208ENST00000469694 PCCAP05165 728 aaPredicted RBP16.4■□□□□ 0.22
GPC1-208ENST00000469694 IL6STP40189 918 aaPredicted RBP16.4■□□□□ 0.22
GPC1-208ENST00000469694 PTH1RQ03431 593 aa16.4■□□□□ 0.22
GPC1-208ENST00000469694 TRIM28Q13263 835 aaKnown RBP16.4■□□□□ 0.22
GPC1-208ENST00000469694 CCDC57Q2TAC2 916 aa16.4■□□□□ 0.22
GPC1-208ENST00000469694 GIMAP6Q6P9H5 292 aa16.4■□□□□ 0.22
GPC1-208ENST00000469694 FSD1Q9BTV5 496 aa16.4■□□□□ 0.22
GPC1-208ENST00000469694 VPS72Q15906 364 aa16.39■□□□□ 0.21
GPC1-208ENST00000469694 LSG1Q9H089 658 aaKnown RBP16.39■□□□□ 0.21
GPC1-208ENST00000469694 CCDC87Q9NVE4 849 aa16.39■□□□□ 0.21
GPC1-208ENST00000469694 EIF5P55010 431 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms