RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 CCDC158Q5M9N0 1113 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 CREB3L3Q68CJ9 461 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 RUFY3Q7L099 469 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 FAM227BQ96M60 508 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 PAG1Q9NWQ8 432 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 TRMT112Q9UI30 125 aaKnown RBP9.14□□□□□ -0.95
COL6A3-208ENST00000468792 ZNF652Q9Y2D9 606 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 RBM8AQ9Y5S9 174 aaKnown RBP9.14□□□□□ -0.95
COL6A3-208ENST00000468792 CYP46A1Q9Y6A2 500 aa9.14□□□□□ -0.95
COL6A3-208ENST00000468792 THSD7AQ9UPZ6 1657 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 UBN2Q6ZU65 1347 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 MROH5Q6ZUA9 1318 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 NUTM2BA6NNL0 878 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-208ENST00000468792 NUTM2EB1AL46 878 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-208ENST00000468792 SLC27A2O14975 620 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 TRAK2O60296 914 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 BAG4O95429 457 aaKnown RBP9.13□□□□□ -0.95
COL6A3-208ENST00000468792 BRD1O95696 1058 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 TIMM10P62072 90 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 PIP4K2BP78356 416 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 ZMYM1Q5SVZ6 1142 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 NUTM2AQ8IVF1 878 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-208ENST00000468792 VGLL2Q8N8G2 317 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 NGLY1Q96IV0 654 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 DSCC1Q9BVC3 393 aa9.13□□□□□ -0.95
COL6A3-208ENST00000468792 UTP14AQ9BVJ6 771 aaKnown RBP9.13□□□□□ -0.95
COL6A3-208ENST00000468792 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-208ENST00000468792 PDE8BO95263 885 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 HMGB1P09429 215 aaKnown RBP9.12□□□□□ -0.95
COL6A3-208ENST00000468792 IFIT1P09914 478 aaKnown RBP9.12□□□□□ -0.95
COL6A3-208ENST00000468792 ITGA6P23229 1130 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 HMGB2P26583 209 aaKnown RBP9.12□□□□□ -0.95
COL6A3-208ENST00000468792 ITPK1Q13572 414 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 TAF7LQ5H9L4 462 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 PRPF40BQ6NWY9 871 aaKnown RBP9.12□□□□□ -0.95
COL6A3-208ENST00000468792 LDHAL6AQ6ZMR3 332 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 KLHL34Q8N239 644 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 FBXL16Q8N461 479 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 XAGE2Q96GT9 111 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 ZNF594Q96JF6 807 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-208ENST00000468792 NEUROD6Q96NK8 337 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 PUS3Q9BZE2 481 aaKnown RBP9.12□□□□□ -0.95
COL6A3-208ENST00000468792 UPF3BQ9BZI7 483 aaKnown RBP9.12□□□□□ -0.95
COL6A3-208ENST00000468792 GREM2Q9H772 168 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 KAT6BQ8WYB5 2073 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 RIC1Q4ADV7 1423 aa9.12□□□□□ -0.95
COL6A3-208ENST00000468792 MYH14Q7Z406 1995 aaKnown RBP9.12□□□□□ -0.95
COL6A3-208ENST00000468792 RNF113AO15541 343 aaKnown RBP9.11□□□□□ -0.95
COL6A3-208ENST00000468792 CASTP20810 708 aaKnown RBP9.11□□□□□ -0.95
COL6A3-208ENST00000468792 FGFR2P21802 821 aa9.11□□□□□ -0.95
COL6A3-208ENST00000468792 AK2P54819 239 aa9.11□□□□□ -0.95
COL6A3-208ENST00000468792 TTF1Q15361 905 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-208ENST00000468792 SLC10A5Q5PT55 438 aa9.11□□□□□ -0.95
COL6A3-208ENST00000468792 ZNF589Q86UQ0 364 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-208ENST00000468792 ZGPATQ8N5A5 531 aaKnown RBP9.11□□□□□ -0.95
COL6A3-208ENST00000468792 JAKMIP1Q96N16 626 aaKnown RBP9.11□□□□□ -0.95
COL6A3-208ENST00000468792 PDRG1Q9NUG6 133 aa9.11□□□□□ -0.95
COL6A3-208ENST00000468792 TBC1D2BQ9UPU7 963 aa9.11□□□□□ -0.95
COL6A3-208ENST00000468792 ZDHHC9Q9Y397 364 aa9.11□□□□□ -0.95
COL6A3-208ENST00000468792 ZNF330Q9Y3S2 320 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-208ENST00000468792 CCDC9Q9Y3X0 531 aaKnown RBP9.11□□□□□ -0.95
COL6A3-208ENST00000468792 LAMB2P55268 1798 aa9.11□□□□□ -0.95
COL6A3-208ENST00000468792 BCORQ6W2J9 1755 aa9.11□□□□□ -0.95
COL6A3-208ENST00000468792 WDR33Q9C0J8 1336 aaKnown RBP9.1□□□□□ -0.95
COL6A3-208ENST00000468792 NTSR2O95665 410 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 UQCRFS1P1P0C7P4 283 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 RPS6KB1P23443 525 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 GPTP24298 496 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 ARID4AP29374 1257 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-208ENST00000468792 KCNJ4P48050 445 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 PUM3Q15397 648 aaKnown RBP9.1□□□□□ -0.95
COL6A3-208ENST00000468792 ATP2B3Q16720 1220 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 FAM98CQ17RN3 349 aaKnown RBP9.1□□□□□ -0.95
COL6A3-208ENST00000468792 KLHL40Q2TBA0 621 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 CCDC152Q4G0S7 254 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 METTL24Q5JXM2 366 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 SUSD4Q5VX71 490 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 ZSCAN25Q6NSZ9 544 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 BLOC1S2Q6QNY1 142 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 LPIN2Q92539 896 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 CHMP4CQ96CF2 233 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 ACSBG1Q96GR2 724 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 DNAJC2Q99543 621 aaKnown RBP9.1□□□□□ -0.95
COL6A3-208ENST00000468792 USP21Q9UK80 565 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 NHSQ6T4R5 1651 aa9.1□□□□□ -0.95
COL6A3-208ENST00000468792 ATRNO75882 1429 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 FSD2A1L4K1 749 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 GOLIM4O00461 696 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 IGSF3O75054 1194 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 DSG3P32926 999 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 SF3B3Q15393 1217 aaKnown RBP9.09□□□□□ -0.95
COL6A3-208ENST00000468792 ADCK5Q3MIX3 580 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 TTC39AQ5SRH9 613 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 L1TD1Q5T7N2 865 aaKnown RBP9.09□□□□□ -0.95
COL6A3-208ENST00000468792 GORABQ5T7V8 394 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 DDX46Q7L014 1031 aaKnown RBP9.09□□□□□ -0.95
COL6A3-208ENST00000468792 EDC3Q96F86 508 aaKnown RBP9.09□□□□□ -0.95
COL6A3-208ENST00000468792 C8orf37Q96NL8 207 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 ARXQ96QS3 562 aa9.09□□□□□ -0.95
COL6A3-208ENST00000468792 AGXT2Q9BYV1 514 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms