RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 LARGE2Q8N3Y3 721 aa14.65□□□□□ -0.06
CUX1-207ENST00000465461 KLHDC4Q8TBB5 520 aa14.65□□□□□ -0.06
CUX1-207ENST00000465461 MPHOSPH8Q99549 860 aa14.65□□□□□ -0.06
CUX1-207ENST00000465461 RTFDC1Q9BY42 306 aaPredicted RBP14.65□□□□□ -0.06
CUX1-207ENST00000465461 PUS3Q9BZE2 481 aaKnown RBP14.65□□□□□ -0.06
CUX1-207ENST00000465461 ANKIB1Q9P2G1 1089 aa14.65□□□□□ -0.06
CUX1-207ENST00000465461 TIAM2Q8IVF5 1701 aa14.65□□□□□ -0.06
CUX1-207ENST00000465461 GRIPAP1Q4V328 841 aa14.64□□□□□ -0.07
CUX1-207ENST00000465461 TAF7LQ5H9L4 462 aa14.64□□□□□ -0.07
CUX1-207ENST00000465461 ITPRIPQ8IWB1 547 aa14.64□□□□□ -0.07
CUX1-207ENST00000465461 HELBQ8NG08 1087 aaPredicted RBP14.64□□□□□ -0.07
CUX1-207ENST00000465461 TBC1D16Q8TBP0 767 aa14.64□□□□□ -0.07
CUX1-207ENST00000465461 DICER1Q9UPY3 1922 aaKnown RBP14.64□□□□□ -0.07
CUX1-207ENST00000465461 ZNF541Q9H0D2 1346 aa14.64□□□□□ -0.07
CUX1-207ENST00000465461 SNAP23O00161 211 aa14.63□□□□□ -0.07
CUX1-207ENST00000465461 TAF5LO75529 589 aa14.63□□□□□ -0.07
CUX1-207ENST00000465461 UFL1O94874 794 aa14.63□□□□□ -0.07
CUX1-207ENST00000465461 C20orf194Q5TEA3 1177 aa14.63□□□□□ -0.07
CUX1-207ENST00000465461 SUPT20HQ8NEM7 779 aa14.63□□□□□ -0.07
CUX1-207ENST00000465461 C1orf115Q9H7X2 142 aa14.63□□□□□ -0.07
CUX1-207ENST00000465461 DDNO94850 711 aaPredicted RBP14.62□□□□□ -0.07
CUX1-207ENST00000465461 CHRNDQ07001 517 aa14.62□□□□□ -0.07
CUX1-207ENST00000465461 LTBP1Q14766 1721 aa14.62□□□□□ -0.07
CUX1-207ENST00000465461 DOK7Q18PE1 504 aa14.62□□□□□ -0.07
CUX1-207ENST00000465461 WASHC4Q2M389 1173 aa14.62□□□□□ -0.07
CUX1-207ENST00000465461 LDHAL6AQ6ZMR3 332 aa14.62□□□□□ -0.07
CUX1-207ENST00000465461 JDP2Q8WYK2 163 aa14.62□□□□□ -0.07
CUX1-207ENST00000465461 GPBP1L1Q9HC44 474 aaPredicted RBP14.62□□□□□ -0.07
CUX1-207ENST00000465461 NMRK2Q9NPI5 230 aa14.62□□□□□ -0.07
CUX1-207ENST00000465461 PODXL2Q9NZ53 605 aa14.62□□□□□ -0.07
CUX1-207ENST00000465461 GGA1Q9UJY5 639 aa14.62□□□□□ -0.07
CUX1-207ENST00000465461 XDHP47989 1333 aa14.62□□□□□ -0.07
CUX1-207ENST00000465461 GNAI3P08754 354 aa14.61□□□□□ -0.07
CUX1-207ENST00000465461 RFX5P48382 616 aaPredicted RBP14.61□□□□□ -0.07
CUX1-207ENST00000465461 KIAA2012Q0VF49 1180 aa14.61□□□□□ -0.07
CUX1-207ENST00000465461 LRRC24Q50LG9 513 aa14.61□□□□□ -0.07
CUX1-207ENST00000465461 NIM1KQ8IY84 436 aa14.61□□□□□ -0.07
CUX1-207ENST00000465461 DBNDD1Q9H9R9 158 aa14.61□□□□□ -0.07
CUX1-207ENST00000465461 RRAGCQ9HB90 399 aa14.61□□□□□ -0.07
CUX1-207ENST00000465461 CNNM1Q9NRU3 951 aa14.61□□□□□ -0.07
CUX1-207ENST00000465461 COG6Q9Y2V7 657 aa14.61□□□□□ -0.07
CUX1-207ENST00000465461 GLTPD2A6NH11 291 aa14.6□□□□□ -0.07
CUX1-207ENST00000465461 FZD9O00144 591 aa14.6□□□□□ -0.07
CUX1-207ENST00000465461 ZBTB7BO15156 539 aaPredicted RBP14.6□□□□□ -0.07
CUX1-207ENST00000465461 ATP2B4P23634 1241 aa14.6□□□□□ -0.07
CUX1-207ENST00000465461 KLRK1P26718 216 aa14.6□□□□□ -0.07
CUX1-207ENST00000465461 KCNQ5Q9NR82 932 aa14.6□□□□□ -0.07
CUX1-207ENST00000465461 YDJCA8MPS7 323 aa14.59□□□□□ -0.07
CUX1-207ENST00000465461 GNAI2P04899 355 aa14.59□□□□□ -0.07
CUX1-207ENST00000465461 DPY19L2Q6NUT2 758 aa14.59□□□□□ -0.07
CUX1-207ENST00000465461 TXNRD3Q86VQ6 643 aa14.59□□□□□ -0.07
CUX1-207ENST00000465461 ZC3H12CQ9C0D7 883 aaKnown RBP14.59□□□□□ -0.07
CUX1-207ENST00000465461 PA2G4Q9UQ80 394 aaKnown RBP14.59□□□□□ -0.07
CUX1-207ENST00000465461 GJA3Q9Y6H8 435 aa14.59□□□□□ -0.07
CUX1-207ENST00000465461 RAD17O75943 681 aa14.58□□□□□ -0.08
CUX1-207ENST00000465461 EIF6P56537 245 aaKnown RBP14.58□□□□□ -0.08
CUX1-207ENST00000465461 PTPN12Q05209 780 aaKnown RBP14.58□□□□□ -0.08
CUX1-207ENST00000465461 EYA3Q99504 573 aa14.58□□□□□ -0.08
CUX1-207ENST00000465461 ANKRD2Q9GZV1 360 aa14.58□□□□□ -0.08
CUX1-207ENST00000465461 SIL1Q9H173 461 aa14.58□□□□□ -0.08
CUX1-207ENST00000465461 VPS33BQ9H267 617 aa14.58□□□□□ -0.08
CUX1-207ENST00000465461 ZNRF3Q9ULT6 936 aa14.58□□□□□ -0.08
CUX1-207ENST00000465461 RIPOR2Q9Y4F9 1068 aa14.58□□□□□ -0.08
CUX1-207ENST00000465461 ZNF804BA4D1E1 1349 aa14.58□□□□□ -0.08
CUX1-207ENST00000465461 KDM2BQ8NHM5 1336 aa14.58□□□□□ -0.08
CUX1-207ENST00000465461 ZC3H4Q9UPT8 1303 aaKnown RBP14.58□□□□□ -0.08
CUX1-207ENST00000465461 PNMA6EA0A0J9YXQ4 647 aa14.57□□□□□ -0.08
CUX1-207ENST00000465461 POTECB2RU33 542 aa14.57□□□□□ -0.08
CUX1-207ENST00000465461 ECE2O60344 883 aa14.57□□□□□ -0.08
CUX1-207ENST00000465461 KCNJ4P48050 445 aa14.57□□□□□ -0.08
CUX1-207ENST00000465461 CXCL9Q07325 125 aa14.57□□□□□ -0.08
CUX1-207ENST00000465461 MVPQ14764 893 aaKnown RBP14.57□□□□□ -0.08
CUX1-207ENST00000465461 HDAC5Q9UQL6 1122 aa14.57□□□□□ -0.08
CUX1-207ENST00000465461 A0A1B0GUL6 1792 aa14.56□□□□□ -0.08
CUX1-207ENST00000465461 G3V3G9 751 aa14.56□□□□□ -0.08
CUX1-207ENST00000465461 KIF3CO14782 793 aa14.56□□□□□ -0.08
CUX1-207ENST00000465461 SRGAP3O43295 1099 aa14.56□□□□□ -0.08
CUX1-207ENST00000465461 DCAF8Q5TAQ9 597 aa14.56□□□□□ -0.08
CUX1-207ENST00000465461 LEMD3Q9Y2U8 911 aa14.56□□□□□ -0.08
CUX1-207ENST00000465461 EYA2O00167 538 aa14.55□□□□□ -0.08
CUX1-207ENST00000465461 MS4A1P11836 297 aa14.55□□□□□ -0.08
CUX1-207ENST00000465461 METTL24Q5JXM2 366 aa14.55□□□□□ -0.08
CUX1-207ENST00000465461 ATG9AQ7Z3C6 839 aa14.55□□□□□ -0.08
CUX1-207ENST00000465461 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.55□□□□□ -0.08
CUX1-207ENST00000465461 RRP1P56182 461 aaKnown RBP14.54□□□□□ -0.08
CUX1-207ENST00000465461 CIAPIN1Q6FI81 312 aa14.54□□□□□ -0.08
CUX1-207ENST00000465461 ZBTB12Q9Y330 459 aaPredicted RBP14.54□□□□□ -0.08
CUX1-207ENST00000465461 MROH5Q6ZUA9 1318 aa14.54□□□□□ -0.08
CUX1-207ENST00000465461 MED23Q9ULK4 1368 aa14.53□□□□□ -0.08
CUX1-207ENST00000465461 IRS2Q9Y4H2 1338 aa14.53□□□□□ -0.08
CUX1-207ENST00000465461 PSMD14O00487 310 aa14.53□□□□□ -0.08
CUX1-207ENST00000465461 ATP8B2P98198 1209 aa14.53□□□□□ -0.08
CUX1-207ENST00000465461 MTX1Q13505 466 aa14.53□□□□□ -0.08
CUX1-207ENST00000465461 GPC2Q8N158 579 aa14.53□□□□□ -0.08
CUX1-207ENST00000465461 VGLL2Q8N8G2 317 aa14.53□□□□□ -0.08
CUX1-207ENST00000465461 WDR90Q96KV7 1748 aa14.52□□□□□ -0.08
CUX1-207ENST00000465461 SHTN1A0MZ66 631 aa14.52□□□□□ -0.09
CUX1-207ENST00000465461 PDE3AQ14432 1141 aa14.52□□□□□ -0.09
CUX1-207ENST00000465461 FBXW7Q969H0 707 aa14.52□□□□□ -0.09
CUX1-207ENST00000465461 MXD3Q9BW11 206 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms