RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 PRR29P0C7W0 189 aa16.47■□□□□ 0.23
COL28A1-206ENST00000465339 EIF6P56537 245 aaKnown RBP16.47■□□□□ 0.23
COL28A1-206ENST00000465339 GPSM2P81274 684 aa16.47■□□□□ 0.23
COL28A1-206ENST00000465339 FOXO4P98177 505 aa16.47■□□□□ 0.23
COL28A1-206ENST00000465339 NIM1KQ8IY84 436 aa16.47■□□□□ 0.23
COL28A1-206ENST00000465339 PIP4P2Q8N4L2 257 aa16.47■□□□□ 0.23
COL28A1-206ENST00000465339 BSDC1Q9NW68 430 aaPredicted RBP16.47■□□□□ 0.23
COL28A1-206ENST00000465339 PODXL2Q9NZ53 605 aa16.47■□□□□ 0.23
COL28A1-206ENST00000465339 KIAA2012Q0VF49 1180 aa16.46■□□□□ 0.23
COL28A1-206ENST00000465339 AOC3Q16853 763 aa16.46■□□□□ 0.23
COL28A1-206ENST00000465339 ARHGAP45Q92619 1136 aa16.46■□□□□ 0.23
COL28A1-206ENST00000465339 API5Q9BZZ5 524 aaKnown RBP16.46■□□□□ 0.23
COL28A1-206ENST00000465339 ANKIB1Q9P2G1 1089 aa16.46■□□□□ 0.23
COL28A1-206ENST00000465339 NOB1Q9ULX3 412 aaKnown RBP16.46■□□□□ 0.23
COL28A1-206ENST00000465339 UTYO14607 1347 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 SCN4AP35499 1836 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 C6orf229H3BNL8 230 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 ITGA6P23229 1130 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 IGHMBP2P38935 993 aaKnown RBP16.45■□□□□ 0.22
COL28A1-206ENST00000465339 FXR2P51116 673 aaKnown RBP eCLIP16.45■□□□□ 0.22
COL28A1-206ENST00000465339 WASHC4Q2M389 1173 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 POTEHQ6S545 545 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 GPC2Q8N158 579 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 EYA3Q99504 573 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 ZNRF3Q9ULT6 936 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 SPEF2Q9C093 1822 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 LTBP1Q14766 1721 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 KIF16BQ96L93 1317 aa16.45■□□□□ 0.22
COL28A1-206ENST00000465339 COL4A5P29400 1685 aa16.44■□□□□ 0.22
COL28A1-206ENST00000465339 DUOX1Q9NRD9 1551 aa16.44■□□□□ 0.22
COL28A1-206ENST00000465339 ANKRD18BA2A2Z9 1011 aa16.44■□□□□ 0.22
COL28A1-206ENST00000465339 IQCA1LA6NCM1 817 aa16.44■□□□□ 0.22
COL28A1-206ENST00000465339 POTECB2RU33 542 aa16.44■□□□□ 0.22
COL28A1-206ENST00000465339 IPO8O15397 1037 aaKnown RBP16.44■□□□□ 0.22
COL28A1-206ENST00000465339 CCT4P50991 539 aaKnown RBP16.44■□□□□ 0.22
COL28A1-206ENST00000465339 TBC1D16Q8TBP0 767 aa16.44■□□□□ 0.22
COL28A1-206ENST00000465339 RBM46Q8TBY0 533 aaKnown RBP16.44■□□□□ 0.22
COL28A1-206ENST00000465339 L3MBTL3Q96JM7 780 aaPredicted RBP16.44■□□□□ 0.22
COL28A1-206ENST00000465339 POLLQ9UGP5 575 aa16.44■□□□□ 0.22
COL28A1-206ENST00000465339 XDHP47989 1333 aa16.44■□□□□ 0.22
COL28A1-206ENST00000465339 ZNF541Q9H0D2 1346 aa16.44■□□□□ 0.22
COL28A1-206ENST00000465339 NBPF7P0C2Y1 421 aaPredicted RBP16.43■□□□□ 0.22
COL28A1-206ENST00000465339 IFIT5Q13325 482 aaKnown RBP16.43■□□□□ 0.22
COL28A1-206ENST00000465339 FAM161AQ3B820 660 aa16.43■□□□□ 0.22
COL28A1-206ENST00000465339 LMBR1LQ6UX01 489 aa16.43■□□□□ 0.22
COL28A1-206ENST00000465339 MPHOSPH8Q99549 860 aa16.43■□□□□ 0.22
COL28A1-206ENST00000465339 ZC3H12CQ9C0D7 883 aaKnown RBP16.43■□□□□ 0.22
COL28A1-206ENST00000465339 GGA1Q9UJY5 639 aa16.43■□□□□ 0.22
COL28A1-206ENST00000465339 MINPP1Q9UNW1 487 aa16.43■□□□□ 0.22
COL28A1-206ENST00000465339 ATP2B4P23634 1241 aa16.42■□□□□ 0.22
COL28A1-206ENST00000465339 EPHA10Q5JZY3 1008 aa16.42■□□□□ 0.22
COL28A1-206ENST00000465339 USP44Q9H0E7 712 aa16.42■□□□□ 0.22
COL28A1-206ENST00000465339 CHMP3Q9Y3E7 222 aa16.42■□□□□ 0.22
COL28A1-206ENST00000465339 RIMBP2O15034 1052 aa16.41■□□□□ 0.22
COL28A1-206ENST00000465339 UFL1O94874 794 aa16.41■□□□□ 0.22
COL28A1-206ENST00000465339 FSTL1Q12841 308 aa16.41■□□□□ 0.22
COL28A1-206ENST00000465339 CCDC57Q2TAC2 916 aa16.41■□□□□ 0.22
COL28A1-206ENST00000465339 SUCLG2Q96I99 432 aa16.41■□□□□ 0.22
COL28A1-206ENST00000465339 ANKRD2Q9GZV1 360 aa16.41■□□□□ 0.22
COL28A1-206ENST00000465339 GJA3Q9Y6H8 435 aa16.41■□□□□ 0.22
COL28A1-206ENST00000465339 BCAR3O75815 825 aa16.4■□□□□ 0.22
COL28A1-206ENST00000465339 CXCL9Q07325 125 aa16.4■□□□□ 0.22
COL28A1-206ENST00000465339 TNIP1Q15025 636 aa16.4■□□□□ 0.22
COL28A1-206ENST00000465339 KAZALD1Q96I82 304 aa16.4■□□□□ 0.22
COL28A1-206ENST00000465339 HACL1Q9UJ83 578 aa16.4■□□□□ 0.22
COL28A1-206ENST00000465339 HDAC5Q9UQL6 1122 aa16.4■□□□□ 0.22
COL28A1-206ENST00000465339 G3V3G9 751 aa16.39■□□□□ 0.21
COL28A1-206ENST00000465339 RABL6Q3YEC7 729 aaPredicted RBP16.39■□□□□ 0.21
COL28A1-206ENST00000465339 DCAF8Q5TAQ9 597 aa16.39■□□□□ 0.21
COL28A1-206ENST00000465339 CIAPIN1Q6FI81 312 aa16.39■□□□□ 0.21
COL28A1-206ENST00000465339 SMC1BQ8NDV3 1235 aa16.39■□□□□ 0.21
COL28A1-206ENST00000465339 LEMD3Q9Y2U8 911 aa16.39■□□□□ 0.21
COL28A1-206ENST00000465339 LMOD1P29536 600 aaPredicted RBP16.38■□□□□ 0.21
COL28A1-206ENST00000465339 TAF7LQ5H9L4 462 aa16.38■□□□□ 0.21
COL28A1-206ENST00000465339 INTS3Q68E01 1043 aaKnown RBP16.38■□□□□ 0.21
COL28A1-206ENST00000465339 ATF7IPQ6VMQ6 1270 aa16.38■□□□□ 0.21
COL28A1-206ENST00000465339 FRAT1Q92837 279 aaPredicted RBP16.38■□□□□ 0.21
COL28A1-206ENST00000465339 TAF1DQ9H5J8 278 aaPredicted RBP16.38■□□□□ 0.21
COL28A1-206ENST00000465339 BICC1Q9H694 974 aaKnown RBP16.38■□□□□ 0.21
COL28A1-206ENST00000465339 LDHAL6AQ6ZMR3 332 aa16.37■□□□□ 0.21
COL28A1-206ENST00000465339 PNMA8AQ86V59 439 aaPredicted RBP16.37■□□□□ 0.21
COL28A1-206ENST00000465339 DBNDD1Q9H9R9 158 aa16.37■□□□□ 0.21
COL28A1-206ENST00000465339 YDJCA8MPS7 323 aa16.36■□□□□ 0.21
COL28A1-206ENST00000465339 ECE2O60344 883 aa16.36■□□□□ 0.21
COL28A1-206ENST00000465339 RAD17O75943 681 aa16.36■□□□□ 0.21
COL28A1-206ENST00000465339 UBTFL1P0CB47 393 aaPredicted RBP16.36■□□□□ 0.21
COL28A1-206ENST00000465339 EPHX2P34913 555 aa16.36■□□□□ 0.21
COL28A1-206ENST00000465339 CHRNDQ07001 517 aa16.36■□□□□ 0.21
COL28A1-206ENST00000465339 DOK7Q18PE1 504 aa16.36■□□□□ 0.21
COL28A1-206ENST00000465339 ZKSCAN2Q63HK3 967 aa16.36■□□□□ 0.21
COL28A1-206ENST00000465339 ANKRD44Q8N8A2 993 aa16.36■□□□□ 0.21
COL28A1-206ENST00000465339 GPR101Q96P66 508 aaPredicted RBP16.36■□□□□ 0.21
COL28A1-206ENST00000465339 TRIM27P14373 513 aa16.35■□□□□ 0.21
COL28A1-206ENST00000465339 HSPA6P17066 643 aa16.35■□□□□ 0.21
COL28A1-206ENST00000465339 SCNN1DP51172 638 aa16.35■□□□□ 0.21
COL28A1-206ENST00000465339 PODNQ7Z5L7 613 aa16.35■□□□□ 0.21
COL28A1-206ENST00000465339 ZNF594Q96JF6 807 aaPredicted RBP16.35■□□□□ 0.21
COL28A1-206ENST00000465339 CNNM1Q9NRU3 951 aa16.35■□□□□ 0.21
COL28A1-206ENST00000465339 ZNF804BA4D1E1 1349 aa16.35■□□□□ 0.21
COL28A1-206ENST00000465339 MED23Q9ULK4 1368 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms