RNA–Protein interactions for RNA: ENST00000461159.6

HDAC9-219, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-219ENST00000461159 SUCLG2Q96I99 432 aa10.12□□□□□ -0.79
HDAC9-219ENST00000461159 CCDC85AQ96PX6 553 aaPredicted RBP10.12□□□□□ -0.79
HDAC9-219ENST00000461159 A0A087WZG4 1122 aa10.12□□□□□ -0.79
HDAC9-219ENST00000461159 KIF1CO43896 1103 aaKnown RBP10.12□□□□□ -0.79
HDAC9-219ENST00000461159 GCKRQ14397 625 aa10.12□□□□□ -0.79
HDAC9-219ENST00000461159 EPHA10Q5JZY3 1008 aa10.12□□□□□ -0.79
HDAC9-219ENST00000461159 INTS5Q6P9B9 1019 aaKnown RBP10.12□□□□□ -0.79
HDAC9-219ENST00000461159 POTEAQ6S8J7 498 aa10.12□□□□□ -0.79
HDAC9-219ENST00000461159 LINC00116Q8NCU8 138 aa10.12□□□□□ -0.79
HDAC9-219ENST00000461159 ZBTB9Q96C00 473 aa10.12□□□□□ -0.79
HDAC9-219ENST00000461159 PA2G4Q9UQ80 394 aaKnown RBP10.12□□□□□ -0.79
HDAC9-219ENST00000461159 ZNF771Q7L3S4 317 aaPredicted RBP10.11□□□□□ -0.79
HDAC9-219ENST00000461159 AMIGO3Q86WK7 504 aa10.11□□□□□ -0.79
HDAC9-219ENST00000461159 TEX13AQ9BXU3 409 aaPredicted RBP10.11□□□□□ -0.79
HDAC9-219ENST00000461159 BICC1Q9H694 974 aaKnown RBP10.11□□□□□ -0.79
HDAC9-219ENST00000461159 MYH14Q7Z406 1995 aaKnown RBP10.11□□□□□ -0.79
HDAC9-219ENST00000461159 CBX1P83916 185 aa10.11□□□□□ -0.79
HDAC9-219ENST00000461159 ATP8B2P98198 1209 aa10.11□□□□□ -0.79
HDAC9-219ENST00000461159 TSHZ3Q63HK5 1081 aa10.11□□□□□ -0.79
HDAC9-219ENST00000461159 CALCOCO1Q9P1Z2 691 aa10.11□□□□□ -0.79
HDAC9-219ENST00000461159 R3HCC1Q9Y3T6 440 aaKnown RBP10.11□□□□□ -0.79
HDAC9-219ENST00000461159 LAMB4A4D0S4 1761 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 GABPB1Q06547 395 aaPredicted RBP10.1□□□□□ -0.79
HDAC9-219ENST00000461159 DZIP3Q86Y13 1208 aaKnown RBP10.1□□□□□ -0.79
HDAC9-219ENST00000461159 FAM89AQ96GI7 184 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 SGSM3Q96HU1 749 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.1□□□□□ -0.79
HDAC9-219ENST00000461159 SIL1Q9H173 461 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 BRMS1Q9HCU9 246 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 DONSONQ9NYP3 566 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 RBM6P78332 1123 aaKnown RBP10.1□□□□□ -0.79
HDAC9-219ENST00000461159 ZNF772Q68DY9 489 aaPredicted RBP10.1□□□□□ -0.79
HDAC9-219ENST00000461159 MCTP1Q6DN14 999 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 KIF6Q6ZMV9 814 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 RINLQ6ZS11 566 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 FBXO41Q8TF61 875 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 IL1RAPL2Q9NP60 686 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 CCDC87Q9NVE4 849 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 CCNL1Q9UK58 526 aaPredicted RBP10.1□□□□□ -0.79
HDAC9-219ENST00000461159 CHMP3Q9Y3E7 222 aa10.1□□□□□ -0.79
HDAC9-219ENST00000461159 SURF6O75683 361 aaKnown RBP10.09□□□□□ -0.79
HDAC9-219ENST00000461159 ALDH1L1O75891 902 aa10.09□□□□□ -0.79
HDAC9-219ENST00000461159 RXRBP28702 533 aa10.09□□□□□ -0.79
HDAC9-219ENST00000461159 LRRC4BQ9NT99 713 aa10.09□□□□□ -0.79
HDAC9-219ENST00000461159 THSD7AQ9UPZ6 1657 aa10.09□□□□□ -0.79
HDAC9-219ENST00000461159 GTF2A1P52655 376 aaPredicted RBP10.09□□□□□ -0.79
HDAC9-219ENST00000461159 CSPP1Q1MSJ5 1256 aa10.09□□□□□ -0.79
HDAC9-219ENST00000461159 SMARCC1Q92922 1105 aaPredicted RBP10.09□□□□□ -0.79
HDAC9-219ENST00000461159 MRVI1Q9Y6F6 885 aa10.09□□□□□ -0.79
HDAC9-219ENST00000461159 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.09□□□□□ -0.79
HDAC9-219ENST00000461159 ARFGEF2Q9Y6D5 1785 aa10.08□□□□□ -0.8
HDAC9-219ENST00000461159 MTA1Q13330 715 aa10.08□□□□□ -0.8
HDAC9-219ENST00000461159 ZSCAN23Q3MJ62 389 aa10.08□□□□□ -0.8
HDAC9-219ENST00000461159 CAVIN1Q6NZI2 390 aaKnown RBP10.08□□□□□ -0.8
HDAC9-219ENST00000461159 SASS6Q6UVJ0 657 aa10.08□□□□□ -0.8
HDAC9-219ENST00000461159 BICDL1Q6ZP65 573 aa10.08□□□□□ -0.8
HDAC9-219ENST00000461159 ITFG2Q969R8 447 aa10.08□□□□□ -0.8
HDAC9-219ENST00000461159 BRWD3Q6RI45 1802 aa10.08□□□□□ -0.8
HDAC9-219ENST00000461159 HMMRO75330 724 aa10.08□□□□□ -0.8
HDAC9-219ENST00000461159 EIF5P55010 431 aaKnown RBP10.08□□□□□ -0.8
HDAC9-219ENST00000461159 PPP4R3CPQ6ZMV5 832 aa10.08□□□□□ -0.8
HDAC9-219ENST00000461159 PLEKHM2Q8IWE5 1019 aa10.08□□□□□ -0.8
HDAC9-219ENST00000461159 ZNF513Q8N8E2 541 aaPredicted RBP10.08□□□□□ -0.8
HDAC9-219ENST00000461159 SSH3Q8TE77 659 aa10.08□□□□□ -0.8
HDAC9-219ENST00000461159 MAP3K15Q6ZN16 1313 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 GNPATO15228 680 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 ST18O60284 1047 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 IL6STP40189 918 aaPredicted RBP10.07□□□□□ -0.8
HDAC9-219ENST00000461159 TCIRG1Q13488 830 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 ANKRD23Q86SG2 305 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 BORCS6Q96GS4 357 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 LMBRD1Q9NUN5 540 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 CWC25Q9NXE8 425 aaPredicted RBP10.07□□□□□ -0.8
HDAC9-219ENST00000461159 NOL7Q9UMY1 257 aaKnown RBP10.07□□□□□ -0.8
HDAC9-219ENST00000461159 ZBTB12Q9Y330 459 aaPredicted RBP10.07□□□□□ -0.8
HDAC9-219ENST00000461159 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.07□□□□□ -0.8
HDAC9-219ENST00000461159 NRDCO43847 1150 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 CYP2E1P05181 493 aaPredicted RBP10.07□□□□□ -0.8
HDAC9-219ENST00000461159 CALRP27797 417 aaKnown RBP10.07□□□□□ -0.8
HDAC9-219ENST00000461159 POLA2Q14181 598 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 FAM196AQ6ZSG2 479 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 CCDC24Q8N4L8 307 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 MNS1Q8NEH6 495 aa10.07□□□□□ -0.8
HDAC9-219ENST00000461159 SRP68Q9UHB9 627 aaKnown RBP10.07□□□□□ -0.8
HDAC9-219ENST00000461159 BTAF1O14981 1849 aa10.06□□□□□ -0.8
HDAC9-219ENST00000461159 GSPT1P15170 499 aaKnown RBP10.06□□□□□ -0.8
HDAC9-219ENST00000461159 MCM5P33992 734 aa10.06□□□□□ -0.8
HDAC9-219ENST00000461159 SETDB1Q15047 1291 aa10.06□□□□□ -0.8
HDAC9-219ENST00000461159 TTC22Q5TAA0 569 aa10.06□□□□□ -0.8
HDAC9-219ENST00000461159 LMBR1LQ6UX01 489 aa10.06□□□□□ -0.8
HDAC9-219ENST00000461159 GIGYF2Q6Y7W6 1299 aaKnown RBP10.06□□□□□ -0.8
HDAC9-219ENST00000461159 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.06□□□□□ -0.8
HDAC9-219ENST00000461159 AFDNP55196 1824 aaKnown RBP10.06□□□□□ -0.8
HDAC9-219ENST00000461159 UTYO14607 1347 aa10.06□□□□□ -0.8
HDAC9-219ENST00000461159 TJP1Q07157 1748 aa10.06□□□□□ -0.8
HDAC9-219ENST00000461159 TNNT3P45378 269 aaPredicted RBP10.06□□□□□ -0.8
HDAC9-219ENST00000461159 NOP2P46087 812 aaKnown RBP10.06□□□□□ -0.8
HDAC9-219ENST00000461159 PDLIM2Q96JY6 352 aa10.06□□□□□ -0.8
HDAC9-219ENST00000461159 UBN2Q6ZU65 1347 aa10.05□□□□□ -0.8
HDAC9-219ENST00000461159 CASP7P55210 303 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms