RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 ZNRF3Q9ULT6 936 aa23.59■■□□□ 1.37
USP39-209ENST00000458268 IQCA1LA6NCM1 817 aa23.58■■□□□ 1.37
USP39-209ENST00000458268 RARSP54136 660 aaKnown RBP23.58■■□□□ 1.37
USP39-209ENST00000458268 FOXO4P98177 505 aa23.58■■□□□ 1.37
USP39-209ENST00000458268 SUCLG2Q96I99 432 aa23.58■■□□□ 1.37
USP39-209ENST00000458268 HACL1Q9UJ83 578 aa23.58■■□□□ 1.37
USP39-209ENST00000458268 XDHP47989 1333 aa23.58■■□□□ 1.36
USP39-209ENST00000458268 RTL9Q8NET4 1388 aa23.57■■□□□ 1.36
USP39-209ENST00000458268 NBPF7P0C2Y1 421 aaPredicted RBP23.57■■□□□ 1.36
USP39-209ENST00000458268 LMOD1P29536 600 aaPredicted RBP23.57■■□□□ 1.36
USP39-209ENST00000458268 IFIT5Q13325 482 aaKnown RBP23.57■■□□□ 1.36
USP39-209ENST00000458268 FRAT1Q92837 279 aaPredicted RBP23.57■■□□□ 1.36
USP39-209ENST00000458268 ZC3H12CQ9C0D7 883 aaKnown RBP23.57■■□□□ 1.36
USP39-209ENST00000458268 VPS33BQ9H267 617 aa23.57■■□□□ 1.36
USP39-209ENST00000458268 CLEC11AQ9Y240 323 aa23.57■■□□□ 1.36
USP39-209ENST00000458268 CSF1RP07333 972 aa23.56■■□□□ 1.36
USP39-209ENST00000458268 POTEIP0CG38 1075 aa23.56■■□□□ 1.36
USP39-209ENST00000458268 POTEJP0CG39 1038 aa23.56■■□□□ 1.36
USP39-209ENST00000458268 CIAPIN1Q6FI81 312 aa23.56■■□□□ 1.36
USP39-209ENST00000458268 SMC1BQ8NDV3 1235 aa23.56■■□□□ 1.36
USP39-209ENST00000458268 BSDC1Q9NW68 430 aaPredicted RBP23.56■■□□□ 1.36
USP39-209ENST00000458268 CXCL9Q07325 125 aa23.55■■□□□ 1.36
USP39-209ENST00000458268 CCDC57Q2TAC2 916 aa23.55■■□□□ 1.36
USP39-209ENST00000458268 ZNF594Q96JF6 807 aaPredicted RBP23.55■■□□□ 1.36
USP39-209ENST00000458268 L3MBTL3Q96JM7 780 aaPredicted RBP23.55■■□□□ 1.36
USP39-209ENST00000458268 API5Q9BZZ5 524 aaKnown RBP23.55■■□□□ 1.36
USP39-209ENST00000458268 MINPP1Q9UNW1 487 aa23.55■■□□□ 1.36
USP39-209ENST00000458268 ZBED9Q6R2W3 1325 aa23.55■■□□□ 1.36
USP39-209ENST00000458268 KIF16BQ96L93 1317 aa23.55■■□□□ 1.36
USP39-209ENST00000458268 ECE2O60344 883 aa23.54■■□□□ 1.36
USP39-209ENST00000458268 HSPA6P17066 643 aa23.54■■□□□ 1.36
USP39-209ENST00000458268 EPHX2P34913 555 aa23.54■■□□□ 1.36
USP39-209ENST00000458268 TAF1DQ9H5J8 278 aaPredicted RBP23.54■■□□□ 1.36
USP39-209ENST00000458268 PODXL2Q9NZ53 605 aa23.54■■□□□ 1.36
USP39-209ENST00000458268 WTIPA6NIX2 430 aaPredicted RBP23.53■■□□□ 1.36
USP39-209ENST00000458268 YDJCA8MPS7 323 aa23.53■■□□□ 1.36
USP39-209ENST00000458268 BCAR3O75815 825 aa23.53■■□□□ 1.36
USP39-209ENST00000458268 ATP2B4P23634 1241 aa23.53■■□□□ 1.36
USP39-209ENST00000458268 KCNJ4P48050 445 aa23.53■■□□□ 1.36
USP39-209ENST00000458268 BICC1Q9H694 974 aaKnown RBP23.53■■□□□ 1.36
USP39-209ENST00000458268 PLIN1O60240 522 aa23.52■■□□□ 1.36
USP39-209ENST00000458268 HELBQ8NG08 1087 aaPredicted RBP23.52■■□□□ 1.36
USP39-209ENST00000458268 EPS15P42566 896 aa23.51■■□□□ 1.35
USP39-209ENST00000458268 GMPSP49915 693 aaPredicted RBP23.51■■□□□ 1.35
USP39-209ENST00000458268 CCT4P50991 539 aaKnown RBP23.51■■□□□ 1.35
USP39-209ENST00000458268 FSTL1Q12841 308 aa23.51■■□□□ 1.35
USP39-209ENST00000458268 TNIP1Q15025 636 aa23.51■■□□□ 1.35
USP39-209ENST00000458268 CNNM1Q9NRU3 951 aa23.51■■□□□ 1.35
USP39-209ENST00000458268 CHRNDQ07001 517 aa23.5■■□□□ 1.35
USP39-209ENST00000458268 FBXW7Q969H0 707 aa23.5■■□□□ 1.35
USP39-209ENST00000458268 KCNQ5Q9NR82 932 aa23.5■■□□□ 1.35
USP39-209ENST00000458268 PSMD14O00487 310 aa23.49■■□□□ 1.35
USP39-209ENST00000458268 TAF5LO75529 589 aa23.49■■□□□ 1.35
USP39-209ENST00000458268 SCNN1DP51172 638 aa23.49■■□□□ 1.35
USP39-209ENST00000458268 CHADLQ6NUI6 762 aa23.49■■□□□ 1.35
USP39-209ENST00000458268 CLUAP1Q96AJ1 413 aa23.49■■□□□ 1.35
USP39-209ENST00000458268 KAZALD1Q96I82 304 aa23.49■■□□□ 1.35
USP39-209ENST00000458268 ANKRD2Q9GZV1 360 aa23.49■■□□□ 1.35
USP39-209ENST00000458268 USP44Q9H0E7 712 aa23.49■■□□□ 1.35
USP39-209ENST00000458268 TNNQ9UQP3 1299 aa23.49■■□□□ 1.35
USP39-209ENST00000458268 ZBTB12Q9Y330 459 aaPredicted RBP23.49■■□□□ 1.35
USP39-209ENST00000458268 A0A1B0GUL6 1792 aa23.49■■□□□ 1.35
USP39-209ENST00000458268 SCN9AQ15858 1988 aa23.49■■□□□ 1.35
USP39-209ENST00000458268 LDHAL6AQ6ZMR3 332 aa23.48■■□□□ 1.35
USP39-209ENST00000458268 UTYO14607 1347 aa23.48■■□□□ 1.35
USP39-209ENST00000458268 UBTFL1P0CB47 393 aaPredicted RBP23.47■■□□□ 1.35
USP39-209ENST00000458268 HTRA3P83110 453 aa23.47■■□□□ 1.35
USP39-209ENST00000458268 ZNF804BA4D1E1 1349 aa23.46■■□□□ 1.35
USP39-209ENST00000458268 SNAP23O00161 211 aa23.46■■□□□ 1.35
USP39-209ENST00000458268 IPO8O15397 1037 aaKnown RBP23.46■■□□□ 1.35
USP39-209ENST00000458268 LDHDQ86WU2 507 aa23.46■■□□□ 1.35
USP39-209ENST00000458268 GPRC5DQ9NZD1 345 aa23.46■■□□□ 1.35
USP39-209ENST00000458268 MED23Q9ULK4 1368 aa23.45■■□□□ 1.34
USP39-209ENST00000458268 KLRK1P26718 216 aa23.45■■□□□ 1.34
USP39-209ENST00000458268 BRPF1P55201 1214 aaPredicted RBP23.45■■□□□ 1.34
USP39-209ENST00000458268 PNMA8AQ86V59 439 aaPredicted RBP23.45■■□□□ 1.34
USP39-209ENST00000458268 ANKRD44Q8N8A2 993 aa23.45■■□□□ 1.34
USP39-209ENST00000458268 LEMD3Q9Y2U8 911 aa23.45■■□□□ 1.34
USP39-209ENST00000458268 SHTN1A0MZ66 631 aa23.44■■□□□ 1.34
USP39-209ENST00000458268 APLP1P51693 650 aa23.44■■□□□ 1.34
USP39-209ENST00000458268 MAP1SQ66K74 1059 aaPredicted RBP23.44■■□□□ 1.34
USP39-209ENST00000458268 PUS3Q9BZE2 481 aaKnown RBP23.44■■□□□ 1.34
USP39-209ENST00000458268 TRIM27P14373 513 aa23.43■■□□□ 1.34
USP39-209ENST00000458268 TXNRD3Q86VQ6 643 aa23.43■■□□□ 1.34
USP39-209ENST00000458268 MICALL2Q8IY33 904 aa23.43■■□□□ 1.34
USP39-209ENST00000458268 KLHDC4Q8TBB5 520 aa23.43■■□□□ 1.34
USP39-209ENST00000458268 RBM26Q5T8P6 1007 aaKnown RBP23.42■■□□□ 1.34
USP39-209ENST00000458268 ZKSCAN2Q63HK3 967 aa23.42■■□□□ 1.34
USP39-209ENST00000458268 ATF7IPQ6VMQ6 1270 aa23.42■■□□□ 1.34
USP39-209ENST00000458268 ARHGAP45Q92619 1136 aa23.42■■□□□ 1.34
USP39-209ENST00000458268 MEIS3Q99687 375 aa23.42■■□□□ 1.34
USP39-209ENST00000458268 ADARB2Q9NS39 739 aaKnown RBP23.42■■□□□ 1.34
USP39-209ENST00000458268 CNOT7Q9UIV1 285 aaKnown RBP23.42■■□□□ 1.34
USP39-209ENST00000458268 LRRFIP2Q9Y608 721 aaKnown RBP23.42■■□□□ 1.34
USP39-209ENST00000458268 PSME4Q14997 1843 aa23.41■■□□□ 1.34
USP39-209ENST00000458268 H7C1D1 291 aa23.41■■□□□ 1.34
USP39-209ENST00000458268 ADAMTSL1Q8N6G6 1762 aa23.4■■□□□ 1.34
USP39-209ENST00000458268 RABL6Q3YEC7 729 aaPredicted RBP23.4■■□□□ 1.34
USP39-209ENST00000458268 TBC1D10BQ4KMP7 808 aaPredicted RBP23.39■■□□□ 1.33
USP39-209ENST00000458268 LRRC24Q50LG9 513 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms