RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SPEF2Q9C093 1822 aa14.41□□□□□ -0.1
SCN9A-204ENST00000452182 IGHMBP2P38935 993 aaKnown RBP14.41□□□□□ -0.1
SCN9A-204ENST00000452182 BSDC1Q9NW68 430 aaPredicted RBP14.41□□□□□ -0.1
SCN9A-204ENST00000452182 ARFGEF1Q9Y6D6 1849 aa14.4□□□□□ -0.1
SCN9A-204ENST00000452182 TAF7LQ5H9L4 462 aa14.4□□□□□ -0.1
SCN9A-204ENST00000452182 PRPF40BQ6NWY9 871 aaKnown RBP14.4□□□□□ -0.1
SCN9A-204ENST00000452182 MPHOSPH8Q99549 860 aa14.4□□□□□ -0.1
SCN9A-204ENST00000452182 PPEF1O14829 653 aaPredicted RBP14.39□□□□□ -0.11
SCN9A-204ENST00000452182 CIAO1O76071 339 aa14.39□□□□□ -0.11
SCN9A-204ENST00000452182 HDAC1Q13547 482 aaPredicted RBP14.39□□□□□ -0.11
SCN9A-204ENST00000452182 DALRD3Q5D0E6 543 aaKnown RBP14.39□□□□□ -0.11
SCN9A-204ENST00000452182 LDHAL6AQ6ZMR3 332 aa14.39□□□□□ -0.11
SCN9A-204ENST00000452182 C7orf43Q8WVR3 580 aa14.39□□□□□ -0.11
SCN9A-204ENST00000452182 ZNF594Q96JF6 807 aaPredicted RBP14.39□□□□□ -0.11
SCN9A-204ENST00000452182 NOP58Q9Y2X3 529 aaKnown RBP14.39□□□□□ -0.11
SCN9A-204ENST00000452182 ATP6V0A2Q9Y487 856 aa14.39□□□□□ -0.11
SCN9A-204ENST00000452182 CC2D2BQ6DHV5 1058 aa14.38□□□□□ -0.11
SCN9A-204ENST00000452182 SP8Q8IXZ3 490 aa14.38□□□□□ -0.11
SCN9A-204ENST00000452182 KLHDC4Q8TBB5 520 aa14.38□□□□□ -0.11
SCN9A-204ENST00000452182 EYA2O00167 538 aa14.37□□□□□ -0.11
SCN9A-204ENST00000452182 GRIPAP1Q4V328 841 aa14.37□□□□□ -0.11
SCN9A-204ENST00000452182 RIPOR2Q9Y4F9 1068 aa14.37□□□□□ -0.11
SCN9A-204ENST00000452182 GOLGB1Q14789 3259 aaKnown RBP14.37□□□□□ -0.11
SCN9A-204ENST00000452182 A0A1B0GUL6 1792 aa14.37□□□□□ -0.11
SCN9A-204ENST00000452182 HSP90AB4PQ58FF6 505 aa14.37□□□□□ -0.11
SCN9A-204ENST00000452182 SOGA3Q5TF21 947 aa14.37□□□□□ -0.11
SCN9A-204ENST00000452182 RWDD1Q9H446 243 aaPredicted RBP14.37□□□□□ -0.11
SCN9A-204ENST00000452182 CNNM1Q9NRU3 951 aa14.37□□□□□ -0.11
SCN9A-204ENST00000452182 MINPP1Q9UNW1 487 aa14.37□□□□□ -0.11
SCN9A-204ENST00000452182 PA2G4Q9UQ80 394 aaKnown RBP14.37□□□□□ -0.11
SCN9A-204ENST00000452182 MROH5Q6ZUA9 1318 aa14.36□□□□□ -0.11
SCN9A-204ENST00000452182 LTBP1Q14766 1721 aa14.36□□□□□ -0.11
SCN9A-204ENST00000452182 SURF6O75683 361 aaKnown RBP14.36□□□□□ -0.11
SCN9A-204ENST00000452182 IL15P40933 162 aaPredicted RBP14.36□□□□□ -0.11
SCN9A-204ENST00000452182 ATG9AQ7Z3C6 839 aa14.36□□□□□ -0.11
SCN9A-204ENST00000452182 PUS3Q9BZE2 481 aaKnown RBP14.36□□□□□ -0.11
SCN9A-204ENST00000452182 TMX4Q9H1E5 349 aaPredicted RBP14.36□□□□□ -0.11
SCN9A-204ENST00000452182 DCTPP1Q9H773 170 aa14.36□□□□□ -0.11
SCN9A-204ENST00000452182 SNED1Q8TER0 1413 aa14.36□□□□□ -0.11
SCN9A-204ENST00000452182 SPDYE2BA6NHP3 402 aa14.35□□□□□ -0.11
SCN9A-204ENST00000452182 SPDYE6P0CI01 402 aa14.35□□□□□ -0.11
SCN9A-204ENST00000452182 G3BP1Q13283 466 aaKnown RBP eCLIP14.35□□□□□ -0.11
SCN9A-204ENST00000452182 SPDYE2Q495Y8 402 aa14.35□□□□□ -0.11
SCN9A-204ENST00000452182 LRRC24Q50LG9 513 aa14.35□□□□□ -0.11
SCN9A-204ENST00000452182 ANKRD2Q9GZV1 360 aa14.35□□□□□ -0.11
SCN9A-204ENST00000452182 SIL1Q9H173 461 aa14.35□□□□□ -0.11
SCN9A-204ENST00000452182 CHRNDQ07001 517 aa14.34□□□□□ -0.11
SCN9A-204ENST00000452182 PODXL2Q9NZ53 605 aa14.34□□□□□ -0.11
SCN9A-204ENST00000452182 BCS1LQ9Y276 419 aa14.34□□□□□ -0.11
SCN9A-204ENST00000452182 FER1L6Q2WGJ9 1857 aa14.34□□□□□ -0.11
SCN9A-204ENST00000452182 C21orf2O43822 256 aa14.33□□□□□ -0.11
SCN9A-204ENST00000452182 RAB11FIP3O75154 756 aa14.33□□□□□ -0.11
SCN9A-204ENST00000452182 CCDC93Q567U6 631 aa14.33□□□□□ -0.11
SCN9A-204ENST00000452182 ERC1Q8IUD2 1116 aa14.33□□□□□ -0.11
SCN9A-204ENST00000452182 RTKN2Q8IZC4 609 aa14.33□□□□□ -0.11
SCN9A-204ENST00000452182 VGLL2Q8N8G2 317 aa14.33□□□□□ -0.11
SCN9A-204ENST00000452182 GCC1Q96CN9 775 aa14.33□□□□□ -0.11
SCN9A-204ENST00000452182 XDHP47989 1333 aa14.33□□□□□ -0.12
SCN9A-204ENST00000452182 PDE8BO95263 885 aa14.33□□□□□ -0.12
SCN9A-204ENST00000452182 IGHDP01880 384 aa14.33□□□□□ -0.12
SCN9A-204ENST00000452182 EXOC6BQ9Y2D4 811 aa14.33□□□□□ -0.12
SCN9A-204ENST00000452182 SASH1O94885 1247 aa14.32□□□□□ -0.12
SCN9A-204ENST00000452182 METTL24Q5JXM2 366 aa14.32□□□□□ -0.12
SCN9A-204ENST00000452182 CEP126Q9P2H0 1117 aa14.32□□□□□ -0.12
SCN9A-204ENST00000452182 NSFL1CQ9UNZ2 370 aaKnown RBP14.32□□□□□ -0.12
SCN9A-204ENST00000452182 GPSM2P81274 684 aa14.31□□□□□ -0.12
SCN9A-204ENST00000452182 CACNB1Q02641 598 aaPredicted RBP14.31□□□□□ -0.12
SCN9A-204ENST00000452182 OS9Q13438 667 aaPredicted RBP14.31□□□□□ -0.12
SCN9A-204ENST00000452182 OLFM4Q6UX06 510 aa14.31□□□□□ -0.12
SCN9A-204ENST00000452182 SMC5Q8IY18 1101 aa14.31□□□□□ -0.12
SCN9A-204ENST00000452182 MPNDQ8N594 471 aa14.31□□□□□ -0.12
SCN9A-204ENST00000452182 KIF1BPQ96EK5 621 aa14.31□□□□□ -0.12
SCN9A-204ENST00000452182 PSMD1Q99460 953 aa14.31□□□□□ -0.12
SCN9A-204ENST00000452182 RTFDC1Q9BY42 306 aaPredicted RBP14.31□□□□□ -0.12
SCN9A-204ENST00000452182 PPP4R2Q9NY27 417 aa14.31□□□□□ -0.12
SCN9A-204ENST00000452182 ANKIB1Q9P2G1 1089 aa14.31□□□□□ -0.12
SCN9A-204ENST00000452182 WWC3Q9ULE0 1092 aa14.31□□□□□ -0.12
SCN9A-204ENST00000452182 LEMD3Q9Y2U8 911 aa14.31□□□□□ -0.12
SCN9A-204ENST00000452182 DUOX1Q9NRD9 1551 aa14.31□□□□□ -0.12
SCN9A-204ENST00000452182 ATP2B4P23634 1241 aa14.3□□□□□ -0.12
SCN9A-204ENST00000452182 DPP8Q6V1X1 898 aaPredicted RBP14.3□□□□□ -0.12
SCN9A-204ENST00000452182 SLC51AQ86UW1 340 aa14.3□□□□□ -0.12
SCN9A-204ENST00000452182 RHPN1Q8TCX5 695 aa14.3□□□□□ -0.12
SCN9A-204ENST00000452182 GPR108Q9NPR9 543 aa14.3□□□□□ -0.12
SCN9A-204ENST00000452182 LTBP3Q9NS15 1303 aa14.3□□□□□ -0.12
SCN9A-204ENST00000452182 TAF5LO75529 589 aa14.3□□□□□ -0.12
SCN9A-204ENST00000452182 YBX3P16989 372 aaKnown RBP eCLIP14.3□□□□□ -0.12
SCN9A-204ENST00000452182 TFCP2Q12800 502 aa14.3□□□□□ -0.12
SCN9A-204ENST00000452182 UBE4AQ14139 1066 aa14.3□□□□□ -0.12
SCN9A-204ENST00000452182 TBC1D16Q8TBP0 767 aa14.3□□□□□ -0.12
SCN9A-204ENST00000452182 GGA1Q9UJY5 639 aa14.3□□□□□ -0.12
SCN9A-204ENST00000452182 AKAP2Q9Y2D5 859 aa14.3□□□□□ -0.12
SCN9A-204ENST00000452182 FGFR2P21802 821 aa14.29□□□□□ -0.12
SCN9A-204ENST00000452182 PUM3Q15397 648 aaKnown RBP14.29□□□□□ -0.12
SCN9A-204ENST00000452182 SUPT20HQ8NEM7 779 aa14.29□□□□□ -0.12
SCN9A-204ENST00000452182 HELBQ8NG08 1087 aaPredicted RBP14.29□□□□□ -0.12
SCN9A-204ENST00000452182 CCDC136Q96JN2 1154 aa14.29□□□□□ -0.12
SCN9A-204ENST00000452182 LRRCC1Q9C099 1032 aa14.29□□□□□ -0.12
SCN9A-204ENST00000452182 VPS33BQ9H267 617 aa14.29□□□□□ -0.12
SCN9A-204ENST00000452182 POLLQ9UGP5 575 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms