RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	EYA2	O00167	538 aa		20.08	■□□□□ 0.8
TOM1-210	ENST00000449058	TERF1	P54274	439 aa		20.08	■□□□□ 0.8
TOM1-210	ENST00000449058		Q6ZUG5	572 aa		20.08	■□□□□ 0.8
TOM1-210	ENST00000449058	USP25	Q9UHP3	1055 aa		20.08	■□□□□ 0.8
TOM1-210	ENST00000449058	CIAO1	O76071	339 aa		20.07	■□□□□ 0.8
TOM1-210	ENST00000449058	FAM173B	Q6P4H8	233 aa		20.07	■□□□□ 0.8
TOM1-210	ENST00000449058	NEUROD6	Q96NK8	337 aa		20.07	■□□□□ 0.8
TOM1-210	ENST00000449058	ZBTB3	Q9H5J0	574 aa		20.07	■□□□□ 0.8
TOM1-210	ENST00000449058	GOLIM4	O00461	696 aa		20.07	■□□□□ 0.8
TOM1-210	ENST00000449058	TIMM10	P62072	90 aa		20.07	■□□□□ 0.8
TOM1-210	ENST00000449058	STOX1	Q6ZVD7	989 aa		20.07	■□□□□ 0.8
TOM1-210	ENST00000449058	DSCC1	Q9BVC3	393 aa		20.07	■□□□□ 0.8
TOM1-210	ENST00000449058	SCAND2P	Q9GZW5	306 aa	Predicted RBP	20.07	■□□□□ 0.8
TOM1-210	ENST00000449058	TOGARAM1	Q9Y4F4	1720 aa		20.06	■□□□□ 0.8
TOM1-210	ENST00000449058	PTMA	P06454	111 aa	Known RBP	20.06	■□□□□ 0.8
TOM1-210	ENST00000449058	IL2RB	P14784	551 aa		20.06	■□□□□ 0.8
TOM1-210	ENST00000449058	ZMYM1	Q5SVZ6	1142 aa		20.06	■□□□□ 0.8
TOM1-210	ENST00000449058	CARD10	Q9BWT7	1032 aa		20.06	■□□□□ 0.8
TOM1-210	ENST00000449058	SOS2	Q07890	1332 aa	Predicted RBP	20.06	■□□□□ 0.8
TOM1-210	ENST00000449058	JAK2	O60674	1132 aa		20.06	■□□□□ 0.8
TOM1-210	ENST00000449058	HMGB1	P09429	215 aa	Known RBP	20.06	■□□□□ 0.8
TOM1-210	ENST00000449058	LRRC24	Q50LG9	513 aa		20.06	■□□□□ 0.8
TOM1-210	ENST00000449058	KDM4A	O75164	1064 aa		20.05	■□□□□ 0.8
TOM1-210	ENST00000449058	CCDC9	Q9Y3X0	531 aa	Known RBP	20.05	■□□□□ 0.8
TOM1-210	ENST00000449058	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	20.05	■□□□□ 0.8
TOM1-210	ENST00000449058	KDM4F	A0A1W2PPD8	638 aa		20.05	■□□□□ 0.8
TOM1-210	ENST00000449058	ADCY5	O95622	1261 aa		20.05	■□□□□ 0.8
TOM1-210	ENST00000449058	ISCA1	Q9BUE6	129 aa		20.05	■□□□□ 0.8
TOM1-210	ENST00000449058	ZNF594	Q96JF6	807 aa	Predicted RBP	20.04	■□□□□ 0.8
TOM1-210	ENST00000449058	MYH15	Q9Y2K3	1946 aa		20.04	■□□□□ 0.8
TOM1-210	ENST00000449058	LIG1	P18858	919 aa		20.03	■□□□□ 0.8
TOM1-210	ENST00000449058	DHX32	Q7L7V1	743 aa	Known RBP	20.03	■□□□□ 0.8
TOM1-210	ENST00000449058	SMARCC2	Q8TAQ2	1214 aa		20.03	■□□□□ 0.8
TOM1-210	ENST00000449058	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	20.03	■□□□□ 0.8	4e-7	■□□□□ 9.1
TOM1-210	ENST00000449058	LEO1	Q8WVC0	666 aa	Predicted RBP	20.03	■□□□□ 0.8
TOM1-210	ENST00000449058	BRF1	Q92994	677 aa		20.03	■□□□□ 0.8
TOM1-210	ENST00000449058	SPATA32	Q96LK8	384 aa		20.03	■□□□□ 0.8
TOM1-210	ENST00000449058		A0A1B0GUL7	405 aa		20.03	■□□□□ 0.8
TOM1-210	ENST00000449058	PFKFB2	O60825	505 aa		20.03	■□□□□ 0.8
TOM1-210	ENST00000449058	REST	Q13127	1097 aa		20.03	■□□□□ 0.8
TOM1-210	ENST00000449058	SLFNL1	Q499Z3	407 aa		20.03	■□□□□ 0.8
TOM1-210	ENST00000449058	LLPH	Q9BRT6	129 aa	Known RBP	20.03	■□□□□ 0.8
TOM1-210	ENST00000449058	AGXT2	Q9BYV1	514 aa		20.03	■□□□□ 0.8
TOM1-210	ENST00000449058	CCDC192	P0DO97	292 aa		20.02	■□□□□ 0.8
TOM1-210	ENST00000449058	HSP90B1	P14625	803 aa	Known RBP	20.02	■□□□□ 0.8
TOM1-210	ENST00000449058	SCRN1	Q12765	414 aa		20.02	■□□□□ 0.8
TOM1-210	ENST00000449058	IFIT1	P09914	478 aa	Known RBP	20.02	■□□□□ 0.8
TOM1-210	ENST00000449058	EXOSC10	Q01780	885 aa	Known RBP	20.02	■□□□□ 0.8
TOM1-210	ENST00000449058	NUP62CL	Q9H1M0	184 aa		20.02	■□□□□ 0.8
TOM1-210	ENST00000449058	TFIP11	Q9UBB9	837 aa	Known RBP	20.02	■□□□□ 0.8
TOM1-210	ENST00000449058	RNF113A	O15541	343 aa	Known RBP	20.01	■□□□□ 0.79
TOM1-210	ENST00000449058	PUS3	Q9BZE2	481 aa	Known RBP	20.01	■□□□□ 0.79
TOM1-210	ENST00000449058	MAST3	O60307	1309 aa		20.01	■□□□□ 0.79
TOM1-210	ENST00000449058	HSPD1	P10809	573 aa	Known RBP	20.01	■□□□□ 0.79
TOM1-210	ENST00000449058	TRIM28	Q13263	835 aa	Known RBP	20.01	■□□□□ 0.79
TOM1-210	ENST00000449058	TCIRG1	Q13488	830 aa		20.01	■□□□□ 0.79
TOM1-210	ENST00000449058	MAP3K11	Q16584	847 aa		20.01	■□□□□ 0.79
TOM1-210	ENST00000449058	LRRC2	Q9BYS8	371 aa		20.01	■□□□□ 0.79
TOM1-210	ENST00000449058	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	20	■□□□□ 0.79
TOM1-210	ENST00000449058	FBXO3	Q9UK99	471 aa		20	■□□□□ 0.79
TOM1-210	ENST00000449058	HSPA2	P54652	639 aa		20	■□□□□ 0.79
TOM1-210	ENST00000449058	KIAA2012	Q0VF49	1180 aa		20	■□□□□ 0.79
TOM1-210	ENST00000449058	RBM43	Q6ZSC3	357 aa	Known RBP	19.99	■□□□□ 0.79
TOM1-210	ENST00000449058	NSUN7	Q8NE18	718 aa	Known RBP	19.99	■□□□□ 0.79
TOM1-210	ENST00000449058	DDX19A	Q9NUU7	478 aa	Known RBP	19.99	■□□□□ 0.79
TOM1-210	ENST00000449058	CEP126	Q9P2H0	1117 aa		19.99	■□□□□ 0.79
TOM1-210	ENST00000449058		E7EWF7	191 aa		19.99	■□□□□ 0.79
TOM1-210	ENST00000449058	AP5Z1	O43299	807 aa		19.99	■□□□□ 0.79
TOM1-210	ENST00000449058	DACT1	Q9NYF0	836 aa		19.99	■□□□□ 0.79
TOM1-210	ENST00000449058	R3HCC1	Q9Y3T6	440 aa	Known RBP	19.99	■□□□□ 0.79
TOM1-210	ENST00000449058	GOLGA6L4	A6NEF3	574 aa		19.98	■□□□□ 0.79
TOM1-210	ENST00000449058	FGD1	P98174	961 aa		19.98	■□□□□ 0.79
TOM1-210	ENST00000449058	DDX11	Q96FC9	970 aa		19.98	■□□□□ 0.79
TOM1-210	ENST00000449058	PGBD1	Q96JS3	809 aa		19.98	■□□□□ 0.79
TOM1-210	ENST00000449058		H3BQV1	296 aa		19.98	■□□□□ 0.79
TOM1-210	ENST00000449058	CTDNEP1	O95476	244 aa		19.98	■□□□□ 0.79
TOM1-210	ENST00000449058	CCDC57	Q2TAC2	916 aa		19.98	■□□□□ 0.79
TOM1-210	ENST00000449058	IFFO2	Q5TF58	517 aa		19.98	■□□□□ 0.79
TOM1-210	ENST00000449058	NAA16	Q6N069	864 aa	Predicted RBP	19.98	■□□□□ 0.79
TOM1-210	ENST00000449058	PLA2G12B	Q9BX93	195 aa		19.98	■□□□□ 0.79
TOM1-210	ENST00000449058	SLAIN2	Q9P270	581 aa		19.98	■□□□□ 0.79
TOM1-210	ENST00000449058	MRVI1	Q9Y6F6	885 aa		19.98	■□□□□ 0.79
TOM1-210	ENST00000449058	NWD2	Q9ULI1	1742 aa		19.97	■□□□□ 0.79
TOM1-210	ENST00000449058		A0A0G2JLW4	131 aa		19.97	■□□□□ 0.79
TOM1-210	ENST00000449058	TYRO3	Q06418	890 aa		19.97	■□□□□ 0.79
TOM1-210	ENST00000449058	APOBR	Q0VD83	1088 aa		19.97	■□□□□ 0.79
TOM1-210	ENST00000449058	FAM200A	Q8TCP9	573 aa		19.97	■□□□□ 0.79
TOM1-210	ENST00000449058	CLSTN2	Q9H4D0	955 aa		19.97	■□□□□ 0.79
TOM1-210	ENST00000449058		M0R2C6	588 aa		19.97	■□□□□ 0.79
TOM1-210	ENST00000449058	PCCA	P05165	728 aa	Predicted RBP	19.97	■□□□□ 0.79
TOM1-210	ENST00000449058	CAMK4	Q16566	473 aa		19.97	■□□□□ 0.79
TOM1-210	ENST00000449058	TNMD	Q9H2S6	317 aa		19.97	■□□□□ 0.79
TOM1-210	ENST00000449058	TMOD3	Q9NYL9	352 aa		19.97	■□□□□ 0.79
TOM1-210	ENST00000449058	AKAP2	Q9Y2D5	859 aa		19.97	■□□□□ 0.79
TOM1-210	ENST00000449058	HMGN5	P82970	282 aa	Known RBP	19.96	■□□□□ 0.79
TOM1-210	ENST00000449058	VSIG10	Q8N0Z9	540 aa		19.96	■□□□□ 0.79
TOM1-210	ENST00000449058	OSBP2	Q969R2	916 aa		19.96	■□□□□ 0.79
TOM1-210	ENST00000449058	SALL1	Q9NSC2	1324 aa		19.96	■□□□□ 0.79
TOM1-210	ENST00000449058	CSF1R	P07333	972 aa		19.95	■□□□□ 0.78
TOM1-210	ENST00000449058	FBXL16	Q8N461	479 aa		19.95	■□□□□ 0.78

Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms