RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 PPP4R3BQ5MIZ7 849 aa9.67□□□□□ -0.86
HDAC9-216ENST00000446646 USP48Q86UV5 1035 aa9.67□□□□□ -0.86
HDAC9-216ENST00000446646 NBPF5PQ86XG9 351 aaPredicted RBP9.67□□□□□ -0.86
HDAC9-216ENST00000446646 GCC1Q96CN9 775 aa9.67□□□□□ -0.86
HDAC9-216ENST00000446646 CSRNP1Q96S65 589 aa9.67□□□□□ -0.86
HDAC9-216ENST00000446646 ADARB2Q9NS39 739 aaKnown RBP9.67□□□□□ -0.86
HDAC9-216ENST00000446646 SAGE1Q9NXZ1 904 aa9.67□□□□□ -0.86
HDAC9-216ENST00000446646 PGAP2Q9UHJ9 254 aa9.67□□□□□ -0.86
HDAC9-216ENST00000446646 TCERG1O14776 1098 aaKnown RBP9.66□□□□□ -0.86
HDAC9-216ENST00000446646 STARD3NLO95772 234 aa9.66□□□□□ -0.86
HDAC9-216ENST00000446646 LSM11P83369 360 aaKnown RBP eCLIP9.66□□□□□ -0.86
HDAC9-216ENST00000446646 LARGE2Q8N3Y3 721 aa9.66□□□□□ -0.86
HDAC9-216ENST00000446646 WDR70Q9NW82 654 aa9.66□□□□□ -0.86
HDAC9-216ENST00000446646 ABCC12Q96J65 1359 aa9.65□□□□□ -0.86
HDAC9-216ENST00000446646 PRAMEF22A3QJZ6 481 aa9.65□□□□□ -0.86
HDAC9-216ENST00000446646 KCNQ3O43525 872 aa9.65□□□□□ -0.86
HDAC9-216ENST00000446646 EGFRP00533 1210 aa9.65□□□□□ -0.86
HDAC9-216ENST00000446646 IL6STP40189 918 aaPredicted RBP9.65□□□□□ -0.86
HDAC9-216ENST00000446646 MAP3K9P80192 1104 aa9.65□□□□□ -0.86
HDAC9-216ENST00000446646 CXCL9Q07325 125 aa9.65□□□□□ -0.86
HDAC9-216ENST00000446646 PCGF6Q9BYE7 350 aa9.65□□□□□ -0.86
HDAC9-216ENST00000446646 NPC1L1Q9UHC9 1359 aa9.64□□□□□ -0.87
HDAC9-216ENST00000446646 IL13P35225 146 aa9.64□□□□□ -0.87
HDAC9-216ENST00000446646 AOC3Q16853 763 aa9.64□□□□□ -0.87
HDAC9-216ENST00000446646 RGMBQ6NW40 437 aa9.64□□□□□ -0.87
HDAC9-216ENST00000446646 POTEEQ6S8J3 1075 aa9.64□□□□□ -0.87
HDAC9-216ENST00000446646 DZIP3Q86Y13 1208 aaKnown RBP9.64□□□□□ -0.87
HDAC9-216ENST00000446646 UBR2Q8IWV8 1755 aa9.64□□□□□ -0.87
HDAC9-216ENST00000446646 ADM5C9JUS6 153 aa9.63□□□□□ -0.87
HDAC9-216ENST00000446646 EVI5O60447 810 aa9.63□□□□□ -0.87
HDAC9-216ENST00000446646 ZNF157P51786 506 aaPredicted RBP9.63□□□□□ -0.87
HDAC9-216ENST00000446646 MTHFSDQ2M296 383 aaKnown RBP9.63□□□□□ -0.87
HDAC9-216ENST00000446646 NUTM1Q86Y26 1132 aa9.63□□□□□ -0.87
HDAC9-216ENST00000446646 ZNF296Q8WUU4 475 aaPredicted RBP9.63□□□□□ -0.87
HDAC9-216ENST00000446646 EMILIN3Q9NT22 766 aa9.63□□□□□ -0.87
HDAC9-216ENST00000446646 HEG1Q9ULI3 1381 aa9.63□□□□□ -0.87
HDAC9-216ENST00000446646 ARHGAP33O14559 1287 aa9.62□□□□□ -0.87
HDAC9-216ENST00000446646 PPIP5K2O43314 1243 aa9.62□□□□□ -0.87
HDAC9-216ENST00000446646 TBC1D8O95759 1140 aa9.62□□□□□ -0.87
HDAC9-216ENST00000446646 HLFQ16534 295 aa9.62□□□□□ -0.87
HDAC9-216ENST00000446646 CRY2Q49AN0 593 aa9.62□□□□□ -0.87
HDAC9-216ENST00000446646 CDC37L1Q7L3B6 337 aa9.62□□□□□ -0.87
HDAC9-216ENST00000446646 NIM1KQ8IY84 436 aa9.62□□□□□ -0.87
HDAC9-216ENST00000446646 ZNF454Q8N9F8 522 aa9.62□□□□□ -0.87
HDAC9-216ENST00000446646 R3HDMLQ9H3Y0 253 aa9.62□□□□□ -0.87
HDAC9-216ENST00000446646 NIP7Q9Y221 180 aaKnown RBP eCLIP9.62□□□□□ -0.87
HDAC9-216ENST00000446646 ASTN2O75129 1339 aaPredicted RBP9.61□□□□□ -0.87
HDAC9-216ENST00000446646 RAD17O75943 681 aa9.61□□□□□ -0.87
HDAC9-216ENST00000446646 SLC10A3P09131 477 aa9.61□□□□□ -0.87
HDAC9-216ENST00000446646 HMOX1P09601 288 aa9.61□□□□□ -0.87
HDAC9-216ENST00000446646 SAMD7Q7Z3H4 446 aa9.61□□□□□ -0.87
HDAC9-216ENST00000446646 KCNV2Q8TDN2 545 aa9.61□□□□□ -0.87
HDAC9-216ENST00000446646 GBA2Q9HCG7 927 aaPredicted RBP9.61□□□□□ -0.87
HDAC9-216ENST00000446646 USP16Q9Y5T5 823 aa9.61□□□□□ -0.87
HDAC9-216ENST00000446646 CLSPNQ9HAW4 1339 aa9.6□□□□□ -0.87
HDAC9-216ENST00000446646 YDJCA8MPS7 323 aa9.6□□□□□ -0.87
HDAC9-216ENST00000446646 NBPF26B4DH59 902 aa9.6□□□□□ -0.87
HDAC9-216ENST00000446646 ALDH1B1P30837 517 aa9.6□□□□□ -0.87
HDAC9-216ENST00000446646 NBPF10Q6P3W6 841 aaKnown RBP9.6□□□□□ -0.87
HDAC9-216ENST00000446646 ZNF790Q6PG37 636 aa9.6□□□□□ -0.87
HDAC9-216ENST00000446646 TTC5Q8N0Z6 440 aa9.6□□□□□ -0.87
HDAC9-216ENST00000446646 IL17REQ8NFR9 667 aa9.6□□□□□ -0.87
HDAC9-216ENST00000446646 PSEN2P49810 448 aa9.59□□□□□ -0.87
HDAC9-216ENST00000446646 TBC1D10BQ4KMP7 808 aaPredicted RBP9.59□□□□□ -0.87
HDAC9-216ENST00000446646 TPTE2Q6XPS3 522 aa9.59□□□□□ -0.87
HDAC9-216ENST00000446646 MOB2Q70IA6 237 aa9.59□□□□□ -0.87
HDAC9-216ENST00000446646 KRT26Q7Z3Y9 468 aa9.59□□□□□ -0.87
HDAC9-216ENST00000446646 RASAL3Q86YV0 1011 aa9.59□□□□□ -0.87
HDAC9-216ENST00000446646 SLC17A8Q8NDX2 589 aa9.59□□□□□ -0.87
HDAC9-216ENST00000446646 ZC3H15Q8WU90 426 aaKnown RBP9.59□□□□□ -0.87
HDAC9-216ENST00000446646 CCDC102AQ96A19 550 aa9.59□□□□□ -0.87
HDAC9-216ENST00000446646 KCNK17Q96T54 332 aa9.59□□□□□ -0.87
HDAC9-216ENST00000446646 CNOT7Q9UIV1 285 aaKnown RBP9.59□□□□□ -0.87
HDAC9-216ENST00000446646 ZNRF3Q9ULT6 936 aa9.59□□□□□ -0.87
HDAC9-216ENST00000446646 EYSQ5T1H1 3165 aa9.58□□□□□ -0.88
HDAC9-216ENST00000446646 PPEF1O14829 653 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-216ENST00000446646 EN2P19622 333 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-216ENST00000446646 FBXO46Q6PJ61 603 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-216ENST00000446646 CLEC4GQ6UXB4 293 aa9.58□□□□□ -0.88
HDAC9-216ENST00000446646 RNF166Q96A37 237 aaPredicted RBP9.58□□□□□ -0.88
HDAC9-216ENST00000446646 HDAC9Q9UKV0 1011 aa9.58□□□□□ -0.88
HDAC9-216ENST00000446646 MUC3AQ02505 3323 aa9.58□□□□□ -0.88
HDAC9-216ENST00000446646 HOXA10P31260 410 aaPredicted RBP9.57□□□□□ -0.88
HDAC9-216ENST00000446646 CAMK2BQ13554 666 aa9.57□□□□□ -0.88
HDAC9-216ENST00000446646 PKN2Q16513 984 aaKnown RBP9.57□□□□□ -0.88
HDAC9-216ENST00000446646 C2orf69Q8N8R5 385 aa9.57□□□□□ -0.88
HDAC9-216ENST00000446646 BCL2L13Q9BXK5 485 aa9.57□□□□□ -0.88
HDAC9-216ENST00000446646 SCAF8Q9UPN6 1271 aaKnown RBP9.57□□□□□ -0.88
HDAC9-216ENST00000446646 AKAP11Q9UKA4 1901 aa9.56□□□□□ -0.88
HDAC9-216ENST00000446646 POLR2AP24928 1970 aaKnown RBP9.56□□□□□ -0.88
HDAC9-216ENST00000446646 GPR25O00155 361 aa9.56□□□□□ -0.88
HDAC9-216ENST00000446646 DPYSL4O14531 572 aa9.56□□□□□ -0.88
HDAC9-216ENST00000446646 FOSBP53539 338 aa9.56□□□□□ -0.88
HDAC9-216ENST00000446646 CAP1Q01518 475 aa9.56□□□□□ -0.88
HDAC9-216ENST00000446646 RBM26Q5T8P6 1007 aaKnown RBP9.56□□□□□ -0.88
HDAC9-216ENST00000446646 DMRTA1Q5VZB9 504 aa9.56□□□□□ -0.88
HDAC9-216ENST00000446646 CC2D2BQ6DHV5 1058 aa9.56□□□□□ -0.88
HDAC9-216ENST00000446646 KCNQ5Q9NR82 932 aa9.56□□□□□ -0.88
HDAC9-216ENST00000446646 H0YGN5 161 aa9.55□□□□□ -0.88
HDAC9-216ENST00000446646 ADGRD1Q6QNK2 874 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms