RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 UBTFL1P0CB47 393 aaPredicted RBP23.45■■□□□ 1.34
SHH-204ENST00000441114 NIM1KQ8IY84 436 aa23.45■■□□□ 1.34
SHH-204ENST00000441114 RRAGCQ9HB90 399 aa23.45■■□□□ 1.34
SHH-204ENST00000441114 MINPP1Q9UNW1 487 aa23.45■■□□□ 1.34
SHH-204ENST00000441114 UFL1O94874 794 aa23.44■■□□□ 1.34
SHH-204ENST00000441114 TBC1D16Q8TBP0 767 aa23.44■■□□□ 1.34
SHH-204ENST00000441114 LTBP1Q14766 1721 aa23.44■■□□□ 1.34
SHH-204ENST00000441114 ZNF541Q9H0D2 1346 aa23.43■■□□□ 1.34
SHH-204ENST00000441114 DDNO94850 711 aaPredicted RBP23.43■■□□□ 1.34
SHH-204ENST00000441114 WASHC4Q2M389 1173 aa23.43■■□□□ 1.34
SHH-204ENST00000441114 ANKRD44Q8N8A2 993 aa23.43■■□□□ 1.34
SHH-204ENST00000441114 MEIS3Q99687 375 aa23.43■■□□□ 1.34
SHH-204ENST00000441114 VPS33BQ9H267 617 aa23.43■■□□□ 1.34
SHH-204ENST00000441114 GGA1Q9UJY5 639 aa23.43■■□□□ 1.34
SHH-204ENST00000441114 RCAN3Q9UKA8 241 aa23.43■■□□□ 1.34
SHH-204ENST00000441114 XDHP47989 1333 aa23.42■■□□□ 1.34
SHH-204ENST00000441114 FZD9O00144 591 aa23.42■■□□□ 1.34
SHH-204ENST00000441114 KIAA2012Q0VF49 1180 aa23.42■■□□□ 1.34
SHH-204ENST00000441114 FTSJ3Q8IY81 847 aaKnown RBP23.42■■□□□ 1.34
SHH-204ENST00000441114 TMEM57Q8N5G2 664 aa23.42■■□□□ 1.34
SHH-204ENST00000441114 EYA3Q99504 573 aa23.42■■□□□ 1.34
SHH-204ENST00000441114 PODXL2Q9NZ53 605 aa23.42■■□□□ 1.34
SHH-204ENST00000441114 EIF6P56537 245 aaKnown RBP23.41■■□□□ 1.34
SHH-204ENST00000441114 WTIPA6NIX2 430 aaPredicted RBP23.4■■□□□ 1.34
SHH-204ENST00000441114 ATP2B4P23634 1241 aa23.4■■□□□ 1.34
SHH-204ENST00000441114 RABL6Q3YEC7 729 aaPredicted RBP23.4■■□□□ 1.34
SHH-204ENST00000441114 LDHAL6AQ6ZMR3 332 aa23.4■■□□□ 1.34
SHH-204ENST00000441114 DZIP1LQ8IYY4 767 aaKnown RBP23.4■■□□□ 1.34
SHH-204ENST00000441114 ZC3H12CQ9C0D7 883 aaKnown RBP23.4■■□□□ 1.34
SHH-204ENST00000441114 CNNM1Q9NRU3 951 aa23.4■■□□□ 1.34
SHH-204ENST00000441114 LRRFIP2Q9Y608 721 aaKnown RBP23.4■■□□□ 1.34
SHH-204ENST00000441114 GJA3Q9Y6H8 435 aa23.4■■□□□ 1.34
SHH-204ENST00000441114 CHRNDQ07001 517 aa23.39■■□□□ 1.33
SHH-204ENST00000441114 DOK7Q18PE1 504 aa23.39■■□□□ 1.33
SHH-204ENST00000441114 HELBQ8NG08 1087 aaPredicted RBP23.39■■□□□ 1.33
SHH-204ENST00000441114 G3V3G9 751 aa23.38■■□□□ 1.33
SHH-204ENST00000441114 KIF3CO14782 793 aa23.38■■□□□ 1.33
SHH-204ENST00000441114 PLIN1O60240 522 aa23.38■■□□□ 1.33
SHH-204ENST00000441114 GNAI3P08754 354 aa23.38■■□□□ 1.33
SHH-204ENST00000441114 DCAF8Q5TAQ9 597 aa23.38■■□□□ 1.33
SHH-204ENST00000441114 ANKRD2Q9GZV1 360 aa23.38■■□□□ 1.33
SHH-204ENST00000441114 DBNDD1Q9H9R9 158 aa23.38■■□□□ 1.33
SHH-204ENST00000441114 ZNRF3Q9ULT6 936 aa23.38■■□□□ 1.33
SHH-204ENST00000441114 A0A1B0GUL6 1792 aa23.37■■□□□ 1.33
SHH-204ENST00000441114 RLBP1P12271 317 aa23.37■■□□□ 1.33
SHH-204ENST00000441114 PUS3Q9BZE2 481 aaKnown RBP23.37■■□□□ 1.33
SHH-204ENST00000441114 HDAC5Q9UQL6 1122 aa23.37■■□□□ 1.33
SHH-204ENST00000441114 WDR90Q96KV7 1748 aa23.36■■□□□ 1.33
SHH-204ENST00000441114 TAF5LO75529 589 aa23.36■■□□□ 1.33
SHH-204ENST00000441114 KCNJ4P48050 445 aa23.36■■□□□ 1.33
SHH-204ENST00000441114 ITPRIPQ8IWB1 547 aa23.36■■□□□ 1.33
SHH-204ENST00000441114 C16orf71Q8IYS4 520 aaPredicted RBP23.36■■□□□ 1.33
SHH-204ENST00000441114 KLHDC4Q8TBB5 520 aa23.36■■□□□ 1.33
SHH-204ENST00000441114 RAD17O75943 681 aa23.35■■□□□ 1.33
SHH-204ENST00000441114 VEGFAP15692 232 aaPredicted RBP23.35■■□□□ 1.33
SHH-204ENST00000441114 PANK1Q8TE04 598 aa23.35■■□□□ 1.33
SHH-204ENST00000441114 YDJCA8MPS7 323 aa23.34■■□□□ 1.33
SHH-204ENST00000441114 ECE2O60344 883 aa23.34■■□□□ 1.33
SHH-204ENST00000441114 CXCL9Q07325 125 aa23.34■■□□□ 1.33
SHH-204ENST00000441114 GPC2Q8N158 579 aa23.34■■□□□ 1.33
SHH-204ENST00000441114 LEMD3Q9Y2U8 911 aa23.34■■□□□ 1.33
SHH-204ENST00000441114 ZNF804BA4D1E1 1349 aa23.33■■□□□ 1.33
SHH-204ENST00000441114 POTECB2RU33 542 aa23.33■■□□□ 1.33
SHH-204ENST00000441114 SNAP23O00161 211 aa23.33■■□□□ 1.33
SHH-204ENST00000441114 CIAPIN1Q6FI81 312 aa23.33■■□□□ 1.33
SHH-204ENST00000441114 LRRC24Q50LG9 513 aa23.32■■□□□ 1.32
SHH-204ENST00000441114 GNAI2P04899 355 aa23.31■■□□□ 1.32
SHH-204ENST00000441114 KCNQ5Q9NR82 932 aa23.31■■□□□ 1.32
SHH-204ENST00000441114 SCN4AP35499 1836 aa23.31■■□□□ 1.32
SHH-204ENST00000441114 MED23Q9ULK4 1368 aa23.3■■□□□ 1.32
SHH-204ENST00000441114 MS4A1P11836 297 aa23.3■■□□□ 1.32
SHH-204ENST00000441114 KLRK1P26718 216 aa23.3■■□□□ 1.32
SHH-204ENST00000441114 RFX5P48382 616 aaPredicted RBP23.3■■□□□ 1.32
SHH-204ENST00000441114 TNIP1Q15025 636 aa23.3■■□□□ 1.32
SHH-204ENST00000441114 TXNRD3Q86VQ6 643 aa23.3■■□□□ 1.32
SHH-204ENST00000441114 L3MBTL3Q96JM7 780 aaPredicted RBP23.3■■□□□ 1.32
SHH-204ENST00000441114 RIPOR2Q9Y4F9 1068 aa23.3■■□□□ 1.32
SHH-204ENST00000441114 METTL24Q5JXM2 366 aa23.29■■□□□ 1.32
SHH-204ENST00000441114 SIL1Q9H173 461 aa23.29■■□□□ 1.32
SHH-204ENST00000441114 SCN9AQ15858 1988 aa23.29■■□□□ 1.32
SHH-204ENST00000441114 IQCA1LA6NCM1 817 aa23.28■■□□□ 1.32
SHH-204ENST00000441114 TOMM70O94826 608 aa23.28■■□□□ 1.32
SHH-204ENST00000441114 C1QTNF8P60827 252 aa23.28■■□□□ 1.32
SHH-204ENST00000441114 PTPN12Q05209 780 aaKnown RBP23.28■■□□□ 1.32
SHH-204ENST00000441114 C1orf115Q9H7X2 142 aa23.28■■□□□ 1.32
SHH-204ENST00000441114 HACL1Q9UJ83 578 aa23.28■■□□□ 1.32
SHH-204ENST00000441114 MROH5Q6ZUA9 1318 aa23.28■■□□□ 1.32
SHH-204ENST00000441114 PSMD14O00487 310 aa23.27■■□□□ 1.32
SHH-204ENST00000441114 ZBTB7BO15156 539 aaPredicted RBP23.27■■□□□ 1.32
SHH-204ENST00000441114 SRGAP3O43295 1099 aa23.27■■□□□ 1.32
SHH-204ENST00000441114 LMOD1P29536 600 aaPredicted RBP23.27■■□□□ 1.32
SHH-204ENST00000441114 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.27■■□□□ 1.32
SHH-204ENST00000441114 PA2G4Q9UQ80 394 aaKnown RBP23.27■■□□□ 1.32
SHH-204ENST00000441114 GMPSP49915 693 aaPredicted RBP23.26■■□□□ 1.31
SHH-204ENST00000441114 FBXW7Q969H0 707 aa23.26■■□□□ 1.31
SHH-204ENST00000441114 TAF1DQ9H5J8 278 aaPredicted RBP23.26■■□□□ 1.31
SHH-204ENST00000441114 COG6Q9Y2V7 657 aa23.26■■□□□ 1.31
SHH-204ENST00000441114 ZBTB12Q9Y330 459 aaPredicted RBP23.26■■□□□ 1.31
SHH-204ENST00000441114 EYA2O00167 538 aa23.25■■□□□ 1.31
SHH-204ENST00000441114 SCNN1DP51172 638 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms