RNA–Protein interactions for RNA: ENST00000427778.1

LINC00963-204, long intergenic non-protein coding RNA 963, human

TSL 2

Gene LINC00963, Length 382 nt, Biotype lincRNA, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00963-204	ENST00000427778	HSP90B1	P14625	803 aa	Known RBP	11.31	□□□□□ -0.6
LINC00963-204	ENST00000427778	FLII	Q13045	1269 aa		11.31	□□□□□ -0.6
LINC00963-204	ENST00000427778	SF3B3	Q15393	1217 aa	Known RBP	11.31	□□□□□ -0.6
LINC00963-204	ENST00000427778	DIEXF	Q68CQ4	756 aa	Known RBP	11.31	□□□□□ -0.6
LINC00963-204	ENST00000427778	SYNE4	Q8N205	404 aa		11.31	□□□□□ -0.6
LINC00963-204	ENST00000427778	PI4KAP1	Q8N8J0	262 aa		11.31	□□□□□ -0.6
LINC00963-204	ENST00000427778	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.31	□□□□□ -0.6
LINC00963-204	ENST00000427778	PSMD1	Q99460	953 aa		11.31	□□□□□ -0.6
LINC00963-204	ENST00000427778	MAP3K2	Q9Y2U5	619 aa		11.31	□□□□□ -0.6
LINC00963-204	ENST00000427778	ABCC4	O15439	1325 aa		11.31	□□□□□ -0.6
LINC00963-204	ENST00000427778	PASK	Q96RG2	1323 aa		11.31	□□□□□ -0.6
LINC00963-204	ENST00000427778	CASP8AP2	Q9UKL3	1982 aa		11.3	□□□□□ -0.6
LINC00963-204	ENST00000427778	PCCA	P05165	728 aa	Predicted RBP	11.3	□□□□□ -0.6
LINC00963-204	ENST00000427778	HCLS1	P14317	486 aa	Predicted RBP	11.3	□□□□□ -0.6
LINC00963-204	ENST00000427778	RGS19	P49795	217 aa		11.3	□□□□□ -0.6
LINC00963-204	ENST00000427778	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
LINC00963-204	ENST00000427778	G2E3	Q7L622	706 aa		11.3	□□□□□ -0.6
LINC00963-204	ENST00000427778	FAM89A	Q96GI7	184 aa		11.3	□□□□□ -0.6
LINC00963-204	ENST00000427778	CWC25	Q9NXE8	425 aa	Predicted RBP	11.3	□□□□□ -0.6
LINC00963-204	ENST00000427778	CDHR2	Q9BYE9	1310 aa		11.3	□□□□□ -0.6
LINC00963-204	ENST00000427778	TMEM88B	A6NKF7	163 aa		11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	PPEF1	O14829	653 aa	Predicted RBP	11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	BBOX1	O75936	387 aa		11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	IGKV5-2	P06315	115 aa		11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	PLCG2	P16885	1265 aa		11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	SLFN5	Q08AF3	891 aa		11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	NEXN	Q0ZGT2	675 aa		11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	TMC4	Q7Z404	712 aa		11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	TRMT2A	Q8IZ69	625 aa	Known RBP	11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	ZNF428	Q96B54	188 aa		11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	MYD88	Q99836	296 aa		11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	ATP6V0A2	Q9Y487	856 aa		11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	COL4A1	P02462	1669 aa		11.29	□□□□□ -0.6
LINC00963-204	ENST00000427778	DUOX1	Q9NRD9	1551 aa		11.28	□□□□□ -0.6
LINC00963-204	ENST00000427778	IRS4	O14654	1257 aa	Predicted RBP	11.28	□□□□□ -0.6
LINC00963-204	ENST00000427778	TCERG1	O14776	1098 aa	Known RBP	11.28	□□□□□ -0.6
LINC00963-204	ENST00000427778	GRAP	Q13588	217 aa		11.28	□□□□□ -0.6
LINC00963-204	ENST00000427778	OLFM4	Q6UX06	510 aa		11.28	□□□□□ -0.6
LINC00963-204	ENST00000427778	DDX46	Q7L014	1031 aa	Known RBP	11.28	□□□□□ -0.6
LINC00963-204	ENST00000427778	LDHD	Q86WU2	507 aa		11.28	□□□□□ -0.6
LINC00963-204	ENST00000427778	GRAPL	Q8TC17	118 aa	Predicted RBP	11.28	□□□□□ -0.6
LINC00963-204	ENST00000427778	RTL9	Q8NET4	1388 aa		11.28	□□□□□ -0.6
LINC00963-204	ENST00000427778	COL4A5	P29400	1685 aa		11.27	□□□□□ -0.6
LINC00963-204	ENST00000427778	NEURL1B	A8MQ27	555 aa		11.27	□□□□□ -0.61
LINC00963-204	ENST00000427778	FKBP5	Q13451	457 aa	Predicted RBP	11.27	□□□□□ -0.61
LINC00963-204	ENST00000427778	SP8	Q8IXZ3	490 aa		11.27	□□□□□ -0.61
LINC00963-204	ENST00000427778	LINS1	Q8NG48	757 aa		11.27	□□□□□ -0.61
LINC00963-204	ENST00000427778	DNAAF4	Q8WXU2	420 aa		11.27	□□□□□ -0.61
LINC00963-204	ENST00000427778	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.27	□□□□□ -0.61
LINC00963-204	ENST00000427778	SPEF2	Q9C093	1822 aa		11.26	□□□□□ -0.61
LINC00963-204	ENST00000427778	IQCA1L	A6NCM1	817 aa		11.26	□□□□□ -0.61
LINC00963-204	ENST00000427778	PDE8A	O60658	829 aa		11.26	□□□□□ -0.61
LINC00963-204	ENST00000427778	DDN	O94850	711 aa	Predicted RBP	11.26	□□□□□ -0.61
LINC00963-204	ENST00000427778	CT47B1	P0C2W7	299 aa	Predicted RBP	11.26	□□□□□ -0.61
LINC00963-204	ENST00000427778	IARS	P41252	1262 aa	Known RBP	11.26	□□□□□ -0.61
LINC00963-204	ENST00000427778	MAP2K1	Q02750	393 aa	Predicted RBP	11.26	□□□□□ -0.61
LINC00963-204	ENST00000427778	VPS33B	Q9H267	617 aa		11.26	□□□□□ -0.61
LINC00963-204	ENST00000427778	RASSF10	A6NK89	507 aa		11.25	□□□□□ -0.61
LINC00963-204	ENST00000427778		H7C1W4	665 aa		11.25	□□□□□ -0.61
LINC00963-204	ENST00000427778	GCKR	Q14397	625 aa		11.25	□□□□□ -0.61
LINC00963-204	ENST00000427778	CWF19L2	Q2TBE0	894 aa	Known RBP	11.25	□□□□□ -0.61
LINC00963-204	ENST00000427778	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.25	□□□□□ -0.61
LINC00963-204	ENST00000427778	FZD9	O00144	591 aa		11.24	□□□□□ -0.61
LINC00963-204	ENST00000427778	CASP7	P55210	303 aa		11.24	□□□□□ -0.61
LINC00963-204	ENST00000427778	DEFB115	Q30KQ5	88 aa		11.24	□□□□□ -0.61
LINC00963-204	ENST00000427778	CCDC152	Q4G0S7	254 aa		11.24	□□□□□ -0.61
LINC00963-204	ENST00000427778	RTL5	Q5HYW3	569 aa	Predicted RBP	11.24	□□□□□ -0.61
LINC00963-204	ENST00000427778	PLCD3	Q8N3E9	789 aa		11.24	□□□□□ -0.61
LINC00963-204	ENST00000427778	CDCA7L	Q96GN5	454 aa		11.24	□□□□□ -0.61
LINC00963-204	ENST00000427778	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.24	□□□□□ -0.61
LINC00963-204	ENST00000427778	PLA2G12B	Q9BX93	195 aa		11.24	□□□□□ -0.61
LINC00963-204	ENST00000427778	TMX4	Q9H1E5	349 aa	Predicted RBP	11.24	□□□□□ -0.61
LINC00963-204	ENST00000427778	WDR33	Q9C0J8	1336 aa	Known RBP	11.24	□□□□□ -0.61
LINC00963-204	ENST00000427778		A0A1B0GUL6	1792 aa		11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	PSME4	Q14997	1843 aa		11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	CTSW	P56202	376 aa		11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	MMRN1	Q13201	1228 aa		11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	ALDH1L2	Q3SY69	923 aa		11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	BEND3	Q5T5X7	828 aa		11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	UBE3B	Q7Z3V4	1068 aa		11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	SLC51A	Q86UW1	340 aa		11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	SUPT20H	Q8NEM7	779 aa		11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	CELF1	Q92879	486 aa	Known RBP	11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	TMEM106C	Q9BVX2	250 aa		11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	PTPRC	P08575	1304 aa		11.23	□□□□□ -0.61
LINC00963-204	ENST00000427778	ITGBL1	O95965	494 aa	Predicted RBP	11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	BRPF1	P55201	1214 aa	Predicted RBP	11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	RPS8	P62241	208 aa	Known RBP	11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	EAPP	Q56P03	285 aa	Predicted RBP	11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	DPP8	Q6V1X1	898 aa	Predicted RBP	11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	MPND	Q8N594	471 aa		11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	MRPL50	Q8N5N7	158 aa	Known RBP	11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	TTLL11	Q8NHH1	800 aa		11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	JDP2	Q8WYK2	163 aa		11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	SSH1	Q8WYL5	1049 aa		11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	BEGAIN	Q9BUH8	593 aa		11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	ABT1	Q9ULW3	272 aa	Known RBP	11.22	□□□□□ -0.61
LINC00963-204	ENST00000427778	ZNF541	Q9H0D2	1346 aa		11.21	□□□□□ -0.61
LINC00963-204	ENST00000427778		F6X3S4	739 aa		11.21	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms