RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 ATG9AQ7Z3C6 839 aa15.05■□□□□ -0
LINC00539-202ENST00000423575 CNNM1Q9NRU3 951 aa15.05■□□□□ -0
LINC00539-202ENST00000423575 MINPP1Q9UNW1 487 aa15.05■□□□□ -0
LINC00539-202ENST00000423575 RIPOR2Q9Y4F9 1068 aa15.05■□□□□ -0
LINC00539-202ENST00000423575 SPEF2Q9C093 1822 aa15.04■□□□□ -0
LINC00539-202ENST00000423575 HMMRO75330 724 aa15.04■□□□□ -0
LINC00539-202ENST00000423575 CIAO1O76071 339 aa15.04■□□□□ -0
LINC00539-202ENST00000423575 GPSM2P81274 684 aa15.04■□□□□ -0
LINC00539-202ENST00000423575 CHRNDQ07001 517 aa15.04■□□□□ -0
LINC00539-202ENST00000423575 SOGA3Q5TF21 947 aa15.04■□□□□ -0
LINC00539-202ENST00000423575 CC2D2BQ6DHV5 1058 aa15.04■□□□□ -0
LINC00539-202ENST00000423575 ARFGEF1Q9Y6D6 1849 aa15.03■□□□□ -0
LINC00539-202ENST00000423575 DUOX1Q9NRD9 1551 aa15.03■□□□□ -0
LINC00539-202ENST00000423575 NFKBIEO00221 500 aa15.03■□□□□ -0
LINC00539-202ENST00000423575 SURF6O75683 361 aaKnown RBP15.03■□□□□ -0
LINC00539-202ENST00000423575 HELBQ8NG08 1087 aaPredicted RBP15.03■□□□□ -0
LINC00539-202ENST00000423575 FBXO3Q9UK99 471 aa15.03■□□□□ -0
LINC00539-202ENST00000423575 NOP58Q9Y2X3 529 aaKnown RBP15.03■□□□□ -0
LINC00539-202ENST00000423575 XDHP47989 1333 aa15.02■□□□□ -0
LINC00539-202ENST00000423575 MROH5Q6ZUA9 1318 aa15.02■□□□□ -0
LINC00539-202ENST00000423575 DPP8Q6V1X1 898 aaPredicted RBP15.02■□□□□ -0
LINC00539-202ENST00000423575 RTKN2Q8IZC4 609 aa15.02■□□□□ -0
LINC00539-202ENST00000423575 MPNDQ8N594 471 aa15.02■□□□□ -0
LINC00539-202ENST00000423575 VGLL2Q8N8G2 317 aa15.02■□□□□ -0
LINC00539-202ENST00000423575 TMX4Q9H1E5 349 aaPredicted RBP15.02■□□□□ -0
LINC00539-202ENST00000423575 PODXL2Q9NZ53 605 aa15.02■□□□□ -0
LINC00539-202ENST00000423575 NSFL1CQ9UNZ2 370 aaKnown RBP15.02■□□□□ -0
LINC00539-202ENST00000423575 EXOC6BQ9Y2D4 811 aa15.02■□□□□ -0
LINC00539-202ENST00000423575 LTBP1Q14766 1721 aa15.02□□□□□ -0.01
LINC00539-202ENST00000423575 WTIPA6NIX2 430 aaPredicted RBP15.01□□□□□ -0.01
LINC00539-202ENST00000423575 TAF5LO75529 589 aa15.01□□□□□ -0.01
LINC00539-202ENST00000423575 IL15P40933 162 aaPredicted RBP15.01□□□□□ -0.01
LINC00539-202ENST00000423575 RASSF7Q02833 373 aa15.01□□□□□ -0.01
LINC00539-202ENST00000423575 METTL24Q5JXM2 366 aa15.01□□□□□ -0.01
LINC00539-202ENST00000423575 ARHGAP27Q6ZUM4 889 aa15.01□□□□□ -0.01
LINC00539-202ENST00000423575 ANKRD2Q9GZV1 360 aa15.01□□□□□ -0.01
LINC00539-202ENST00000423575 ANKIB1Q9P2G1 1089 aa15.01□□□□□ -0.01
LINC00539-202ENST00000423575 POLLQ9UGP5 575 aa15.01□□□□□ -0.01
LINC00539-202ENST00000423575 UTRNP46939 3433 aa15□□□□□ -0.01
LINC00539-202ENST00000423575 SNAP23O00161 211 aa15□□□□□ -0.01
LINC00539-202ENST00000423575 UFL1O94874 794 aa15□□□□□ -0.01
LINC00539-202ENST00000423575 FKBP4Q02790 459 aaKnown RBP eCLIP15□□□□□ -0.01
LINC00539-202ENST00000423575 G3BP1Q13283 466 aaKnown RBP eCLIP15□□□□□ -0.01
LINC00539-202ENST00000423575 HDAC1Q13547 482 aaPredicted RBP15□□□□□ -0.01
LINC00539-202ENST00000423575 GRIPAP1Q4V328 841 aa15□□□□□ -0.01
LINC00539-202ENST00000423575 TBC1D16Q8TBP0 767 aa15□□□□□ -0.01
LINC00539-202ENST00000423575 GPR101Q96P66 508 aaPredicted RBP15□□□□□ -0.01
LINC00539-202ENST00000423575 PSMD1Q99460 953 aa15□□□□□ -0.01
LINC00539-202ENST00000423575 RTFDC1Q9BY42 306 aaPredicted RBP15□□□□□ -0.01
LINC00539-202ENST00000423575 TAOK3Q9H2K8 898 aa15□□□□□ -0.01
LINC00539-202ENST00000423575 GGA1Q9UJY5 639 aa15□□□□□ -0.01
LINC00539-202ENST00000423575 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15□□□□□ -0.01
LINC00539-202ENST00000423575 LTBP3Q9NS15 1303 aa14.99□□□□□ -0.01
LINC00539-202ENST00000423575 GRIN3BO60391 1043 aa14.99□□□□□ -0.01
LINC00539-202ENST00000423575 SASH1O94885 1247 aa14.99□□□□□ -0.01
LINC00539-202ENST00000423575 ATP2B4P23634 1241 aa14.99□□□□□ -0.01
LINC00539-202ENST00000423575 PRELPP51888 382 aa14.99□□□□□ -0.01
LINC00539-202ENST00000423575 OS9Q13438 667 aaPredicted RBP14.99□□□□□ -0.01
LINC00539-202ENST00000423575 CEP126Q9P2H0 1117 aa14.99□□□□□ -0.01
LINC00539-202ENST00000423575 A0A1B0GUL6 1792 aa14.98□□□□□ -0.01
LINC00539-202ENST00000423575 C6orf229H3BNL8 230 aa14.98□□□□□ -0.01
LINC00539-202ENST00000423575 PDE8BO95263 885 aa14.98□□□□□ -0.01
LINC00539-202ENST00000423575 KLRK1P26718 216 aa14.98□□□□□ -0.01
LINC00539-202ENST00000423575 TFCP2Q12800 502 aa14.98□□□□□ -0.01
LINC00539-202ENST00000423575 DCTPP1Q9H773 170 aa14.98□□□□□ -0.01
LINC00539-202ENST00000423575 ZNF277Q9NRM2 450 aaPredicted RBP14.98□□□□□ -0.01
LINC00539-202ENST00000423575 LEMD3Q9Y2U8 911 aa14.98□□□□□ -0.01
LINC00539-202ENST00000423575 FER1L6Q2WGJ9 1857 aa14.97□□□□□ -0.01
LINC00539-202ENST00000423575 ZNF804BA4D1E1 1349 aa14.97□□□□□ -0.01
LINC00539-202ENST00000423575 IGHDP01880 384 aa14.97□□□□□ -0.01
LINC00539-202ENST00000423575 FGFR2P21802 821 aa14.97□□□□□ -0.01
LINC00539-202ENST00000423575 KCNJ4P48050 445 aa14.97□□□□□ -0.01
LINC00539-202ENST00000423575 PUM3Q15397 648 aaKnown RBP14.97□□□□□ -0.01
LINC00539-202ENST00000423575 HSP90AB4PQ58FF6 505 aa14.97□□□□□ -0.01
LINC00539-202ENST00000423575 SUPT20HQ8NEM7 779 aa14.97□□□□□ -0.01
LINC00539-202ENST00000423575 IRS2Q9Y4H2 1338 aa14.96□□□□□ -0.01
LINC00539-202ENST00000423575 APBB1O00213 710 aa14.96□□□□□ -0.01
LINC00539-202ENST00000423575 ZNF609O15014 1411 aa14.96□□□□□ -0.01
LINC00539-202ENST00000423575 UBE4AQ14139 1066 aa14.96□□□□□ -0.01
LINC00539-202ENST00000423575 ERC1Q8IUD2 1116 aa14.96□□□□□ -0.01
LINC00539-202ENST00000423575 RHPN1Q8TCX5 695 aa14.96□□□□□ -0.01
LINC00539-202ENST00000423575 RWDD1Q9H446 243 aaPredicted RBP14.96□□□□□ -0.01
LINC00539-202ENST00000423575 MED23Q9ULK4 1368 aa14.96□□□□□ -0.02
LINC00539-202ENST00000423575 PPIP5K2O43314 1243 aa14.95□□□□□ -0.02
LINC00539-202ENST00000423575 RAB11FIP3O75154 756 aa14.95□□□□□ -0.02
LINC00539-202ENST00000423575 KIAA2012Q0VF49 1180 aa14.95□□□□□ -0.02
LINC00539-202ENST00000423575 ATP2B3Q16720 1220 aa14.95□□□□□ -0.02
LINC00539-202ENST00000423575 AOC3Q16853 763 aa14.95□□□□□ -0.02
LINC00539-202ENST00000423575 TXNRD3Q86VQ6 643 aa14.95□□□□□ -0.02
LINC00539-202ENST00000423575 KIF1BPQ96EK5 621 aa14.95□□□□□ -0.02
LINC00539-202ENST00000423575 COL4A5P29400 1685 aa14.95□□□□□ -0.02
LINC00539-202ENST00000423575 DCAF8L1A6NGE4 600 aa14.94□□□□□ -0.02
LINC00539-202ENST00000423575 RIMBP2O15034 1052 aa14.94□□□□□ -0.02
LINC00539-202ENST00000423575 IARSP41252 1262 aaKnown RBP14.94□□□□□ -0.02
LINC00539-202ENST00000423575 WASHC4Q2M389 1173 aa14.94□□□□□ -0.02
LINC00539-202ENST00000423575 C15orf52Q6ZUT6 534 aaKnown RBP14.94□□□□□ -0.02
LINC00539-202ENST00000423575 LPIN2Q92539 896 aa14.94□□□□□ -0.02
LINC00539-202ENST00000423575 EYA3Q99504 573 aa14.94□□□□□ -0.02
LINC00539-202ENST00000423575 IL1RAPL2Q9NP60 686 aa14.94□□□□□ -0.02
LINC00539-202ENST00000423575 A0A1B0GUL7 405 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms