RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 BICDL1Q6ZP65 573 aa10.02□□□□□ -0.81
USP54-203ENST00000418501 TMC4Q7Z404 712 aa10.02□□□□□ -0.81
USP54-203ENST00000418501 RPGRQ92834 1020 aaKnown RBP10.02□□□□□ -0.81
USP54-203ENST00000418501 KAZALD1Q96I82 304 aa10.02□□□□□ -0.81
USP54-203ENST00000418501 DBNDD2Q9BQY9 259 aa10.02□□□□□ -0.81
USP54-203ENST00000418501 RTL9Q8NET4 1388 aa10.02□□□□□ -0.81
USP54-203ENST00000418501 XAGE2Q96GT9 111 aa10.02□□□□□ -0.81
USP54-203ENST00000418501 CCDC171Q6TFL3 1326 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 GOLIM4O00461 696 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 ONECUT3O60422 494 aaPredicted RBP10.01□□□□□ -0.81
USP54-203ENST00000418501 PDCP20941 246 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 RXRBP28702 533 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 HSPA4P34932 840 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 AMOTL1Q8IY63 956 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 ZGPATQ8N5A5 531 aaKnown RBP10.01□□□□□ -0.81
USP54-203ENST00000418501 ZNF512BQ96KM6 892 aaPredicted RBP10.01□□□□□ -0.81
USP54-203ENST00000418501 ATRNO75882 1429 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 UBR2Q8IWV8 1755 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 NRAPQ86VF7 1730 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 C5P01031 1676 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 VIRMAQ69YN4 1812 aaKnown RBP10.01□□□□□ -0.81
USP54-203ENST00000418501 IMMTQ16891 758 aaKnown RBP10.01□□□□□ -0.81
USP54-203ENST00000418501 SPTY2D1Q68D10 685 aaPredicted RBP10.01□□□□□ -0.81
USP54-203ENST00000418501 PDE8BO95263 885 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 SLC4A3P48751 1232 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 NMIQ13287 307 aaPredicted RBP10.01□□□□□ -0.81
USP54-203ENST00000418501 RALYLQ86SE5 291 aaKnown RBP10.01□□□□□ -0.81
USP54-203ENST00000418501 CCDC85AQ96PX6 553 aaPredicted RBP10.01□□□□□ -0.81
USP54-203ENST00000418501 PDRG1Q9NUG6 133 aa10.01□□□□□ -0.81
USP54-203ENST00000418501 GNAT2P19087 354 aa10□□□□□ -0.81
USP54-203ENST00000418501 ITPK1Q13572 414 aa10□□□□□ -0.81
USP54-203ENST00000418501 CNBD1Q8NA66 436 aa10□□□□□ -0.81
USP54-203ENST00000418501 KLHDC4Q8TBB5 520 aa10□□□□□ -0.81
USP54-203ENST00000418501 INTS4Q96HW7 963 aaKnown RBP10□□□□□ -0.81
USP54-203ENST00000418501 DBNLQ9UJU6 430 aaKnown RBP10□□□□□ -0.81
USP54-203ENST00000418501 SEMA3EO15041 775 aa10□□□□□ -0.81
USP54-203ENST00000418501 SUSD4Q5VX71 490 aa10□□□□□ -0.81
USP54-203ENST00000418501 CPLX2Q6PUV4 134 aaKnown RBP10□□□□□ -0.81
USP54-203ENST00000418501 UBE4AQ14139 1066 aa10□□□□□ -0.81
USP54-203ENST00000418501 KCNQ2O43526 872 aa10□□□□□ -0.81
USP54-203ENST00000418501 RBM17Q96I25 401 aaKnown RBP10□□□□□ -0.81
USP54-203ENST00000418501 DSCC1Q9BVC3 393 aa10□□□□□ -0.81
USP54-203ENST00000418501 GREM2Q9H772 168 aa10□□□□□ -0.81
USP54-203ENST00000418501 LIMCH1Q9UPQ0 1083 aa10□□□□□ -0.81
USP54-203ENST00000418501 CERS3Q8IU89 383 aa9.99□□□□□ -0.81
USP54-203ENST00000418501 JAKMIP1Q96N16 626 aaKnown RBP9.99□□□□□ -0.81
USP54-203ENST00000418501 SMC3Q9UQE7 1217 aa9.99□□□□□ -0.81
USP54-203ENST00000418501 DHX16O60231 1041 aaKnown RBP9.99□□□□□ -0.81
USP54-203ENST00000418501 SF3B3Q15393 1217 aaKnown RBP9.99□□□□□ -0.81
USP54-203ENST00000418501 PRPF40BQ6NWY9 871 aaKnown RBP9.99□□□□□ -0.81
USP54-203ENST00000418501 DENND2AQ9ULE3 1009 aa9.99□□□□□ -0.81
USP54-203ENST00000418501 CARMIL3Q8ND23 1372 aa9.99□□□□□ -0.81
USP54-203ENST00000418501 SLC3A2P08195 630 aaKnown RBP9.99□□□□□ -0.81
USP54-203ENST00000418501 HCLS1P14317 486 aaPredicted RBP9.99□□□□□ -0.81
USP54-203ENST00000418501 USPL1Q5W0Q7 1092 aa9.99□□□□□ -0.81
USP54-203ENST00000418501 ATG9AQ7Z3C6 839 aa9.99□□□□□ -0.81
USP54-203ENST00000418501 NLGN1Q8N2Q7 840 aa9.99□□□□□ -0.81
USP54-203ENST00000418501 SPRYD3Q8NCJ5 442 aa9.99□□□□□ -0.81
USP54-203ENST00000418501 UBE2Q2Q8WVN8 375 aa9.99□□□□□ -0.81
USP54-203ENST00000418501 ZNF594Q96JF6 807 aaPredicted RBP9.99□□□□□ -0.81
USP54-203ENST00000418501 RBM8AQ9Y5S9 174 aaKnown RBP9.99□□□□□ -0.81
USP54-203ENST00000418501 G3V3G9 751 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 SLC10A5Q5PT55 438 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 DCAF8Q5TAQ9 597 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 VPS53Q5VIR6 699 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 SLF2Q8IX21 1173 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 LINC00116Q8NCU8 138 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 APPBP2Q92624 585 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 AIDAQ96BJ3 306 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.98□□□□□ -0.81
USP54-203ENST00000418501 ARFGEF2Q9Y6D5 1785 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 APPP05067 770 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 TIMM10P62072 90 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 LRRC24Q50LG9 513 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 LRP2BPQ9P2M1 347 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 SYNE3Q6ZMZ3 975 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 SLC4A9Q96Q91 983 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 BSDC1Q9NW68 430 aaPredicted RBP9.98□□□□□ -0.81
USP54-203ENST00000418501 DOT1LQ8TEK3 1739 aa9.98□□□□□ -0.81
USP54-203ENST00000418501 CASTP20810 708 aaKnown RBP9.98□□□□□ -0.81
USP54-203ENST00000418501 SART3Q15020 963 aaKnown RBP9.98□□□□□ -0.81
USP54-203ENST00000418501 WNK3Q9BYP7 1800 aa9.97□□□□□ -0.81
USP54-203ENST00000418501 ZNF609O15014 1411 aa9.97□□□□□ -0.81
USP54-203ENST00000418501 IDH1O75874 414 aaKnown RBP9.97□□□□□ -0.81
USP54-203ENST00000418501 NTSR2O95665 410 aa9.97□□□□□ -0.81
USP54-203ENST00000418501 RPS8P62241 208 aaKnown RBP9.97□□□□□ -0.81
USP54-203ENST00000418501 GSTO1P78417 241 aa9.97□□□□□ -0.81
USP54-203ENST00000418501 SYAP1Q96A49 352 aaPredicted RBP9.97□□□□□ -0.81
USP54-203ENST00000418501 RIPOR2Q9Y4F9 1068 aa9.97□□□□□ -0.81
USP54-203ENST00000418501 AFDNP55196 1824 aaKnown RBP9.97□□□□□ -0.81
USP54-203ENST00000418501 PHF14O94880 888 aa9.97□□□□□ -0.81
USP54-203ENST00000418501 LDHCP07864 332 aa9.97□□□□□ -0.81
USP54-203ENST00000418501 ANP32BQ92688 251 aaKnown RBP9.97□□□□□ -0.81
USP54-203ENST00000418501 LSG1Q9H089 658 aaKnown RBP9.97□□□□□ -0.81
USP54-203ENST00000418501 WDR33Q9C0J8 1336 aaKnown RBP9.97□□□□□ -0.81
USP54-203ENST00000418501 CREB3L3Q68CJ9 461 aa9.97□□□□□ -0.81
USP54-203ENST00000418501 RNF41Q9H4P4 317 aaPredicted RBP9.97□□□□□ -0.81
USP54-203ENST00000418501 TFCP2L1Q9NZI6 479 aa9.97□□□□□ -0.81
USP54-203ENST00000418501 NT5C2P49902 561 aa9.96□□□□□ -0.81
USP54-203ENST00000418501 UBE3CQ15386 1083 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms