RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 NSFL1CQ9UNZ2 370 aaKnown RBP12.55□□□□□ -0.4
RFFL-203ENST00000413582 ASTN2O75129 1339 aaPredicted RBP12.55□□□□□ -0.4
RFFL-203ENST00000413582 RIMBP2O15034 1052 aa12.54□□□□□ -0.4
RFFL-203ENST00000413582 GPSM2P81274 684 aa12.54□□□□□ -0.4
RFFL-203ENST00000413582 SF3B3Q15393 1217 aaKnown RBP12.54□□□□□ -0.4
RFFL-203ENST00000413582 RBM26Q5T8P6 1007 aaKnown RBP12.54□□□□□ -0.4
RFFL-203ENST00000413582 RASAL3Q86YV0 1011 aa12.54□□□□□ -0.4
RFFL-203ENST00000413582 SULF1Q8IWU6 871 aa12.54□□□□□ -0.4
RFFL-203ENST00000413582 NECTIN2Q92692 538 aa12.54□□□□□ -0.4
RFFL-203ENST00000413582 CDCA5Q96FF9 252 aa12.54□□□□□ -0.4
RFFL-203ENST00000413582 CSRNP1Q96S65 589 aa12.54□□□□□ -0.4
RFFL-203ENST00000413582 BABAM1Q9NWV8 329 aa12.54□□□□□ -0.4
RFFL-203ENST00000413582 C6orf229H3BNL8 230 aa12.53□□□□□ -0.4
RFFL-203ENST00000413582 DOK7Q18PE1 504 aa12.53□□□□□ -0.4
RFFL-203ENST00000413582 EYA3Q99504 573 aa12.53□□□□□ -0.4
RFFL-203ENST00000413582 VIL1P09327 827 aaKnown RBP12.52□□□□□ -0.41
RFFL-203ENST00000413582 KRT24Q2M2I5 525 aa12.52□□□□□ -0.41
RFFL-203ENST00000413582 TBC1D16Q8TBP0 767 aa12.52□□□□□ -0.41
RFFL-203ENST00000413582 FAM89AQ96GI7 184 aa12.52□□□□□ -0.41
RFFL-203ENST00000413582 ISCA1Q9BUE6 129 aa12.52□□□□□ -0.41
RFFL-203ENST00000413582 PNNQ9H307 717 aaKnown RBP12.52□□□□□ -0.41
RFFL-203ENST00000413582 CHPF2Q9P2E5 772 aa12.52□□□□□ -0.41
RFFL-203ENST00000413582 RIPK4P57078 832 aa12.51□□□□□ -0.41
RFFL-203ENST00000413582 ZNF280AP59817 542 aaPredicted RBP12.51□□□□□ -0.41
RFFL-203ENST00000413582 REM2Q8IYK8 340 aaPredicted RBP12.51□□□□□ -0.41
RFFL-203ENST00000413582 PLBD2Q8NHP8 589 aa12.51□□□□□ -0.41
RFFL-203ENST00000413582 HPS5Q9UPZ3 1129 aa12.51□□□□□ -0.41
RFFL-203ENST00000413582 ZNF646O15015 1829 aaPredicted RBP12.51□□□□□ -0.41
RFFL-203ENST00000413582 FKBP1BP68106 108 aa12.5□□□□□ -0.41
RFFL-203ENST00000413582 ANGEL2Q5VTE6 544 aaKnown RBP12.5□□□□□ -0.41
RFFL-203ENST00000413582 PODXL2Q9NZ53 605 aa12.5□□□□□ -0.41
RFFL-203ENST00000413582 PITPNM2Q9BZ72 1349 aa12.49□□□□□ -0.41
RFFL-203ENST00000413582 ATP5J2-PTCD1G3V325 749 aa12.49□□□□□ -0.41
RFFL-203ENST00000413582 UFL1O94874 794 aa12.49□□□□□ -0.41
RFFL-203ENST00000413582 TMPOP42166 694 aaKnown RBP12.49□□□□□ -0.41
RFFL-203ENST00000413582 LMOD3Q0VAK6 560 aa12.49□□□□□ -0.41
RFFL-203ENST00000413582 CHL1O00533 1208 aa12.48□□□□□ -0.41
RFFL-203ENST00000413582 IRS4O14654 1257 aaPredicted RBP12.48□□□□□ -0.41
RFFL-203ENST00000413582 RPS8P62241 208 aaKnown RBP12.48□□□□□ -0.41
RFFL-203ENST00000413582 SCARF1Q14162 830 aa12.48□□□□□ -0.41
RFFL-203ENST00000413582 PKN2Q16513 984 aaKnown RBP12.48□□□□□ -0.41
RFFL-203ENST00000413582 RTL5Q5HYW3 569 aaPredicted RBP12.48□□□□□ -0.41
RFFL-203ENST00000413582 HDGFL1Q5TGJ6 251 aa12.48□□□□□ -0.41
RFFL-203ENST00000413582 RSBN1LQ6PCB5 846 aaPredicted RBP12.48□□□□□ -0.41
RFFL-203ENST00000413582 ANKRD13DQ6ZTN6 518 aa12.48□□□□□ -0.41
RFFL-203ENST00000413582 AGBL3Q8NEM8 1001 aa12.48□□□□□ -0.41
RFFL-203ENST00000413582 GMLQ99445 158 aa12.48□□□□□ -0.41
RFFL-203ENST00000413582 ZC3H12CQ9C0D7 883 aaKnown RBP12.48□□□□□ -0.41
RFFL-203ENST00000413582 HTTP42858 3142 aa12.48□□□□□ -0.41
RFFL-203ENST00000413582 TRIM28Q13263 835 aaKnown RBP12.47□□□□□ -0.41
RFFL-203ENST00000413582 MOB2Q70IA6 237 aa12.47□□□□□ -0.41
RFFL-203ENST00000413582 ZNF296Q8WUU4 475 aaPredicted RBP12.47□□□□□ -0.41
RFFL-203ENST00000413582 SEC31BQ9NQW1 1179 aa12.47□□□□□ -0.41
RFFL-203ENST00000413582 GGA1Q9UJY5 639 aa12.47□□□□□ -0.41
RFFL-203ENST00000413582 TBC1D8O95759 1140 aa12.46□□□□□ -0.41
RFFL-203ENST00000413582 HOXB7P09629 217 aa12.46□□□□□ -0.41
RFFL-203ENST00000413582 MYOZ2Q9NPC6 264 aa12.46□□□□□ -0.41
RFFL-203ENST00000413582 ANKIB1Q9P2G1 1089 aa12.46□□□□□ -0.41
RFFL-203ENST00000413582 DBF4Q9UBU7 674 aaPredicted RBP12.46□□□□□ -0.41
RFFL-203ENST00000413582 HDAC9Q9UKV0 1011 aa12.46□□□□□ -0.41
RFFL-203ENST00000413582 SCAF8Q9UPN6 1271 aaKnown RBP12.46□□□□□ -0.41
RFFL-203ENST00000413582 MKI67P46013 3256 aaKnown RBP12.45□□□□□ -0.42
RFFL-203ENST00000413582 KIAA0100Q14667 2235 aaKnown RBP12.45□□□□□ -0.42
RFFL-203ENST00000413582 G3V3G9 751 aa12.45□□□□□ -0.42
RFFL-203ENST00000413582 USP17L8P0C7I0 530 aa12.45□□□□□ -0.42
RFFL-203ENST00000413582 NOM1Q5C9Z4 860 aaKnown RBP12.45□□□□□ -0.42
RFFL-203ENST00000413582 DCAF8Q5TAQ9 597 aa12.45□□□□□ -0.42
RFFL-203ENST00000413582 ZBTB38Q8NAP3 1195 aaPredicted RBP12.45□□□□□ -0.42
RFFL-203ENST00000413582 SPEF2Q9C093 1822 aa12.45□□□□□ -0.42
RFFL-203ENST00000413582 UBE2Q2LH0YL09 131 aa12.44□□□□□ -0.42
RFFL-203ENST00000413582 GPR25O00155 361 aa12.44□□□□□ -0.42
RFFL-203ENST00000413582 HYPKQ9NX55 129 aa12.44□□□□□ -0.42
RFFL-203ENST00000413582 LAMB1P07942 1786 aa12.43□□□□□ -0.42
RFFL-203ENST00000413582 XDHP47989 1333 aa12.43□□□□□ -0.42
RFFL-203ENST00000413582 MYH3P11055 1940 aa12.43□□□□□ -0.42
RFFL-203ENST00000413582 TM4SF4P48230 202 aa12.43□□□□□ -0.42
RFFL-203ENST00000413582 PRAMEF18Q5VWM3 479 aa12.43□□□□□ -0.42
RFFL-203ENST00000413582 FBXO46Q6PJ61 603 aaPredicted RBP12.43□□□□□ -0.42
RFFL-203ENST00000413582 TRIM35Q9UPQ4 493 aa12.43□□□□□ -0.42
RFFL-203ENST00000413582 RBBP6Q7Z6E9 1792 aaKnown RBP12.43□□□□□ -0.42
RFFL-203ENST00000413582 USP17L3A6NCW0 530 aa12.42□□□□□ -0.42
RFFL-203ENST00000413582 USP17L4A6NCW7 530 aa12.42□□□□□ -0.42
RFFL-203ENST00000413582 NEUROD2Q15784 382 aa12.42□□□□□ -0.42
RFFL-203ENST00000413582 NBPF9Q3BBW0 867 aa12.42□□□□□ -0.42
RFFL-203ENST00000413582 CCDC152Q4G0S7 254 aa12.42□□□□□ -0.42
RFFL-203ENST00000413582 USP17L1Q7RTZ2 530 aa12.42□□□□□ -0.42
RFFL-203ENST00000413582 CFHR5Q9BXR6 569 aa12.42□□□□□ -0.42
RFFL-203ENST00000413582 LAS1LQ9Y4W2 734 aaKnown RBP12.42□□□□□ -0.42
RFFL-203ENST00000413582 MED23Q9ULK4 1368 aa12.42□□□□□ -0.42
RFFL-203ENST00000413582 PCCAP05165 728 aaPredicted RBP12.41□□□□□ -0.42
RFFL-203ENST00000413582 HSP90B1P14625 803 aaKnown RBP12.41□□□□□ -0.42
RFFL-203ENST00000413582 ATP2B4P23634 1241 aa12.41□□□□□ -0.42
RFFL-203ENST00000413582 GOLGA2Q08379 1002 aa12.41□□□□□ -0.42
RFFL-203ENST00000413582 MKRN3Q13064 507 aaKnown RBP12.41□□□□□ -0.42
RFFL-203ENST00000413582 TTLL12Q14166 644 aaPredicted RBP12.41□□□□□ -0.42
RFFL-203ENST00000413582 DUSP27Q5VZP5 1158 aa12.41□□□□□ -0.42
RFFL-203ENST00000413582 PODNQ7Z5L7 613 aa12.41□□□□□ -0.42
RFFL-203ENST00000413582 CCDC146Q8IYE0 955 aa12.41□□□□□ -0.42
RFFL-203ENST00000413582 CCDC85AQ96PX6 553 aaPredicted RBP12.41□□□□□ -0.42
RFFL-203ENST00000413582 R3HDMLQ9H3Y0 253 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms