RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 PLA2G12BQ9BX93 195 aa13.94□□□□□ -0.18
LINC00539-201ENST00000411525 RAB11FIP3O75154 756 aa13.93□□□□□ -0.18
LINC00539-201ENST00000411525 SURF6O75683 361 aaKnown RBP13.93□□□□□ -0.18
LINC00539-201ENST00000411525 DDNO94850 711 aaPredicted RBP13.93□□□□□ -0.18
LINC00539-201ENST00000411525 FKBP4Q02790 459 aaKnown RBP eCLIP13.93□□□□□ -0.18
LINC00539-201ENST00000411525 HSP90AB4PQ58FF6 505 aa13.93□□□□□ -0.18
LINC00539-201ENST00000411525 C7orf43Q8WVR3 580 aa13.93□□□□□ -0.18
LINC00539-201ENST00000411525 FAM89AQ96GI7 184 aa13.93□□□□□ -0.18
LINC00539-201ENST00000411525 NYXQ9GZU5 481 aa13.93□□□□□ -0.18
LINC00539-201ENST00000411525 CREBZFQ9NS37 354 aa13.93□□□□□ -0.18
LINC00539-201ENST00000411525 TRMT112Q9UI30 125 aaKnown RBP13.93□□□□□ -0.18
LINC00539-201ENST00000411525 NOP58Q9Y2X3 529 aaKnown RBP13.93□□□□□ -0.18
LINC00539-201ENST00000411525 APBB1O00213 710 aa13.92□□□□□ -0.18
LINC00539-201ENST00000411525 COL13A1Q5TAT6 717 aaPredicted RBP13.92□□□□□ -0.18
LINC00539-201ENST00000411525 SUSD4Q5VX71 490 aa13.92□□□□□ -0.18
LINC00539-201ENST00000411525 LMBR1LQ6UX01 489 aa13.92□□□□□ -0.18
LINC00539-201ENST00000411525 L3MBTL3Q96JM7 780 aaPredicted RBP13.92□□□□□ -0.18
LINC00539-201ENST00000411525 UTP14AQ9BVJ6 771 aaKnown RBP13.92□□□□□ -0.18
LINC00539-201ENST00000411525 LRRCC1Q9C099 1032 aa13.92□□□□□ -0.18
LINC00539-201ENST00000411525 SH3TC1Q8TE82 1336 aa13.91□□□□□ -0.18
LINC00539-201ENST00000411525 IRS4O14654 1257 aaPredicted RBP13.91□□□□□ -0.18
LINC00539-201ENST00000411525 SMARCA5O60264 1052 aaPredicted RBP13.91□□□□□ -0.18
LINC00539-201ENST00000411525 NTSR2O95665 410 aa13.91□□□□□ -0.18
LINC00539-201ENST00000411525 RFX5P48382 616 aaPredicted RBP13.91□□□□□ -0.18
LINC00539-201ENST00000411525 LDHDQ86WU2 507 aa13.91□□□□□ -0.18
LINC00539-201ENST00000411525 ERC1Q8IUD2 1116 aa13.91□□□□□ -0.18
LINC00539-201ENST00000411525 PA2G4Q9UQ80 394 aaKnown RBP13.91□□□□□ -0.18
LINC00539-201ENST00000411525 CHMP3Q9Y3E7 222 aa13.91□□□□□ -0.18
LINC00539-201ENST00000411525 CTSWP56202 376 aa13.9□□□□□ -0.18
LINC00539-201ENST00000411525 OS9Q13438 667 aaPredicted RBP13.9□□□□□ -0.18
LINC00539-201ENST00000411525 CC2D2BQ6DHV5 1058 aa13.9□□□□□ -0.18
LINC00539-201ENST00000411525 KIF1BPQ96EK5 621 aa13.9□□□□□ -0.18
LINC00539-201ENST00000411525 COPRSQ9NQ92 184 aa13.9□□□□□ -0.18
LINC00539-201ENST00000411525 FAM177BA6PVY3 158 aa13.89□□□□□ -0.19
LINC00539-201ENST00000411525 PDE8AO60658 829 aa13.89□□□□□ -0.19
LINC00539-201ENST00000411525 HSPA1AP0DMV8 641 aaKnown RBP13.89□□□□□ -0.19
LINC00539-201ENST00000411525 HSPA1BP0DMV9 641 aaKnown RBP13.89□□□□□ -0.19
LINC00539-201ENST00000411525 GRIPAP1Q4V328 841 aa13.89□□□□□ -0.19
LINC00539-201ENST00000411525 TNS4Q8IZW8 715 aa13.89□□□□□ -0.19
LINC00539-201ENST00000411525 SYNE4Q8N205 404 aa13.89□□□□□ -0.19
LINC00539-201ENST00000411525 RHPN1Q8TCX5 695 aa13.89□□□□□ -0.19
LINC00539-201ENST00000411525 CSF1RP07333 972 aa13.88□□□□□ -0.19
LINC00539-201ENST00000411525 HSP90B1P14625 803 aaKnown RBP13.88□□□□□ -0.19
LINC00539-201ENST00000411525 PTPN12Q05209 780 aaKnown RBP13.88□□□□□ -0.19
LINC00539-201ENST00000411525 G3BP1Q13283 466 aaKnown RBP eCLIP13.88□□□□□ -0.19
LINC00539-201ENST00000411525 FAM161AQ3B820 660 aa13.88□□□□□ -0.19
LINC00539-201ENST00000411525 JDP2Q8WYK2 163 aa13.88□□□□□ -0.19
LINC00539-201ENST00000411525 TAF1DQ9H5J8 278 aaPredicted RBP13.88□□□□□ -0.19
LINC00539-201ENST00000411525 ZNF277Q9NRM2 450 aaPredicted RBP13.88□□□□□ -0.19
LINC00539-201ENST00000411525 IARSP41252 1262 aaKnown RBP13.87□□□□□ -0.19
LINC00539-201ENST00000411525 CRY2Q49AN0 593 aa13.87□□□□□ -0.19
LINC00539-201ENST00000411525 PNMA8AQ86V59 439 aaPredicted RBP13.87□□□□□ -0.19
LINC00539-201ENST00000411525 KLHDC4Q8TBB5 520 aa13.87□□□□□ -0.19
LINC00539-201ENST00000411525 RPGRQ92834 1020 aaKnown RBP13.87□□□□□ -0.19
LINC00539-201ENST00000411525 PSMD1Q99460 953 aa13.87□□□□□ -0.19
LINC00539-201ENST00000411525 SIL1Q9H173 461 aa13.87□□□□□ -0.19
LINC00539-201ENST00000411525 HACL1Q9UJ83 578 aa13.87□□□□□ -0.19
LINC00539-201ENST00000411525 ABCC12Q96J65 1359 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 FZD9O00144 591 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 POTEIP0CG38 1075 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 POTEJP0CG39 1038 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 CCDC57Q2TAC2 916 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 NUTM1Q86Y26 1132 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 PLEKHM2Q8IWE5 1019 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 GPC2Q8N158 579 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 TTLL11Q8NHH1 800 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 OTUD7AQ8TE49 926 aaPredicted RBP13.86□□□□□ -0.19
LINC00539-201ENST00000411525 BCL11AQ9H165 835 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 IL1RAPL2Q9NP60 686 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 RIC1Q4ADV7 1423 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 PASKQ96RG2 1323 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 SALL3Q9BXA9 1300 aa13.86□□□□□ -0.19
LINC00539-201ENST00000411525 RTL9Q8NET4 1388 aa13.85□□□□□ -0.19
LINC00539-201ENST00000411525 TMEM88BA6NKF7 163 aa13.85□□□□□ -0.19
LINC00539-201ENST00000411525 HCLS1P14317 486 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-201ENST00000411525 IFIT5Q13325 482 aaKnown RBP13.85□□□□□ -0.19
LINC00539-201ENST00000411525 EAPPQ56P03 285 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-201ENST00000411525 CCDC85AQ96PX6 553 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-201ENST00000411525 TMX4Q9H1E5 349 aaPredicted RBP13.85□□□□□ -0.19
LINC00539-201ENST00000411525 GREM2Q9H772 168 aa13.85□□□□□ -0.19
LINC00539-201ENST00000411525 MKRN1Q9UHC7 482 aaKnown RBP13.85□□□□□ -0.19
LINC00539-201ENST00000411525 CLEC11AQ9Y240 323 aa13.85□□□□□ -0.19
LINC00539-201ENST00000411525 ZNF541Q9H0D2 1346 aa13.85□□□□□ -0.19
LINC00539-201ENST00000411525 ANKRD18BA2A2Z9 1011 aa13.84□□□□□ -0.19
LINC00539-201ENST00000411525 CIAO1O76071 339 aa13.84□□□□□ -0.19
LINC00539-201ENST00000411525 SASH1O94885 1247 aa13.84□□□□□ -0.19
LINC00539-201ENST00000411525 ITGA6P23229 1130 aa13.84□□□□□ -0.19
LINC00539-201ENST00000411525 HOXA10P31260 410 aaPredicted RBP13.84□□□□□ -0.19
LINC00539-201ENST00000411525 EPHX2P34913 555 aa13.84□□□□□ -0.19
LINC00539-201ENST00000411525 EIF6P56537 245 aaKnown RBP13.84□□□□□ -0.19
LINC00539-201ENST00000411525 TAF7LQ5H9L4 462 aa13.84□□□□□ -0.19
LINC00539-201ENST00000411525 CLASRPQ8N2M8 674 aaKnown RBP13.84□□□□□ -0.19
LINC00539-201ENST00000411525 RBM17Q96I25 401 aaKnown RBP13.84□□□□□ -0.19
LINC00539-201ENST00000411525 FBXO3Q9UK99 471 aa13.84□□□□□ -0.19
LINC00539-201ENST00000411525 SPEF2Q9C093 1822 aa13.84□□□□□ -0.19
LINC00539-201ENST00000411525 AOX1Q06278 1338 aa13.84□□□□□ -0.19
LINC00539-201ENST00000411525 CNTNAP1P78357 1384 aa13.83□□□□□ -0.19
LINC00539-201ENST00000411525 ADAMTSL1Q8N6G6 1762 aa13.83□□□□□ -0.19
LINC00539-201ENST00000411525 EYA2O00167 538 aa13.83□□□□□ -0.2
LINC00539-201ENST00000411525 ITGBL1O95965 494 aaPredicted RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms