RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 FAM135BQ49AJ0 1406 aa16.45■□□□□ 0.22
RTF1-201ENST00000389629 JAK2O60674 1132 aa16.44■□□□□ 0.22
RTF1-201ENST00000389629 CNNM1Q9NRU3 951 aa16.44■□□□□ 0.22
RTF1-201ENST00000389629 PTPDC1A2A3K4 754 aa16.44■□□□□ 0.22
RTF1-201ENST00000389629 MCMDC2Q4G0Z9 681 aa16.44■□□□□ 0.22
RTF1-201ENST00000389629 SSH3Q8TE77 659 aa16.44■□□□□ 0.22
RTF1-201ENST00000389629 MAP3K5Q99683 1374 aa16.44■□□□□ 0.22
RTF1-201ENST00000389629 IDH1O75874 414 aaKnown RBP16.44■□□□□ 0.22
RTF1-201ENST00000389629 NAA30Q147X3 362 aaPredicted RBP16.44■□□□□ 0.22
RTF1-201ENST00000389629 ADCK5Q3MIX3 580 aa16.44■□□□□ 0.22
RTF1-201ENST00000389629 KIF1BO60333 1816 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 TTC21AQ8NDW8 1320 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 SRRTQ9BXP5 876 aaKnown RBP16.43■□□□□ 0.22
RTF1-201ENST00000389629 KLHDC4Q8TBB5 520 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 GOLGA6L9A6NEM1 432 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 SYKP43405 635 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 CCDC129Q6ZRS4 1044 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 BRMS1Q9HCU9 246 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 LZTFL1Q9NQ48 299 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 STAP2Q9UGK3 403 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 TPCN1Q9ULQ1 816 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 CTR9Q6PD62 1173 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 CCDC144CPQ8IYA2 1237 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 THEMISQ8N1K5 641 aaPredicted RBP16.43■□□□□ 0.22
RTF1-201ENST00000389629 GIMAP7Q8NHV1 300 aa16.43■□□□□ 0.22
RTF1-201ENST00000389629 NR1I2O75469 434 aa16.42■□□□□ 0.22
RTF1-201ENST00000389629 LSG1Q9H089 658 aaKnown RBP16.42■□□□□ 0.22
RTF1-201ENST00000389629 BICC1Q9H694 974 aaKnown RBP16.42■□□□□ 0.22
RTF1-201ENST00000389629 RHOXF2BP0C7M4 288 aa16.42■□□□□ 0.22
RTF1-201ENST00000389629 KCNH5Q8NCM2 988 aa16.42■□□□□ 0.22
RTF1-201ENST00000389629 RHOXF2Q9BQY4 288 aa16.42■□□□□ 0.22
RTF1-201ENST00000389629 IVLP07476 585 aa16.42■□□□□ 0.22
RTF1-201ENST00000389629 LINS1Q8NG48 757 aa16.42■□□□□ 0.22
RTF1-201ENST00000389629 NCOA3Q9Y6Q9 1424 aa16.42■□□□□ 0.22
RTF1-201ENST00000389629 KLF18A0A0U1RQI7 1052 aa16.42■□□□□ 0.22
RTF1-201ENST00000389629 PIP4K2AP48426 406 aaPredicted RBP16.42■□□□□ 0.22
RTF1-201ENST00000389629 GOLGA1Q92805 767 aa16.42■□□□□ 0.22
RTF1-201ENST00000389629 ZNF213O14771 459 aa16.41■□□□□ 0.22
RTF1-201ENST00000389629 MAP9Q49MG5 647 aa16.41■□□□□ 0.22
RTF1-201ENST00000389629 MICALL1Q8N3F8 863 aa16.41■□□□□ 0.22
RTF1-201ENST00000389629 NUP88Q99567 741 aaPredicted RBP16.41■□□□□ 0.22
RTF1-201ENST00000389629 CDC42BPBQ9Y5S2 1711 aa16.41■□□□□ 0.22
RTF1-201ENST00000389629 PHF8Q9UPP1 1060 aa16.41■□□□□ 0.22
RTF1-201ENST00000389629 GTF2E1P29083 439 aaPredicted RBP16.41■□□□□ 0.22
RTF1-201ENST00000389629 LARGE1O95461 756 aa16.41■□□□□ 0.22
RTF1-201ENST00000389629 SLC39A6Q13433 755 aa16.41■□□□□ 0.22
RTF1-201ENST00000389629 RNF187Q5TA31 235 aaPredicted RBP16.41■□□□□ 0.22
RTF1-201ENST00000389629 KCNG4Q8TDN1 519 aa16.41■□□□□ 0.22
RTF1-201ENST00000389629 XAGE3Q8WTP9 111 aa16.41■□□□□ 0.22
RTF1-201ENST00000389629 TM6SF1Q9BZW5 370 aa16.41■□□□□ 0.22
RTF1-201ENST00000389629 NDUFB9Q9Y6M9 179 aa16.41■□□□□ 0.22
RTF1-201ENST00000389629 GOLGA6L10A6NI86 522 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 TTC31Q49AM3 519 aaPredicted RBP16.4■□□□□ 0.22
RTF1-201ENST00000389629 ODF2Q5BJF6 829 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 COPS6Q7L5N1 327 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 CERS3Q8IU89 383 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 CACTINQ8WUQ7 758 aaKnown RBP16.4■□□□□ 0.22
RTF1-201ENST00000389629 CEBPAP49715 358 aaPredicted RBP16.4■□□□□ 0.22
RTF1-201ENST00000389629 EIF5P55010 431 aaKnown RBP16.4■□□□□ 0.22
RTF1-201ENST00000389629 CCDC102BQ68D86 513 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 SHROOM2Q13796 1616 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 OAS2P29728 719 aaKnown RBP16.4■□□□□ 0.22
RTF1-201ENST00000389629 EVA1CP58658 441 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 FAM160A1Q05DH4 1040 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 MRVI1Q9Y6F6 885 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 TET3O43151 1660 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 IQSEC2Q5JU85 1478 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 SPTLC2O15270 562 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 DNA2P51530 1060 aa16.4■□□□□ 0.22
RTF1-201ENST00000389629 POTEB2H3BUK9 544 aa16.39■□□□□ 0.21
RTF1-201ENST00000389629 PPP2R3AQ06190 1150 aa16.39■□□□□ 0.21
RTF1-201ENST00000389629 LRRC59Q96AG4 307 aaKnown RBP16.39■□□□□ 0.21
RTF1-201ENST00000389629 CEP89Q96ST8 783 aa16.39■□□□□ 0.21
RTF1-201ENST00000389629 NCOA5Q9HCD5 579 aaKnown RBP16.39■□□□□ 0.21
RTF1-201ENST00000389629 ZSWIM6Q9HCJ5 1215 aa16.39■□□□□ 0.21
RTF1-201ENST00000389629 MICU3Q86XE3 530 aa16.39■□□□□ 0.21
RTF1-201ENST00000389629 NCBP1Q09161 790 aaKnown RBP16.39■□□□□ 0.21
RTF1-201ENST00000389629 ANKRD13DQ6ZTN6 518 aa16.39■□□□□ 0.21
RTF1-201ENST00000389629 DHX32Q7L7V1 743 aaKnown RBP16.39■□□□□ 0.21
RTF1-201ENST00000389629 VPS37DQ86XT2 251 aa16.39■□□□□ 0.21
RTF1-201ENST00000389629 ZBTB22O15209 634 aa16.39■□□□□ 0.21
RTF1-201ENST00000389629 LRRC8AQ8IWT6 810 aa16.39■□□□□ 0.21
RTF1-201ENST00000389629 EDC3Q96F86 508 aaKnown RBP16.39■□□□□ 0.21
RTF1-201ENST00000389629 HOXC9P31274 260 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 FAM107BQ9H098 131 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 LGR6Q9HBX8 967 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 ABCA6Q8N139 1617 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 SPHKAPQ2M3C7 1700 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 A0A087WWV3 80 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 TFCP2Q12800 502 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 PLCD4Q9BRC7 762 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 ZFYVE16Q7Z3T8 1539 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 CTAGE15A4D2H0 777 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 CTAGE8P0CG41 777 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 MATR3P43243 847 aaKnown RBP eCLIP16.38■□□□□ 0.21
RTF1-201ENST00000389629 CTAGE6Q86UF2 777 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 CTAGE4Q8IX94 777 aa16.38■□□□□ 0.21
RTF1-201ENST00000389629 TXLNAP40222 546 aa16.37■□□□□ 0.21
RTF1-201ENST00000389629 ZSCAN26Q16670 478 aa16.37■□□□□ 0.21
RTF1-201ENST00000389629 ZSCAN20P17040 1043 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms