RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 SF3B3Q15393 1217 aaKnown RBP18.33■□□□□ 0.52
PTCH1-202ENST00000375271 ADM5C9JUS6 153 aa18.32■□□□□ 0.52
PTCH1-202ENST00000375271 UFL1O94874 794 aa18.32■□□□□ 0.52
PTCH1-202ENST00000375271 RPS8P62241 208 aaKnown RBP18.32■□□□□ 0.52
PTCH1-202ENST00000375271 GPSM2P81274 684 aa18.32■□□□□ 0.52
PTCH1-202ENST00000375271 KRT24Q2M2I5 525 aa18.32■□□□□ 0.52
PTCH1-202ENST00000375271 RIC3Q7Z5B4 369 aa18.32■□□□□ 0.52
PTCH1-202ENST00000375271 SAGE1Q9NXZ1 904 aa18.32■□□□□ 0.52
PTCH1-202ENST00000375271 GGA3Q9NZ52 723 aa18.32■□□□□ 0.52
PTCH1-202ENST00000375271 CHL1O00533 1208 aa18.31■□□□□ 0.52
PTCH1-202ENST00000375271 RUNDC1Q96C34 613 aa18.31■□□□□ 0.52
PTCH1-202ENST00000375271 ISCA1Q9BUE6 129 aa18.31■□□□□ 0.52
PTCH1-202ENST00000375271 POLLQ9UGP5 575 aa18.31■□□□□ 0.52
PTCH1-202ENST00000375271 GGA1Q9UJY5 639 aa18.31■□□□□ 0.52
PTCH1-202ENST00000375271 KIF23Q02241 960 aaPredicted RBP18.3■□□□□ 0.52
PTCH1-202ENST00000375271 TBC1D16Q8TBP0 767 aa18.3■□□□□ 0.52
PTCH1-202ENST00000375271 TRPA1O75762 1119 aa18.29■□□□□ 0.52
PTCH1-202ENST00000375271 CCDC152Q4G0S7 254 aa18.29■□□□□ 0.52
PTCH1-202ENST00000375271 ZIC5Q96T25 663 aa18.29■□□□□ 0.52
PTCH1-202ENST00000375271 AKAP11Q9UKA4 1901 aa18.29■□□□□ 0.52
PTCH1-202ENST00000375271 MYBBP1AQ9BQG0 1328 aaKnown RBP18.28■□□□□ 0.52
PTCH1-202ENST00000375271 DLK2Q6UY11 383 aa18.28■□□□□ 0.52
PTCH1-202ENST00000375271 REM2Q8IYK8 340 aaPredicted RBP18.28■□□□□ 0.52
PTCH1-202ENST00000375271 EGFRP00533 1210 aa18.27■□□□□ 0.52
PTCH1-202ENST00000375271 DUSP27Q5VZP5 1158 aa18.27■□□□□ 0.52
PTCH1-202ENST00000375271 ZBTB38Q8NAP3 1195 aaPredicted RBP18.27■□□□□ 0.52
PTCH1-202ENST00000375271 CDCA5Q96FF9 252 aa18.27■□□□□ 0.52
PTCH1-202ENST00000375271 RTL9Q8NET4 1388 aa18.27■□□□□ 0.51
PTCH1-202ENST00000375271 POLR2AP24928 1970 aaKnown RBP18.26■□□□□ 0.51
PTCH1-202ENST00000375271 FAM155AB1AL88 458 aaPredicted RBP18.26■□□□□ 0.51
PTCH1-202ENST00000375271 SLC10A3P09131 477 aa18.26■□□□□ 0.51
PTCH1-202ENST00000375271 VIL1P09327 827 aaKnown RBP18.26■□□□□ 0.51
PTCH1-202ENST00000375271 CALD1Q05682 793 aaKnown RBP18.26■□□□□ 0.51
PTCH1-202ENST00000375271 TRIM28Q13263 835 aaKnown RBP18.26■□□□□ 0.51
PTCH1-202ENST00000375271 AGBL3Q8NEM8 1001 aa18.26■□□□□ 0.51
PTCH1-202ENST00000375271 CHMP4AQ9BY43 222 aa18.26■□□□□ 0.51
PTCH1-202ENST00000375271 KCNQ5Q9NR82 932 aa18.26■□□□□ 0.51
PTCH1-202ENST00000375271 RNF186Q9NXI6 227 aa18.26■□□□□ 0.51
PTCH1-202ENST00000375271 DDX58O95786 925 aaKnown RBP18.25■□□□□ 0.51
PTCH1-202ENST00000375271 TTLL12Q14166 644 aaPredicted RBP18.25■□□□□ 0.51
PTCH1-202ENST00000375271 ANGEL2Q5VTE6 544 aaKnown RBP18.25■□□□□ 0.51
PTCH1-202ENST00000375271 RSBN1LQ6PCB5 846 aaPredicted RBP18.25■□□□□ 0.51
PTCH1-202ENST00000375271 ANKRD18AQ8IVF6 992 aa18.25■□□□□ 0.51
PTCH1-202ENST00000375271 MYD88Q99836 296 aa18.25■□□□□ 0.51
PTCH1-202ENST00000375271 PODXL2Q9NZ53 605 aa18.25■□□□□ 0.51
PTCH1-202ENST00000375271 NF2P35240 595 aa18.24■□□□□ 0.51
PTCH1-202ENST00000375271 SOX10P56693 466 aa18.24■□□□□ 0.51
PTCH1-202ENST00000375271 FKBP1BP68106 108 aa18.24■□□□□ 0.51
PTCH1-202ENST00000375271 SCARF1Q14162 830 aa18.24■□□□□ 0.51
PTCH1-202ENST00000375271 FBXW7Q969H0 707 aa18.24■□□□□ 0.51
PTCH1-202ENST00000375271 CCDC85AQ96PX6 553 aaPredicted RBP18.24■□□□□ 0.51
PTCH1-202ENST00000375271 SEC31BQ9NQW1 1179 aa18.24■□□□□ 0.51
PTCH1-202ENST00000375271 CWC25Q9NXE8 425 aaPredicted RBP18.24■□□□□ 0.51
PTCH1-202ENST00000375271 HDAC9Q9UKV0 1011 aa18.24■□□□□ 0.51
PTCH1-202ENST00000375271 TRIM35Q9UPQ4 493 aa18.24■□□□□ 0.51
PTCH1-202ENST00000375271 XDHP47989 1333 aa18.23■□□□□ 0.51
PTCH1-202ENST00000375271 PDE8AO60658 829 aa18.23■□□□□ 0.51
PTCH1-202ENST00000375271 USP17L8P0C7I0 530 aa18.23■□□□□ 0.51
PTCH1-202ENST00000375271 CTU1Q7Z7A3 348 aaKnown RBP18.23■□□□□ 0.51
PTCH1-202ENST00000375271 CCDC191Q8NCU4 936 aa18.23■□□□□ 0.51
PTCH1-202ENST00000375271 CDC5LQ99459 802 aaKnown RBP18.23■□□□□ 0.51
PTCH1-202ENST00000375271 ATP2B4P23634 1241 aa18.22■□□□□ 0.51
PTCH1-202ENST00000375271 OGFOD1Q8N543 542 aa18.22■□□□□ 0.51
PTCH1-202ENST00000375271 MYOZ2Q9NPC6 264 aa18.22■□□□□ 0.51
PTCH1-202ENST00000375271 MBIPQ9NS73 344 aa18.22■□□□□ 0.51
PTCH1-202ENST00000375271 USP17L3A6NCW0 530 aa18.21■□□□□ 0.51
PTCH1-202ENST00000375271 USP17L4A6NCW7 530 aa18.21■□□□□ 0.51
PTCH1-202ENST00000375271 PCCAP05165 728 aaPredicted RBP18.21■□□□□ 0.51
PTCH1-202ENST00000375271 USP17L1Q7RTZ2 530 aa18.21■□□□□ 0.51
PTCH1-202ENST00000375271 CSRNP1Q96S65 589 aa18.21■□□□□ 0.51
PTCH1-202ENST00000375271 PAPPA2Q9BXP8 1791 aa18.21■□□□□ 0.51
PTCH1-202ENST00000375271 ASTN2O75129 1339 aaPredicted RBP18.21■□□□□ 0.51
PTCH1-202ENST00000375271 PITPNM2Q9BZ72 1349 aa18.21■□□□□ 0.51
PTCH1-202ENST00000375271 ELL2O00472 640 aaPredicted RBP18.2■□□□□ 0.5
PTCH1-202ENST00000375271 ZNF280AP59817 542 aaPredicted RBP18.2■□□□□ 0.5
PTCH1-202ENST00000375271 GNAI1P63096 354 aa18.2■□□□□ 0.5
PTCH1-202ENST00000375271 PODNQ7Z5L7 613 aa18.2■□□□□ 0.5
PTCH1-202ENST00000375271 RASAL3Q86YV0 1011 aa18.2■□□□□ 0.5
PTCH1-202ENST00000375271 SCN9AQ15858 1988 aa18.2■□□□□ 0.5
PTCH1-202ENST00000375271 ZNF609O15014 1411 aa18.19■□□□□ 0.5
PTCH1-202ENST00000375271 NEXNQ0ZGT2 675 aa18.19■□□□□ 0.5
PTCH1-202ENST00000375271 PHAXQ9H814 394 aaKnown RBP18.19■□□□□ 0.5
PTCH1-202ENST00000375271 PKN2Q16513 984 aaKnown RBP18.18■□□□□ 0.5
PTCH1-202ENST00000375271 CCDC30Q5VVM6 783 aa18.18■□□□□ 0.5
PTCH1-202ENST00000375271 IFT57Q9NWB7 429 aa18.18■□□□□ 0.5
PTCH1-202ENST00000375271 PCDH10Q9P2E7 1040 aa18.18■□□□□ 0.5
PTCH1-202ENST00000375271 ADAMTS8Q9UP79 889 aa18.18■□□□□ 0.5
PTCH1-202ENST00000375271 DDX10Q13206 875 aaKnown RBP18.17■□□□□ 0.5
PTCH1-202ENST00000375271 JARID2Q92833 1246 aaPredicted RBP18.17■□□□□ 0.5
PTCH1-202ENST00000375271 COL4A1P02462 1669 aa18.17■□□□□ 0.5
PTCH1-202ENST00000375271 MYO3BQ8WXR4 1341 aa18.17■□□□□ 0.5
PTCH1-202ENST00000375271 PSME4Q14997 1843 aa18.16■□□□□ 0.5
PTCH1-202ENST00000375271 CTSWP56202 376 aa18.16■□□□□ 0.5
PTCH1-202ENST00000375271 METTL22Q9BUU2 404 aaPredicted RBP18.16■□□□□ 0.5
PTCH1-202ENST00000375271 STK31Q9BXU1 1019 aa18.16■□□□□ 0.5
PTCH1-202ENST00000375271 MED23Q9ULK4 1368 aa18.16■□□□□ 0.5
PTCH1-202ENST00000375271 UBE2Q2LH0YL09 131 aa18.15■□□□□ 0.5
PTCH1-202ENST00000375271 IGHMBP2P38935 993 aaKnown RBP18.15■□□□□ 0.5
PTCH1-202ENST00000375271 SREBF2Q12772 1141 aa18.15■□□□□ 0.5
PTCH1-202ENST00000375271 ARMC9Q7Z3E5 817 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms