RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SEC63Q9UGP8 760 aaKnown RBP22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 SPTLC2O15270 562 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 RHOXF2BP0C7M4 288 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 EVCP57679 992 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 RHOXF2Q9BQY4 288 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 TAOK3Q9H2K8 898 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 MACROD2A1Z1Q3 448 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 CCDC40Q4G0X9 1142 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 NBPF11Q86T75 865 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 SPAG1Q07617 926 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 CCDC96Q2M329 555 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 CEP85Q6P2H3 762 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 CNKSR2Q8WXI2 1034 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 ALG1Q9BT22 464 aa22.34■■□□□ 1.17
CCDC88B-202ENST00000356786 OPA1O60313 960 aa22.33■■□□□ 1.17
CCDC88B-202ENST00000356786 GABPB1Q06547 395 aaPredicted RBP22.33■■□□□ 1.17
CCDC88B-202ENST00000356786 OTUD6BQ8N6M0 293 aa22.33■■□□□ 1.17
CCDC88B-202ENST00000356786 TESK2Q96S53 571 aa22.33■■□□□ 1.17
CCDC88B-202ENST00000356786 UTP14AQ9BVJ6 771 aaKnown RBP22.33■■□□□ 1.17
CCDC88B-202ENST00000356786 TCP11L1Q9NUJ3 509 aa22.33■■□□□ 1.17
CCDC88B-202ENST00000356786 ZC3H6P61129 1189 aaKnown RBP22.33■■□□□ 1.17
CCDC88B-202ENST00000356786 RRAGBQ5VZM2 374 aa22.33■■□□□ 1.17
CCDC88B-202ENST00000356786 CTNNBL1Q8WYA6 563 aaPredicted RBP22.33■■□□□ 1.17
CCDC88B-202ENST00000356786 MKNK2Q9HBH9 465 aa22.33■■□□□ 1.17
CCDC88B-202ENST00000356786 CHMLP26374 656 aa22.33■■□□□ 1.16
CCDC88B-202ENST00000356786 CATIPQ7Z7H3 387 aa22.33■■□□□ 1.16
CCDC88B-202ENST00000356786 CEP57Q86XR8 500 aa22.33■■□□□ 1.16
CCDC88B-202ENST00000356786 FAM114A1Q8IWE2 563 aa22.33■■□□□ 1.16
CCDC88B-202ENST00000356786 VAMP4O75379 141 aa22.32■■□□□ 1.16
CCDC88B-202ENST00000356786 UBE3BQ7Z3V4 1068 aa22.32■■□□□ 1.16
CCDC88B-202ENST00000356786 TSC1Q92574 1164 aa22.32■■□□□ 1.16
CCDC88B-202ENST00000356786 TSPYL6Q8N831 410 aa22.32■■□□□ 1.16
CCDC88B-202ENST00000356786 KRBA2Q6ZNG9 492 aa22.32■■□□□ 1.16
CCDC88B-202ENST00000356786 PYM1Q9BRP8 204 aaKnown RBP22.32■■□□□ 1.16
CCDC88B-202ENST00000356786 ASXL1Q8IXJ9 1541 aa22.31■■□□□ 1.16
CCDC88B-202ENST00000356786 TUBB4BP68371 445 aa22.31■■□□□ 1.16
CCDC88B-202ENST00000356786 TMEM266Q2M3C6 531 aa22.31■■□□□ 1.16
CCDC88B-202ENST00000356786 ZNF569Q5MCW4 686 aa22.31■■□□□ 1.16
CCDC88B-202ENST00000356786 TCERG1LQ5VWI1 586 aa22.31■■□□□ 1.16
CCDC88B-202ENST00000356786 LMBRD1Q9NUN5 540 aa22.31■■□□□ 1.16
CCDC88B-202ENST00000356786 PPP2R3AQ06190 1150 aa22.3■■□□□ 1.16
CCDC88B-202ENST00000356786 AMOTQ4VCS5 1084 aa22.3■■□□□ 1.16
CCDC88B-202ENST00000356786 POLR3AO14802 1390 aaPredicted RBP22.3■■□□□ 1.16
CCDC88B-202ENST00000356786 AMPD3Q01432 767 aa22.3■■□□□ 1.16
CCDC88B-202ENST00000356786 DNAJC21Q5F1R6 531 aaKnown RBP22.3■■□□□ 1.16
CCDC88B-202ENST00000356786 ANKRD36BQ8N2N9 1353 aa22.3■■□□□ 1.16
CCDC88B-202ENST00000356786 ZEB2O60315 1214 aa22.3■■□□□ 1.16
CCDC88B-202ENST00000356786 ELF2Q15723 593 aa22.3■■□□□ 1.16
CCDC88B-202ENST00000356786 TUBBP07437 444 aa22.29■■□□□ 1.16
CCDC88B-202ENST00000356786 ARHGEF12Q9NZN5 1544 aa22.29■■□□□ 1.16
CCDC88B-202ENST00000356786 PER1O15534 1290 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 CPA1P15085 419 aa22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 POTEJP0CG39 1038 aa22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 KCNH5Q8NCM2 988 aa22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 GUCA1BQ9UMX6 200 aa22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 ATP5J2-PTCD1G3V325 749 aa22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 ZBTB43O43298 467 aa22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 TACC1O75410 805 aa22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 HDXQ7Z353 690 aa22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 NMIQ13287 307 aaPredicted RBP22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 CAPZA3Q96KX2 299 aa22.28■■□□□ 1.16
CCDC88B-202ENST00000356786 SPTY2D1Q68D10 685 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 CALML4Q96GE6 196 aa22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 RMND1Q9NWS8 449 aa22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 TMEM63CQ9P1W3 806 aa22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 KRT86O43790 486 aa22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 BCL2L12Q9HB09 334 aa22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 ZNF287Q9HBT7 754 aa22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 CREB3L3Q68CJ9 461 aa22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 JARID2Q92833 1246 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 MCMDC2Q4G0Z9 681 aa22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 PRDM11Q9NQV5 511 aa22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 TEX14Q8IWB6 1497 aa22.27■■□□□ 1.16
CCDC88B-202ENST00000356786 KIF5AQ12840 1032 aa22.26■■□□□ 1.15
CCDC88B-202ENST00000356786 PAF1Q8N7H5 531 aa22.26■■□□□ 1.15
CCDC88B-202ENST00000356786 MFSD6Q6ZSS7 791 aa22.26■■□□□ 1.15
CCDC88B-202ENST00000356786 TNRQ92752 1358 aa22.26■■□□□ 1.15
CCDC88B-202ENST00000356786 ZBTB7BO15156 539 aaPredicted RBP22.26■■□□□ 1.15
CCDC88B-202ENST00000356786 STARD3NLO95772 234 aa22.26■■□□□ 1.15
CCDC88B-202ENST00000356786 CCDC121Q6ZUS5 278 aa22.26■■□□□ 1.15
CCDC88B-202ENST00000356786 HOOK3Q86VS8 718 aa22.26■■□□□ 1.15
CCDC88B-202ENST00000356786 KIAA0753Q2KHM9 967 aa22.26■■□□□ 1.15
CCDC88B-202ENST00000356786 FBF1Q8TES7 1133 aa22.26■■□□□ 1.15
CCDC88B-202ENST00000356786 FAM173BQ6P4H8 233 aa22.25■■□□□ 1.15
CCDC88B-202ENST00000356786 OTUD7AQ8TE49 926 aaPredicted RBP22.25■■□□□ 1.15
CCDC88B-202ENST00000356786 STX17P56962 302 aa22.25■■□□□ 1.15
CCDC88B-202ENST00000356786 ZSCAN29Q8IWY8 852 aaPredicted RBP22.25■■□□□ 1.15
CCDC88B-202ENST00000356786 TTC21BQ7Z4L5 1316 aa22.25■■□□□ 1.15
CCDC88B-202ENST00000356786 A0A1B0GUL7 405 aa22.25■■□□□ 1.15
CCDC88B-202ENST00000356786 KRT83P78385 493 aa22.25■■□□□ 1.15
CCDC88B-202ENST00000356786 BAG1Q99933 345 aaPredicted RBP22.25■■□□□ 1.15
CCDC88B-202ENST00000356786 RUFY3Q7L099 469 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 CAVIN4Q5BKX8 364 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 MSL1Q68DK7 614 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 CARD6Q9BX69 1037 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 FSD2A1L4K1 749 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 PTPDC1A2A3K4 754 aa22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 GADD45BO75293 160 aaPredicted RBP22.24■■□□□ 1.15
CCDC88B-202ENST00000356786 CCDC155Q8N6L0 562 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms