RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 PAK2Q13177 524 aa14.26□□□□□ -0.13
COL6A3-203ENST00000353578 NAPGQ99747 312 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-203ENST00000353578 MCTP2Q6DN12 878 aa14.26□□□□□ -0.13
COL6A3-203ENST00000353578 AFAP1L2Q8N4X5 818 aa14.26□□□□□ -0.13
COL6A3-203ENST00000353578 MROH2BQ7Z745 1585 aa14.26□□□□□ -0.13
COL6A3-203ENST00000353578 CKAP2LQ8IYA6 745 aa14.26□□□□□ -0.13
COL6A3-203ENST00000353578 RABEP2Q9H5N1 569 aa14.26□□□□□ -0.13
COL6A3-203ENST00000353578 ARHGAP6O43182 974 aa14.26□□□□□ -0.13
COL6A3-203ENST00000353578 WDR78Q5VTH9 848 aa14.26□□□□□ -0.13
COL6A3-203ENST00000353578 SPAG5Q96R06 1193 aa14.26□□□□□ -0.13
COL6A3-203ENST00000353578 N4BP3O15049 544 aa14.25□□□□□ -0.13
COL6A3-203ENST00000353578 SMC1BQ8NDV3 1235 aa14.25□□□□□ -0.13
COL6A3-203ENST00000353578 PPP1R12CQ9BZL4 782 aa14.25□□□□□ -0.13
COL6A3-203ENST00000353578 ZNF330Q9Y3S2 320 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-203ENST00000353578 INSRP06213 1382 aa14.25□□□□□ -0.13
COL6A3-203ENST00000353578 MPNDQ8N594 471 aa14.25□□□□□ -0.13
COL6A3-203ENST00000353578 ACTR5Q9H9F9 607 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-203ENST00000353578 OAS2P29728 719 aaKnown RBP14.25□□□□□ -0.13
COL6A3-203ENST00000353578 NGDNQ8NEJ9 315 aaKnown RBP14.25□□□□□ -0.13
COL6A3-203ENST00000353578 NCOA1Q15788 1441 aa14.25□□□□□ -0.13
COL6A3-203ENST00000353578 SMIM24O75264 130 aa14.25□□□□□ -0.13
COL6A3-203ENST00000353578 MRPS27Q92552 414 aaKnown RBP14.25□□□□□ -0.13
COL6A3-203ENST00000353578 PTPRCP08575 1304 aa14.25□□□□□ -0.13
COL6A3-203ENST00000353578 SAFB2Q14151 953 aaKnown RBP eCLIP14.25□□□□□ -0.13
COL6A3-203ENST00000353578 STK26Q9P289 416 aa14.25□□□□□ -0.13
COL6A3-203ENST00000353578 NUTM2DQ5VT03 806 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-203ENST00000353578 NUTM2AQ8IVF1 878 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-203ENST00000353578 TRIM6Q9C030 488 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-203ENST00000353578 ITSN2Q9NZM3 1697 aa14.24□□□□□ -0.13
COL6A3-203ENST00000353578 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.24□□□□□ -0.13
COL6A3-203ENST00000353578 ZFP91Q96JP5 570 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-203ENST00000353578 YY1AP1Q9H869 796 aa14.24□□□□□ -0.13
COL6A3-203ENST00000353578 ANKRD50Q9ULJ7 1429 aa14.24□□□□□ -0.13
COL6A3-203ENST00000353578 MTIF2P46199 727 aaKnown RBP14.24□□□□□ -0.13
COL6A3-203ENST00000353578 CALCOCO2Q13137 446 aa14.24□□□□□ -0.13
COL6A3-203ENST00000353578 USP6NLQ92738 828 aa14.24□□□□□ -0.13
COL6A3-203ENST00000353578 RRP36Q96EU6 259 aaKnown RBP14.24□□□□□ -0.13
COL6A3-203ENST00000353578 MAGEA9P43362 315 aa14.24□□□□□ -0.13
COL6A3-203ENST00000353578 VGLL3A8MV65 326 aa14.24□□□□□ -0.13
COL6A3-203ENST00000353578 WHAMMQ8TF30 809 aa14.24□□□□□ -0.13
COL6A3-203ENST00000353578 EID1Q9Y6B2 187 aa14.24□□□□□ -0.13
COL6A3-203ENST00000353578 IL16Q14005 1332 aa14.24□□□□□ -0.13
COL6A3-203ENST00000353578 NEUROD6Q96NK8 337 aa14.24□□□□□ -0.13
COL6A3-203ENST00000353578 RNF41Q9H4P4 317 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-203ENST00000353578 FAF1Q9UNN5 650 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-203ENST00000353578 RRP15Q9Y3B9 282 aaKnown RBP14.24□□□□□ -0.13
COL6A3-203ENST00000353578 ZFXP17010 805 aaPredicted RBP14.23□□□□□ -0.13
COL6A3-203ENST00000353578 SYKP43405 635 aa14.23□□□□□ -0.13
COL6A3-203ENST00000353578 BICDL1Q6ZP65 573 aa14.23□□□□□ -0.13
COL6A3-203ENST00000353578 PARP2Q9UGN5 583 aa14.23□□□□□ -0.13
COL6A3-203ENST00000353578 TPD52P55327 224 aaPredicted RBP14.23□□□□□ -0.13
COL6A3-203ENST00000353578 WDHD1O75717 1129 aaPredicted RBP14.23□□□□□ -0.13
COL6A3-203ENST00000353578 HAUS8Q9BT25 410 aa14.23□□□□□ -0.13
COL6A3-203ENST00000353578 PANK2Q9BZ23 570 aa14.23□□□□□ -0.13
COL6A3-203ENST00000353578 PPP1R9BQ96SB3 815 aa14.23□□□□□ -0.13
COL6A3-203ENST00000353578 POLE3Q9NRF9 147 aa14.23□□□□□ -0.13
COL6A3-203ENST00000353578 NCOA2Q15596 1464 aa14.23□□□□□ -0.13
COL6A3-203ENST00000353578 TNIP1Q15025 636 aa14.23□□□□□ -0.13
COL6A3-203ENST00000353578 NBPF10Q6P3W6 841 aaKnown RBP14.23□□□□□ -0.13
COL6A3-203ENST00000353578 ZC3H15Q8WU90 426 aaKnown RBP14.23□□□□□ -0.13
COL6A3-203ENST00000353578 RIOK3O14730 519 aaKnown RBP14.23□□□□□ -0.13
COL6A3-203ENST00000353578 PRIM1P49642 420 aaKnown RBP14.23□□□□□ -0.13
COL6A3-203ENST00000353578 STAG1Q8WVM7 1258 aa14.23□□□□□ -0.13
COL6A3-203ENST00000353578 VWA3BQ502W6 1294 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 PRR16Q569H4 304 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 TTC19Q6DKK2 380 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-203ENST00000353578 ARHGAP18Q8N392 663 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 SEC63Q9UGP8 760 aaKnown RBP14.22□□□□□ -0.13
COL6A3-203ENST00000353578 UTP11Q9Y3A2 253 aaKnown RBP14.22□□□□□ -0.13
COL6A3-203ENST00000353578 DAAM1Q9Y4D1 1078 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 SOX12O15370 315 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 BRAPQ7Z569 592 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 TCP11L1Q9NUJ3 509 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 GOLGA8QA0A0J9YX86 632 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 GOLGA8OA6NCC3 632 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 GOLGA8NF8WBI6 632 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 ELL2O00472 640 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-203ENST00000353578 COG7P83436 770 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 AEBP2Q6ZN18 517 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-203ENST00000353578 SCOCQ9UIL1 159 aa14.22□□□□□ -0.13
COL6A3-203ENST00000353578 BAG1Q99933 345 aaPredicted RBP14.21□□□□□ -0.13
COL6A3-203ENST00000353578 CAPN7Q9Y6W3 813 aa14.21□□□□□ -0.13
COL6A3-203ENST00000353578 RIC3Q7Z5B4 369 aa14.21□□□□□ -0.13
COL6A3-203ENST00000353578 MIS12Q9H081 205 aa14.21□□□□□ -0.13
COL6A3-203ENST00000353578 RTL1A6NKG5 1358 aa14.21□□□□□ -0.13
COL6A3-203ENST00000353578 PSMA7O14818 248 aa14.21□□□□□ -0.13
COL6A3-203ENST00000353578 NEK1Q96PY6 1258 aa14.21□□□□□ -0.13
COL6A3-203ENST00000353578 RABGGTAQ92696 567 aa14.21□□□□□ -0.13
COL6A3-203ENST00000353578 RBM27Q9P2N5 1060 aaKnown RBP14.21□□□□□ -0.13
COL6A3-203ENST00000353578 I3L4J1 428 aa14.21□□□□□ -0.13
COL6A3-203ENST00000353578 SLFNL1Q499Z3 407 aa14.21□□□□□ -0.13
COL6A3-203ENST00000353578 FBXO41Q8TF61 875 aa14.21□□□□□ -0.13
COL6A3-203ENST00000353578 CCDC51Q96ER9 411 aa14.21□□□□□ -0.13
COL6A3-203ENST00000353578 C8orf74Q6P047 294 aa14.21□□□□□ -0.14
COL6A3-203ENST00000353578 TBC1D9Q6ZT07 1266 aa14.21□□□□□ -0.14
COL6A3-203ENST00000353578 CCDC42Q96M95 316 aa14.21□□□□□ -0.14
COL6A3-203ENST00000353578 PODNQ7Z5L7 613 aa14.21□□□□□ -0.14
COL6A3-203ENST00000353578 CALML4Q96GE6 196 aa14.21□□□□□ -0.14
COL6A3-203ENST00000353578 PAIP2BQ9ULR5 123 aaKnown RBP14.21□□□□□ -0.14
COL6A3-203ENST00000353578 RNF40O75150 1001 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms