RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ANKIB1Q9P2G1 1089 aa19.99■□□□□ 0.79
CLN3-201ENST00000333496 ZNRF3Q9ULT6 936 aa19.99■□□□□ 0.79
CLN3-201ENST00000333496 WTIPA6NIX2 430 aaPredicted RBP19.98■□□□□ 0.79
CLN3-201ENST00000333496 BCAR3O75815 825 aa19.98■□□□□ 0.79
CLN3-201ENST00000333496 C16orf71Q8IYS4 520 aaPredicted RBP19.98■□□□□ 0.79
CLN3-201ENST00000333496 RBM46Q8TBY0 533 aaKnown RBP19.98■□□□□ 0.79
CLN3-201ENST00000333496 XDHP47989 1333 aa19.98■□□□□ 0.79
CLN3-201ENST00000333496 YDJCA8MPS7 323 aa19.98■□□□□ 0.79
CLN3-201ENST00000333496 RIMBP2O15034 1052 aa19.98■□□□□ 0.79
CLN3-201ENST00000333496 IGHMBP2P38935 993 aaKnown RBP19.98■□□□□ 0.79
CLN3-201ENST00000333496 CXCL9Q07325 125 aa19.98■□□□□ 0.79
CLN3-201ENST00000333496 KIF16BQ96L93 1317 aa19.97■□□□□ 0.79
CLN3-201ENST00000333496 ANKRD18BA2A2Z9 1011 aa19.97■□□□□ 0.79
CLN3-201ENST00000333496 UFL1O94874 794 aa19.97■□□□□ 0.79
CLN3-201ENST00000333496 API5Q9BZZ5 524 aaKnown RBP19.97■□□□□ 0.79
CLN3-201ENST00000333496 GGA1Q9UJY5 639 aa19.97■□□□□ 0.79
CLN3-201ENST00000333496 CHMP3Q9Y3E7 222 aa19.97■□□□□ 0.79
CLN3-201ENST00000333496 GJA3Q9Y6H8 435 aa19.97■□□□□ 0.79
CLN3-201ENST00000333496 PSME4Q14997 1843 aa19.96■□□□□ 0.79
CLN3-201ENST00000333496 IFIT5Q13325 482 aaKnown RBP19.96■□□□□ 0.79
CLN3-201ENST00000333496 ARHGAP45Q92619 1136 aa19.96■□□□□ 0.79
CLN3-201ENST00000333496 EYA3Q99504 573 aa19.96■□□□□ 0.79
CLN3-201ENST00000333496 DBNDD1Q9H9R9 158 aa19.96■□□□□ 0.79
CLN3-201ENST00000333496 CEP350Q5VT06 3117 aa19.96■□□□□ 0.79
CLN3-201ENST00000333496 MPHOSPH8Q99549 860 aa19.95■□□□□ 0.78
CLN3-201ENST00000333496 BICC1Q9H694 974 aaKnown RBP19.95■□□□□ 0.78
CLN3-201ENST00000333496 IQCA1LA6NCM1 817 aa19.94■□□□□ 0.78
CLN3-201ENST00000333496 POTEIP0CG38 1075 aa19.94■□□□□ 0.78
CLN3-201ENST00000333496 POTEJP0CG39 1038 aa19.94■□□□□ 0.78
CLN3-201ENST00000333496 CCT4P50991 539 aaKnown RBP19.94■□□□□ 0.78
CLN3-201ENST00000333496 SCNN1DP51172 638 aa19.94■□□□□ 0.78
CLN3-201ENST00000333496 RABL6Q3YEC7 729 aaPredicted RBP19.94■□□□□ 0.78
CLN3-201ENST00000333496 ZNF594Q96JF6 807 aaPredicted RBP19.94■□□□□ 0.78
CLN3-201ENST00000333496 TAF1DQ9H5J8 278 aaPredicted RBP19.94■□□□□ 0.78
CLN3-201ENST00000333496 ADAMTSL1Q8N6G6 1762 aa19.94■□□□□ 0.78
CLN3-201ENST00000333496 ATP2B4P23634 1241 aa19.94■□□□□ 0.78
CLN3-201ENST00000333496 DOK7Q18PE1 504 aa19.94■□□□□ 0.78
CLN3-201ENST00000333496 ANKRD44Q8N8A2 993 aa19.94■□□□□ 0.78
CLN3-201ENST00000333496 ZC3H12CQ9C0D7 883 aaKnown RBP19.94■□□□□ 0.78
CLN3-201ENST00000333496 HACL1Q9UJ83 578 aa19.94■□□□□ 0.78
CLN3-201ENST00000333496 TNNQ9UQP3 1299 aa19.94■□□□□ 0.78
CLN3-201ENST00000333496 RAD17O75943 681 aa19.93■□□□□ 0.78
CLN3-201ENST00000333496 CCDC57Q2TAC2 916 aa19.93■□□□□ 0.78
CLN3-201ENST00000333496 KCNQ5Q9NR82 932 aa19.93■□□□□ 0.78
CLN3-201ENST00000333496 ECE2O60344 883 aa19.92■□□□□ 0.78
CLN3-201ENST00000333496 TRIM27P14373 513 aa19.92■□□□□ 0.78
CLN3-201ENST00000333496 CHRNDQ07001 517 aa19.92■□□□□ 0.78
CLN3-201ENST00000333496 FSTL1Q12841 308 aa19.92■□□□□ 0.78
CLN3-201ENST00000333496 CIAPIN1Q6FI81 312 aa19.92■□□□□ 0.78
CLN3-201ENST00000333496 ZNF646O15015 1829 aaPredicted RBP19.92■□□□□ 0.78
CLN3-201ENST00000333496 HSPA6P17066 643 aa19.91■□□□□ 0.78
CLN3-201ENST00000333496 EPHX2P34913 555 aa19.91■□□□□ 0.78
CLN3-201ENST00000333496 SMC1BQ8NDV3 1235 aa19.91■□□□□ 0.78
CLN3-201ENST00000333496 EPS15P42566 896 aa19.91■□□□□ 0.78
CLN3-201ENST00000333496 INTS3Q68E01 1043 aaKnown RBP19.91■□□□□ 0.78
CLN3-201ENST00000333496 ATF7IPQ6VMQ6 1270 aa19.91■□□□□ 0.78
CLN3-201ENST00000333496 FRAT1Q92837 279 aaPredicted RBP19.91■□□□□ 0.78
CLN3-201ENST00000333496 MED23Q9ULK4 1368 aa19.9■□□□□ 0.78
CLN3-201ENST00000333496 IPO8O15397 1037 aaKnown RBP19.9■□□□□ 0.78
CLN3-201ENST00000333496 LDHAL6AQ6ZMR3 332 aa19.9■□□□□ 0.78
CLN3-201ENST00000333496 TXNRD3Q86VQ6 643 aa19.9■□□□□ 0.78
CLN3-201ENST00000333496 ANKRD2Q9GZV1 360 aa19.9■□□□□ 0.78
CLN3-201ENST00000333496 LEMD3Q9Y2U8 911 aa19.9■□□□□ 0.78
CLN3-201ENST00000333496 SNAP23O00161 211 aa19.89■□□□□ 0.77
CLN3-201ENST00000333496 PSMD14O00487 310 aa19.89■□□□□ 0.77
CLN3-201ENST00000333496 TNIP1Q15025 636 aa19.89■□□□□ 0.77
CLN3-201ENST00000333496 HELBQ8NG08 1087 aaPredicted RBP19.89■□□□□ 0.77
CLN3-201ENST00000333496 GPRC5DQ9NZD1 345 aa19.89■□□□□ 0.77
CLN3-201ENST00000333496 ZNF804BA4D1E1 1349 aa19.89■□□□□ 0.77
CLN3-201ENST00000333496 TAF5LO75529 589 aa19.88■□□□□ 0.77
CLN3-201ENST00000333496 GMPSP49915 693 aaPredicted RBP19.88■□□□□ 0.77
CLN3-201ENST00000333496 TAF7LQ5H9L4 462 aa19.88■□□□□ 0.77
CLN3-201ENST00000333496 MEIS3Q99687 375 aa19.88■□□□□ 0.77
CLN3-201ENST00000333496 PUS3Q9BZE2 481 aaKnown RBP19.88■□□□□ 0.77
CLN3-201ENST00000333496 KLRK1P26718 216 aa19.87■□□□□ 0.77
CLN3-201ENST00000333496 LMOD1P29536 600 aaPredicted RBP19.87■□□□□ 0.77
CLN3-201ENST00000333496 CLUAP1Q96AJ1 413 aa19.87■□□□□ 0.77
CLN3-201ENST00000333496 ZBTB12Q9Y330 459 aaPredicted RBP19.87■□□□□ 0.77
CLN3-201ENST00000333496 UBTFL1P0CB47 393 aaPredicted RBP19.87■□□□□ 0.77
CLN3-201ENST00000333496 EAPPQ56P03 285 aaPredicted RBP19.87■□□□□ 0.77
CLN3-201ENST00000333496 LDHDQ86WU2 507 aa19.87■□□□□ 0.77
CLN3-201ENST00000333496 CNNM1Q9NRU3 951 aa19.87■□□□□ 0.77
CLN3-201ENST00000333496 IRS2Q9Y4H2 1338 aa19.86■□□□□ 0.77
CLN3-201ENST00000333496 G3V3G9 751 aa19.86■□□□□ 0.77
CLN3-201ENST00000333496 DCAF8Q5TAQ9 597 aa19.86■□□□□ 0.77
CLN3-201ENST00000333496 ZKSCAN2Q63HK3 967 aa19.86■□□□□ 0.77
CLN3-201ENST00000333496 CHADLQ6NUI6 762 aa19.86■□□□□ 0.77
CLN3-201ENST00000333496 PNMA8AQ86V59 439 aaPredicted RBP19.86■□□□□ 0.77
CLN3-201ENST00000333496 RIPOR2Q9Y4F9 1068 aa19.86■□□□□ 0.77
CLN3-201ENST00000333496 SHTN1A0MZ66 631 aa19.85■□□□□ 0.77
CLN3-201ENST00000333496 PODNQ7Z5L7 613 aa19.85■□□□□ 0.77
CLN3-201ENST00000333496 KLHDC4Q8TBB5 520 aa19.85■□□□□ 0.77
CLN3-201ENST00000333496 VIL1P09327 827 aaKnown RBP19.84■□□□□ 0.77
CLN3-201ENST00000333496 RFX5P48382 616 aaPredicted RBP19.84■□□□□ 0.77
CLN3-201ENST00000333496 LRRC24Q50LG9 513 aa19.84■□□□□ 0.77
CLN3-201ENST00000333496 LRRFIP2Q9Y608 721 aaKnown RBP19.84■□□□□ 0.77
CLN3-201ENST00000333496 POLR2AP24928 1970 aaKnown RBP19.84■□□□□ 0.77
CLN3-201ENST00000333496 PLIN1O60240 522 aa19.84■□□□□ 0.77
CLN3-201ENST00000333496 ADARB2Q9NS39 739 aaKnown RBP19.84■□□□□ 0.77
CLN3-201ENST00000333496 CNOT7Q9UIV1 285 aaKnown RBP19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms