RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 C9orf78Q9NZ63 289 aaPredicted RBP20.38■□□□□ 0.85
HDDC2-201ENST00000318787 POLLQ9UGP5 575 aa20.38■□□□□ 0.85
HDDC2-201ENST00000318787 DOK7Q18PE1 504 aa20.37■□□□□ 0.85
HDDC2-201ENST00000318787 FAM161AQ3B820 660 aa20.37■□□□□ 0.85
HDDC2-201ENST00000318787 SSH1Q8WYL5 1049 aa20.37■□□□□ 0.85
HDDC2-201ENST00000318787 EYA3Q99504 573 aa20.37■□□□□ 0.85
HDDC2-201ENST00000318787 SRCIN1Q9C0H9 1055 aa20.37■□□□□ 0.85
HDDC2-201ENST00000318787 SMC4Q9NTJ3 1288 aa20.37■□□□□ 0.85
HDDC2-201ENST00000318787 ITGA6P23229 1130 aa20.36■□□□□ 0.85
HDDC2-201ENST00000318787 IGHMBP2P38935 993 aaKnown RBP20.36■□□□□ 0.85
HDDC2-201ENST00000318787 CXCL9Q07325 125 aa20.36■□□□□ 0.85
HDDC2-201ENST00000318787 CIAPIN1Q6FI81 312 aa20.36■□□□□ 0.85
HDDC2-201ENST00000318787 CHADLQ6NUI6 762 aa20.36■□□□□ 0.85
HDDC2-201ENST00000318787 TBC1D16Q8TBP0 767 aa20.36■□□□□ 0.85
HDDC2-201ENST00000318787 GGA1Q9UJY5 639 aa20.36■□□□□ 0.85
HDDC2-201ENST00000318787 CASP7P55210 303 aa20.35■□□□□ 0.85
HDDC2-201ENST00000318787 HNRNPUQ00839 825 aaKnown RBP eCLIP20.35■□□□□ 0.85
HDDC2-201ENST00000318787 ZC3H12CQ9C0D7 883 aaKnown RBP20.35■□□□□ 0.85
HDDC2-201ENST00000318787 GRM8O00222 908 aa20.34■□□□□ 0.85
HDDC2-201ENST00000318787 DNAJC5GQ8N7S2 189 aa20.34■□□□□ 0.85
HDDC2-201ENST00000318787 ECE2O60344 883 aa20.34■□□□□ 0.85
HDDC2-201ENST00000318787 EPS15P42566 896 aa20.34■□□□□ 0.85
HDDC2-201ENST00000318787 XDHP47989 1333 aa20.34■□□□□ 0.85
HDDC2-201ENST00000318787 SCNN1DP51172 638 aa20.34■□□□□ 0.85
HDDC2-201ENST00000318787 LDHDQ86WU2 507 aa20.34■□□□□ 0.85
HDDC2-201ENST00000318787 MPHOSPH8Q99549 860 aa20.34■□□□□ 0.85
HDDC2-201ENST00000318787 PLA2G12BQ9BX93 195 aa20.34■□□□□ 0.85
HDDC2-201ENST00000318787 RTL9Q8NET4 1388 aa20.33■□□□□ 0.84
HDDC2-201ENST00000318787 PTPRCP08575 1304 aa20.33■□□□□ 0.84
HDDC2-201ENST00000318787 YDJCA8MPS7 323 aa20.33■□□□□ 0.84
HDDC2-201ENST00000318787 ALDH1L1O75891 902 aa20.33■□□□□ 0.84
HDDC2-201ENST00000318787 GMPSP49915 693 aaPredicted RBP20.33■□□□□ 0.84
HDDC2-201ENST00000318787 TNIP1Q15025 636 aa20.33■□□□□ 0.84
HDDC2-201ENST00000318787 PNMA8AQ86V59 439 aaPredicted RBP20.33■□□□□ 0.84
HDDC2-201ENST00000318787 ANKRD18BA2A2Z9 1011 aa20.32■□□□□ 0.84
HDDC2-201ENST00000318787 TAF7LQ5H9L4 462 aa20.32■□□□□ 0.84
HDDC2-201ENST00000318787 BSDC1Q9NW68 430 aaPredicted RBP20.32■□□□□ 0.84
HDDC2-201ENST00000318787 PODXL2Q9NZ53 605 aa20.32■□□□□ 0.84
HDDC2-201ENST00000318787 ADAMTSL1Q8N6G6 1762 aa20.32■□□□□ 0.84
HDDC2-201ENST00000318787 SCN9AQ15858 1988 aa20.31■□□□□ 0.84
HDDC2-201ENST00000318787 A0A1B0GUL6 1792 aa20.31■□□□□ 0.84
HDDC2-201ENST00000318787 ALDH1L2Q3SY69 923 aa20.31■□□□□ 0.84
HDDC2-201ENST00000318787 LMBR1LQ6UX01 489 aa20.31■□□□□ 0.84
HDDC2-201ENST00000318787 TRMT2AQ8IZ69 625 aaKnown RBP20.31■□□□□ 0.84
HDDC2-201ENST00000318787 MINPP1Q9UNW1 487 aa20.31■□□□□ 0.84
HDDC2-201ENST00000318787 CSF1RP07333 972 aa20.3■□□□□ 0.84
HDDC2-201ENST00000318787 ATP2B4P23634 1241 aa20.3■□□□□ 0.84
HDDC2-201ENST00000318787 FOXO4P98177 505 aa20.3■□□□□ 0.84
HDDC2-201ENST00000318787 IFIT5Q13325 482 aaKnown RBP20.3■□□□□ 0.84
HDDC2-201ENST00000318787 MAP1SQ66K74 1059 aaPredicted RBP20.3■□□□□ 0.84
HDDC2-201ENST00000318787 ZBTB12Q9Y330 459 aaPredicted RBP20.3■□□□□ 0.84
HDDC2-201ENST00000318787 PSMD14O00487 310 aa20.29■□□□□ 0.84
HDDC2-201ENST00000318787 EPHA10Q5JZY3 1008 aa20.29■□□□□ 0.84
HDDC2-201ENST00000318787 KCNQ5Q9NR82 932 aa20.29■□□□□ 0.84
HDDC2-201ENST00000318787 GPRC5DQ9NZD1 345 aa20.29■□□□□ 0.84
HDDC2-201ENST00000318787 WTIPA6NIX2 430 aaPredicted RBP20.28■□□□□ 0.84
HDDC2-201ENST00000318787 NBPF7P0C2Y1 421 aaPredicted RBP20.28■□□□□ 0.84
HDDC2-201ENST00000318787 KCNJ4P48050 445 aa20.28■□□□□ 0.84
HDDC2-201ENST00000318787 CCT4P50991 539 aaKnown RBP20.28■□□□□ 0.84
HDDC2-201ENST00000318787 CCDC57Q2TAC2 916 aa20.28■□□□□ 0.84
HDDC2-201ENST00000318787 SUCLG2Q96I99 432 aa20.28■□□□□ 0.84
HDDC2-201ENST00000318787 PSME4Q14997 1843 aa20.28■□□□□ 0.84
HDDC2-201ENST00000318787 CACNB1Q02641 598 aaPredicted RBP20.27■□□□□ 0.84
HDDC2-201ENST00000318787 FBXW7Q969H0 707 aa20.27■□□□□ 0.84
HDDC2-201ENST00000318787 ZNF594Q96JF6 807 aaPredicted RBP20.27■□□□□ 0.84
HDDC2-201ENST00000318787 ADARB2Q9NS39 739 aaKnown RBP20.27■□□□□ 0.84
HDDC2-201ENST00000318787 SHTN1A0MZ66 631 aa20.26■□□□□ 0.83
HDDC2-201ENST00000318787 CT47B1P0C2W7 299 aaPredicted RBP20.26■□□□□ 0.83
HDDC2-201ENST00000318787 HELBQ8NG08 1087 aaPredicted RBP20.26■□□□□ 0.83
HDDC2-201ENST00000318787 CNOT7Q9UIV1 285 aaKnown RBP20.26■□□□□ 0.83
HDDC2-201ENST00000318787 NOB1Q9ULX3 412 aaKnown RBP20.26■□□□□ 0.83
HDDC2-201ENST00000318787 PLIN1O60240 522 aa20.25■□□□□ 0.83
HDDC2-201ENST00000318787 CHRNDQ07001 517 aa20.25■□□□□ 0.83
HDDC2-201ENST00000318787 USP50Q70EL3 339 aaPredicted RBP20.25■□□□□ 0.83
HDDC2-201ENST00000318787 MICALL2Q8IY33 904 aa20.25■□□□□ 0.83
HDDC2-201ENST00000318787 CNTROBQ8N137 903 aa20.25■□□□□ 0.83
HDDC2-201ENST00000318787 ANKRD2Q9GZV1 360 aa20.25■□□□□ 0.83
HDDC2-201ENST00000318787 CNNM1Q9NRU3 951 aa20.25■□□□□ 0.83
HDDC2-201ENST00000318787 H7C1D1 291 aa20.24■□□□□ 0.83
HDDC2-201ENST00000318787 TAF5LO75529 589 aa20.24■□□□□ 0.83
HDDC2-201ENST00000318787 KLRG1Q96E93 195 aa20.24■□□□□ 0.83
HDDC2-201ENST00000318787 MED23Q9ULK4 1368 aa20.24■□□□□ 0.83
HDDC2-201ENST00000318787 ZNF804BA4D1E1 1349 aa20.24■□□□□ 0.83
HDDC2-201ENST00000318787 RBM26Q5T8P6 1007 aaKnown RBP20.23■□□□□ 0.83
HDDC2-201ENST00000318787 LDHAL6AQ6ZMR3 332 aa20.23■□□□□ 0.83
HDDC2-201ENST00000318787 BICC1Q9H694 974 aaKnown RBP20.23■□□□□ 0.83
HDDC2-201ENST00000318787 RARSP54136 660 aaKnown RBP20.22■□□□□ 0.83
HDDC2-201ENST00000318787 LEMD3Q9Y2U8 911 aa20.22■□□□□ 0.83
HDDC2-201ENST00000318787 TRPM7Q96QT4 1865 aa20.22■□□□□ 0.83
HDDC2-201ENST00000318787 KLRK1P26718 216 aa20.21■□□□□ 0.83
HDDC2-201ENST00000318787 TBC1D10BQ4KMP7 808 aaPredicted RBP20.21■□□□□ 0.83
HDDC2-201ENST00000318787 SAMD7Q7Z3H4 446 aa20.21■□□□□ 0.83
HDDC2-201ENST00000318787 TRPM4Q8TD43 1214 aa20.21■□□□□ 0.83
HDDC2-201ENST00000318787 FRAT1Q92837 279 aaPredicted RBP20.21■□□□□ 0.83
HDDC2-201ENST00000318787 API5Q9BZZ5 524 aaKnown RBP20.21■□□□□ 0.83
HDDC2-201ENST00000318787 SNAP23O00161 211 aa20.21■□□□□ 0.83
HDDC2-201ENST00000318787 ITGBL1O95965 494 aaPredicted RBP20.21■□□□□ 0.83
HDDC2-201ENST00000318787 TXNRD3Q86VQ6 643 aa20.21■□□□□ 0.83
HDDC2-201ENST00000318787 KAZALD1Q96I82 304 aa20.21■□□□□ 0.83
HDDC2-201ENST00000318787 POLR2AP24928 1970 aaKnown RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms