RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 SLFN5Q08AF3 891 aa18.41■□□□□ 0.54
HMGN3-201ENST00000275036 LINS1Q8NG48 757 aa18.41■□□□□ 0.54
HMGN3-201ENST00000275036 GREM2Q9H772 168 aa18.41■□□□□ 0.54
HMGN3-201ENST00000275036 KCNQ5Q9NR82 932 aa18.41■□□□□ 0.54
HMGN3-201ENST00000275036 PODXL2Q9NZ53 605 aa18.41■□□□□ 0.54
HMGN3-201ENST00000275036 RTL9Q8NET4 1388 aa18.41■□□□□ 0.54
HMGN3-201ENST00000275036 WTIPA6NIX2 430 aaPredicted RBP18.4■□□□□ 0.54
HMGN3-201ENST00000275036 DOK7Q18PE1 504 aa18.4■□□□□ 0.54
HMGN3-201ENST00000275036 MKRN1Q9UHC7 482 aaKnown RBP18.4■□□□□ 0.54
HMGN3-201ENST00000275036 BEND3Q5T5X7 828 aa18.39■□□□□ 0.53
HMGN3-201ENST00000275036 USP50Q70EL3 339 aaPredicted RBP18.39■□□□□ 0.53
HMGN3-201ENST00000275036 ADARB2Q9NS39 739 aaKnown RBP18.39■□□□□ 0.53
HMGN3-201ENST00000275036 ZBTB12Q9Y330 459 aaPredicted RBP18.39■□□□□ 0.53
HMGN3-201ENST00000275036 PSMD14O00487 310 aa18.38■□□□□ 0.53
HMGN3-201ENST00000275036 ECE2O60344 883 aa18.38■□□□□ 0.53
HMGN3-201ENST00000275036 UFL1O94874 794 aa18.38■□□□□ 0.53
HMGN3-201ENST00000275036 HIRAP54198 1017 aaPredicted RBP18.38■□□□□ 0.53
HMGN3-201ENST00000275036 ANKRD18AQ8IVF6 992 aa18.38■□□□□ 0.53
HMGN3-201ENST00000275036 PLA2G12BQ9BX93 195 aa18.38■□□□□ 0.53
HMGN3-201ENST00000275036 CNTNAP1P78357 1384 aa18.38■□□□□ 0.53
HMGN3-201ENST00000275036 TMEM88BA6NKF7 163 aa18.37■□□□□ 0.53
HMGN3-201ENST00000275036 TNIP1Q15025 636 aa18.37■□□□□ 0.53
HMGN3-201ENST00000275036 TRMT2AQ8IZ69 625 aaKnown RBP18.37■□□□□ 0.53
HMGN3-201ENST00000275036 TRPM4Q8TD43 1214 aa18.37■□□□□ 0.53
HMGN3-201ENST00000275036 ANKIB1Q9P2G1 1089 aa18.37■□□□□ 0.53
HMGN3-201ENST00000275036 TRAF5O00463 557 aa18.36■□□□□ 0.53
HMGN3-201ENST00000275036 ZNF646O15015 1829 aaPredicted RBP18.36■□□□□ 0.53
HMGN3-201ENST00000275036 PSME4Q14997 1843 aa18.36■□□□□ 0.53
HMGN3-201ENST00000275036 DIEXFQ68CQ4 756 aaKnown RBP18.36■□□□□ 0.53
HMGN3-201ENST00000275036 MIER1Q8N108 512 aa18.36■□□□□ 0.53
HMGN3-201ENST00000275036 MRPL50Q8N5N7 158 aaKnown RBP18.36■□□□□ 0.53
HMGN3-201ENST00000275036 EYA3Q99504 573 aa18.36■□□□□ 0.53
HMGN3-201ENST00000275036 BCL2L13Q9BXK5 485 aa18.36■□□□□ 0.53
HMGN3-201ENST00000275036 GGA1Q9UJY5 639 aa18.36■□□□□ 0.53
HMGN3-201ENST00000275036 XDHP47989 1333 aa18.35■□□□□ 0.53
HMGN3-201ENST00000275036 EGFRP00533 1210 aa18.35■□□□□ 0.53
HMGN3-201ENST00000275036 FAM161AQ3B820 660 aa18.35■□□□□ 0.53
HMGN3-201ENST00000275036 MICALL2Q8IY33 904 aa18.35■□□□□ 0.53
HMGN3-201ENST00000275036 SSH1Q8WYL5 1049 aa18.35■□□□□ 0.53
HMGN3-201ENST00000275036 CDC5LQ99459 802 aaKnown RBP18.35■□□□□ 0.53
HMGN3-201ENST00000275036 CNOT7Q9UIV1 285 aaKnown RBP18.35■□□□□ 0.53
HMGN3-201ENST00000275036 MINPP1Q9UNW1 487 aa18.35■□□□□ 0.53
HMGN3-201ENST00000275036 CSF1RP07333 972 aa18.34■□□□□ 0.53
HMGN3-201ENST00000275036 ZC3H12CQ9C0D7 883 aaKnown RBP18.34■□□□□ 0.53
HMGN3-201ENST00000275036 BSDC1Q9NW68 430 aaPredicted RBP18.34■□□□□ 0.53
HMGN3-201ENST00000275036 PGAP2Q9UHJ9 254 aa18.34■□□□□ 0.53
HMGN3-201ENST00000275036 TRPM7Q96QT4 1865 aa18.34■□□□□ 0.53
HMGN3-201ENST00000275036 A0A1B0GUL6 1792 aa18.34■□□□□ 0.53
HMGN3-201ENST00000275036 HSPA1AP0DMV8 641 aaKnown RBP18.33■□□□□ 0.52
HMGN3-201ENST00000275036 HSPA1BP0DMV9 641 aaKnown RBP18.33■□□□□ 0.52
HMGN3-201ENST00000275036 ITGA6P23229 1130 aa18.33■□□□□ 0.52
HMGN3-201ENST00000275036 FOXO4P98177 505 aa18.33■□□□□ 0.52
HMGN3-201ENST00000275036 CST9Q5W186 159 aa18.33■□□□□ 0.52
HMGN3-201ENST00000275036 VEGFBP49765 207 aa18.32■□□□□ 0.52
HMGN3-201ENST00000275036 SLC4A10Q6U841 1118 aa18.32■□□□□ 0.52
HMGN3-201ENST00000275036 SAMD7Q7Z3H4 446 aa18.32■□□□□ 0.52
HMGN3-201ENST00000275036 DPF2Q92785 391 aa18.32■□□□□ 0.52
HMGN3-201ENST00000275036 GLIS2Q9BZE0 524 aaPredicted RBP18.32■□□□□ 0.52
HMGN3-201ENST00000275036 RASSF10A6NK89 507 aa18.31■□□□□ 0.52
HMGN3-201ENST00000275036 GRM8O00222 908 aa18.31■□□□□ 0.52
HMGN3-201ENST00000275036 VIL1P09327 827 aaKnown RBP18.31■□□□□ 0.52
HMGN3-201ENST00000275036 ATP2B4P23634 1241 aa18.31■□□□□ 0.52
HMGN3-201ENST00000275036 EPHA10Q5JZY3 1008 aa18.31■□□□□ 0.52
HMGN3-201ENST00000275036 DLK2Q6UY11 383 aa18.31■□□□□ 0.52
HMGN3-201ENST00000275036 MED23Q9ULK4 1368 aa18.3■□□□□ 0.52
HMGN3-201ENST00000275036 ALDH1L1O75891 902 aa18.3■□□□□ 0.52
HMGN3-201ENST00000275036 KLRK1P26718 216 aa18.3■□□□□ 0.52
HMGN3-201ENST00000275036 TBC1D10BQ4KMP7 808 aaPredicted RBP18.3■□□□□ 0.52
HMGN3-201ENST00000275036 TXNRD3Q86VQ6 643 aa18.3■□□□□ 0.52
HMGN3-201ENST00000275036 SRCIN1Q9C0H9 1055 aa18.3■□□□□ 0.52
HMGN3-201ENST00000275036 ZNF609O15014 1411 aa18.3■□□□□ 0.52
HMGN3-201ENST00000275036 POLR2AP24928 1970 aaKnown RBP18.3■□□□□ 0.52
HMGN3-201ENST00000275036 RPS12P25398 132 aaKnown RBP18.29■□□□□ 0.52
HMGN3-201ENST00000275036 CCT4P50991 539 aaKnown RBP18.29■□□□□ 0.52
HMGN3-201ENST00000275036 COL13A1Q5TAT6 717 aaPredicted RBP18.29■□□□□ 0.52
HMGN3-201ENST00000275036 THSD7BQ9C0I4 1608 aa18.29■□□□□ 0.52
HMGN3-201ENST00000275036 PTPRCP08575 1304 aa18.28■□□□□ 0.52
HMGN3-201ENST00000275036 H7C1D1 291 aa18.28■□□□□ 0.52
HMGN3-201ENST00000275036 IGHMBP2P38935 993 aaKnown RBP18.28■□□□□ 0.52
HMGN3-201ENST00000275036 ALDH1L2Q3SY69 923 aa18.28■□□□□ 0.52
HMGN3-201ENST00000275036 IFFO2Q5TF58 517 aa18.28■□□□□ 0.52
HMGN3-201ENST00000275036 ZC3H15Q8WU90 426 aaKnown RBP18.28■□□□□ 0.52
HMGN3-201ENST00000275036 C9orf78Q9NZ63 289 aaPredicted RBP18.28■□□□□ 0.52
HMGN3-201ENST00000275036 ABT1Q9ULW3 272 aaKnown RBP18.28■□□□□ 0.52
HMGN3-201ENST00000275036 NBPF7P0C2Y1 421 aaPredicted RBP18.27■□□□□ 0.52
HMGN3-201ENST00000275036 DEFB115Q30KQ5 88 aa18.27■□□□□ 0.52
HMGN3-201ENST00000275036 LMBR1LQ6UX01 489 aa18.27■□□□□ 0.52
HMGN3-201ENST00000275036 KAZALD1Q96I82 304 aa18.27■□□□□ 0.52
HMGN3-201ENST00000275036 GMLQ99445 158 aa18.27■□□□□ 0.52
HMGN3-201ENST00000275036 ASTN2O75129 1339 aaPredicted RBP18.26■□□□□ 0.51
HMGN3-201ENST00000275036 IRS2Q9Y4H2 1338 aa18.26■□□□□ 0.51
HMGN3-201ENST00000275036 ANKRD18BA2A2Z9 1011 aa18.26■□□□□ 0.51
HMGN3-201ENST00000275036 G3V3G9 751 aa18.26■□□□□ 0.51
HMGN3-201ENST00000275036 SNAP23O00161 211 aa18.26■□□□□ 0.51
HMGN3-201ENST00000275036 CHRNDQ07001 517 aa18.26■□□□□ 0.51
HMGN3-201ENST00000275036 RBM26Q5T8P6 1007 aaKnown RBP18.26■□□□□ 0.51
HMGN3-201ENST00000275036 DCAF8Q5TAQ9 597 aa18.26■□□□□ 0.51
HMGN3-201ENST00000275036 RSBN1LQ6PCB5 846 aaPredicted RBP18.26■□□□□ 0.51
HMGN3-201ENST00000275036 SUCLG2Q96I99 432 aa18.26■□□□□ 0.51
HMGN3-201ENST00000275036 MXD3Q9BW11 206 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms