RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 DMRTC1Q5HYR2 192 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 FAM78AQ5JUQ0 283 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PDZK1Q5T2W1 519 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 OR4F3Q6IEY1 312 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ADNP2Q6IQ32 1131 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SLC25A24Q6NUK1 477 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 CNIH2Q6PI25 160 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SMARCD3Q6STE5 483 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ARL9Q6T311 187 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SPINT4Q6UDR6 99 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 TEX43Q6ZNM6 134 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 LINC00336Q6ZUF6 198 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 H2AFVQ71UI9 128 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 UTS2BQ765I0 119 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ADM2Q7Z4H4 148 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PLA2G4DQ86XP0 818 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ECHDC2Q86YB7 292 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PSTKQ8IV42 348 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 NUDCD3Q8IVD9 361 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 WDFY1Q8IWB7 410 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZNF101Q8IZC7 436 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 LRRC75A-AS1Q8N1F1 130 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZNF664Q8N3J9 261 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 MREGQ8N565 214 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 MS4A15Q8N5U1 240 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 TMEM105Q8N8V8 129 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZFP41Q8N8Y5 198 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 FNDC5Q8NAU1 212 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 HSD17B11Q8NBQ5 300 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 C1orf64Q8NEQ6 169 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 TRPV1Q8NER1 839 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SDR9C7Q8NEX9 313 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 OR10AD1Q8NGE0 317 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 OR5M1Q8NGP8 315 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 OR10R2Q8NGX6 335 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 OR10J6PQ8NGY7 276 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 OR1P1Q8NH06 330 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 TRMT10AQ8TBZ6 339 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 LKAAEAR1Q8TD35 194 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PYROXD1Q8WU10 500 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SDR42E1Q8WUS8 393 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 GEMIN6Q8WXD5 167 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 HGDQ93099 445 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 TBRG4Q969Z0 631 aaKnown RBP eCLIP0.11□□□□□ -2.39
VPS35-212ENST00000640313 FAM3DQ96BQ1 224 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 EFHD2Q96C19 240 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 FLYWCH2Q96CP2 140 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 TVP23CQ96ET8 276 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 GALNT14Q96FL9 552 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 MED8Q96G25 268 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 DUS3LQ96G46 650 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZBED3Q96IU2 234 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 C12orf42Q96LP6 360 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZNF488Q96MN9 340 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PANX2Q96RD6 677 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 CLCC1Q96S66 551 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 NPY6RQ99463 290 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 P2RX4Q99571 388 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 KLF6Q99612 283 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 PKMYT1Q99640 499 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 RARRES2Q99969 163 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 KCTD14Q9BQ13 255 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 ECSITQ9BQ95 431 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SULT4A1Q9BR01 284 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 TM2D3Q9BRN9 247 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 TRIM62Q9BVG3 475 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SLC25A2Q9BXI2 301 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 SAMD10Q9BYL1 202 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 KRT23Q9C075 422 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PARP12Q9H0J9 701 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 GBA3Q9H227 469 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PPA2Q9H2U2 334 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ANKRD19PQ9H560 264 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 CWH43Q9H720 699 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 RPF2Q9H7B2 306 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 NHEJ1Q9H9Q4 299 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 NMRAL1Q9HBL8 299 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PALMDQ9NP74 551 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 POLE3Q9NRF9 147 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 C8orf17Q9NRJ1 99 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 GPATCH2LQ9NWQ4 482 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 KLHL28Q9NXS3 571 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 RNF14Q9UBS8 474 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 ZNF230Q9UIE0 474 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 ADAM28Q9UKQ2 775 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 TMCO1Q9UM00 188 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 RPH3ALQ9UNE2 315 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 MMACHCQ9Y4U1 282 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 PEX16Q9Y5Y5 336 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 AHDC1Q5TGY3 1603 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 PRRC2BQ5JSZ5 2229 aaKnown RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 ABCC9O60706 1549 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 FLG2Q5D862 2391 aaPredicted RBP0.11□□□□□ -2.39
VPS35-212ENST00000640313 ICE1Q9Y2F5 2266 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 FAT4Q6V0I7 4981 aa0.11□□□□□ -2.39
VPS35-212ENST00000640313 NOTCH1P46531 2555 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CNTNAP1P78357 1384 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 PNPLA6Q8IY17 1366 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 RPAP1Q9BWH6 1393 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 TRAV26-1A0A087WT03 109 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms